BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29525.1
Length=1208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481869 jgi|Araly1|481869|fgenesh2_kg.4__929__AT2G29525.1 1465 0.0
> Ahg481869 jgi|Araly1|481869|fgenesh2_kg.4__929__AT2G29525.1
Length=1103
Score = 1465 bits (793), Expect = 0.0
Identities = 977/1060 (92%), Gaps = 36/1060 (3%)
Strand=Plus/Plus
Query 1 TCCTTCAAAATTATTGATTTGGGAATATATTCT-TGTCAATTCAGGTGAATCAAACTGGT 59
||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1 TCCTTAAAAATTATTGATTTGGGAATATATTTTGTGTCAATTCAGGTGAATCAAACTGGT 60
Query 60 CGGTGCAATTCAAGATTGCCCTCGTATTTGTGTCGGGGAAT-GAAACTGTTCTGTCTTTC 118
||| | | |||| | || | | |||| | | || || ||| ||||
Sbjct 61 TGGT-C----C--GATT---C-CGGA--T-TGTC-----CTCG-AA---TT-TGT-TTTC 95
Query 119 TTACAAAAGCAGTTGCA-TTTGATC-TTGCTGCAGAGATTAATGTTCATTCTCAATCTTA 176
||||||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||
Sbjct 96 TTACAAAAGCAGTTGCATTTTGATCTTTGCTACATAGATTAATGTTCATTCTCAATCTTA 155
Query 177 ACCATGCCGGTTTACGTTGATCGCGAAGCTCCTAAGCTATGGAGACGAATTTACTCAGAA 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 156 ACCATGCCGGTTTACGTTGATCGCGAAGCTCCTAAGCTATGGAGACGAATTTACTCAGAA 215
Query 237 GCGACATTAGAAGCTTCTCTTCTTGCTGAAAAATGGAAGCTTGTTCTTGCTGGACTTGTA 296
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GCAACATTAGAAGCTTCTCTTCTTGCTGAAAAATGGAAGCTTGTTCTTGCTGGACTTGTA 275
Query 297 TTTCAGTACATTCATGGACTTGCTGCTCATGGAGTTCACTACTTACACCGACCTGGTCCT 356
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 TTTCAGTACATTCATGGACTTGCTGCTCATGGAGTTCACTACTTACACCGACCTGGTCCA 335
Query 357 ACTCTTCAAGATGCTGGTTTCTTTATTCTTCCAGCACTTGGGCAAGATAAAGCATTTTTC 416
|| ||||||||||| |||||||||||||||||||| ||||||||||| || || ||| ||
Sbjct 336 ACGCTTCAAGATGCCGGTTTCTTTATTCTTCCAGCGCTTGGGCAAGACAAGGCCTTTGTC 395
Query 417 AGTGAAACTGTGTTTGTCACTATCTTTGGATCATTTATCTTGTGGACATTTCATCCTTTT 476
|||||||||||||||||||||||||||||||| ||| | | ||||| |||||||| |||
Sbjct 396 AGTGAAACTGTGTTTGTCACTATCTTTGGATCTTTTGTAATATGGACCTTTCATCCCTTT 455
Query 477 GTTTCCCACAGTAA-AAAGATTTGTACAGTTTTGATATGGTGCAGAGTTTTTGTTTATTT 535
|||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 456 GTTTCCCACACTAAGAAA-ATTTGTACAGTTTTGATATGGTGCAGAGTTTTTGTTTATTT 514
Query 536 AGCTGCTTCTCAAAGTCTGAGGATCATAACATTCTTTGCAACACAGCTTCCTGGGCCGAA 595
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 515 AGCTGCTTCTCAAAGTCTGAGGATCATCACATTCTTTGCAACACAGCTTCCTGGGCCGAA 574
Query 596 TTATCATTGTCGAGAAGGCTCCAAGCTCGCCAAGATTCCACCTCCAAAGAATGTTCTTGA 655
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 575 TTATCATTGTCGAGAAGGCTCAAAGCTCGCCAAGATTCCGCCTCCAAAGAATGTTCTTGA 634
Query 656 AGTACTCTTGATTAACTTTCCTGATGGAGTTATATATGGTTGTGGAGATCTGATATTTTC 715
|||||||||||| ||||||||||||||||| |||||||||||||||||| | ||||||||
Sbjct 635 AGTACTCTTGATCAACTTTCCTGATGGAGTGATATATGGTTGTGGAGATTTAATATTTTC 694
Query 716 ATCACATACGATATTCACCTTAGTCTTTGTACGCACATATCAAAGATACGGCACACGAAG 775
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 ATCACATACAATATTCACCTTAGTCTTTGTACGCACATATCAAAGATACGGCACACGAAG 754
Query 776 GTGGATCAAGCA-CTTGGCTTGGCTTATGGCAGTAATACAGAGCATATTGATTATAGCAT 834
|||||||||||| || |||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 755 GTGGATCAAGCATCT-GGCTTGGCTTATGGCAGTTATACAGAGCCTGTTGATTATAGCAT 813
Query 835 CAAGGAAACATTACACAGTTGACATTGTTGTTGCATGGTATACTGTGAACCTTGTAATGT 894
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 814 CAAGGAAACATTACACAGTAGACATTGTTGTTGCATGGTATACTGTGAACCTTGTGATGT 873
Query 895 TCTACGTTGACAGTAAACTGCCAGAAATGGCAGAACGTTCTAGTGGACCTTCTCCTACGC 954
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 874 TCTACGTTGACAGTAAACTGCCAGAAATGGCAGAGCGTTCTAGTGGACCTTCTCAGACGC 933
Query 955 CTTTACTTCCACTGAGCACAAAGGACAGTAAGAACAAGAGCAAAGAAGATCATCAGAGAC 1014
|||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||
Sbjct 934 CTTTACTTCCACTGAGCACAAAGGACGGTAA---CAAGAGCAAAGAAGACCATCAAAGAC 990
Query 1015 TTCTAAACGAGAACAATGTAGCAGATGATCATTGATCTTA 1054
|||||||| ||| ||||||||||||||| | |||||||||
Sbjct 991 TTCTAAACAAGACCAATGTAGCAGATGAGCTTTGATCTTA 1030
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45099410811
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5