BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29500.1
Length=715
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481866 jgi|Araly1|481866|fgenesh2_kg.4__926__AT2G29500.1 682 0.0
> Ahg481866 jgi|Araly1|481866|fgenesh2_kg.4__926__AT2G29500.1
Length=589
Score = 682 bits (369), Expect = 0.0
Identities = 464/510 (91%), Gaps = 6/510 (1%)
Strand=Plus/Plus
Query 63 AAAATGTCGATGATTCCAAGTTTCTTCAACAACAACAGAC---G-AAGCAACATCTTTGA 118
|||||||||||||||||||| ||||||||||||||||| | | || ||||||||| ||
Sbjct 1 AAAATGTCGATGATTCCAAGCTTCTTCAACAACAACAGGCGTGGCAA-CAACATCTTCGA 59
Query 119 TCCATTCTCTCTTGACGTATGGGATCCATTCAAGGAACTAACATCATCATCACTTTCTCG 178
|| ||||| || ||||| |||||||||||||| ||||| |||||||| || ||||| ||
Sbjct 60 CCCGTTCTCACTCGACGTTTGGGATCCATTCAAAGAACTTACATCATCTTCGCTTTCACG 119
Query 179 TGAGAACTCAGCGATCGTGAACGCACGTGTGGACTGGAGAGAGACGCCTGAGGCCCACGT 238
||| ||||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 120 TGAAAACTCTGCGATCGTTAACGCACGTGTGGACTGGAGAGAGACGCCGGAGGCGCACGT 179
Query 239 GTTTAAAGCTGACTTGCCTGGATTGAAGAAGGAGGAAGTTAAAGTTGAGATTGAGGAGGA 298
||| ||||| || ||||| ||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 180 GTTCAAAGCGGATTTGCCGGGATTGAAGAAAGAAGAAGTGAAAGTTGAGATTGAGGAAGA 239
Query 299 TAGTGTTTTGAAGATCAGTGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGACACGTG 358
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAGTGTTTTGAAGATCAGCGGAGAGAGACACGTGGAGAAAGAAGATAAGAATGACACGTG 299
Query 359 GCACCGTGTGGAGAGATCGAGTGGACAGTTTACGAGGAGGTTTAGGTTGCCGGAGAATGT 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 300 GCACCGTGTGGAGAGATCGAGTGGACAGTTTACGAGGAGGTTTAGGCTGCCGGAGAATGT 359
Query 419 GAAGATGGATCAGGTTAAGGCTGCGATGGAGAATGGTGTGTTGACTGTTACGGTGCCTAA 478
|||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 360 GAAGATGGATCAAGTTAAGGCTGCTATGGAGAATGGTGTGTTGACTGTGACGGTGCCTAA 419
Query 479 GGCTGAGACTAAGAAGGCTGATGTTAAGTCTATTCAGATCTCTGGTTGAGTAATG-GGTT 537
||||||||| |||||||||||||| ||||||||||||||| ||||||||||| | ||||
Sbjct 420 GGCTGAGACCAAGAAGGCTGATGTGAAGTCTATTCAGATCACTGGTTGAGTATTTTGGTT 479
Query 538 CGAGTTTTATCATCGGAGTTGCTTGTGTTT 567
|||||||| || ||||||| |||||||||
Sbjct 480 CGAGTTTTGTCGCCGGAGTTTCTTGTGTTT 509
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26304812730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5