BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G29530.3

Length=639
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933429 jgi|Araly1|933429|scaffold_401417.1                        520    7e-147


> Ahg933429 jgi|Araly1|933429|scaffold_401417.1
Length=485

 Score =  520 bits (281),  Expect = 7e-147
 Identities = 350/380 (92%), Gaps = 18/380 (5%)
 Strand=Plus/Plus

Query  254  GCTTGCTCAAACATGCTTTAATAAATGTGTGGATAAAAGGTACAAGGAAGCTGAGCTAAA  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  119  GCTTGCTCAAACATGCTTTAATAAATGTGTGGATAAAAGGTACAAGGAAGCTGAGTTAAA  178

Query  314  CATGGGTGAGAATAGTTGCATCGACCGTTGTGTTTCCAAGTACTGGCAGGTAAATGGAAT  373
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  179  CATGGGCGAGAATAGTTGCATCGACCGTTGTGTTTCCAAGTACTGGCAGGTAAATGGAAT  238

Query  374  GGTTGGACAGCTTCTAAGTGCTGGCAAGCCTCCCGTGTAATCCAGTTTAAAGGCAATTAT  433
            ||||||||| ||||||||||||||||||    ||      ||||||||||||||||||||
Sbjct  239  GGTTGGACAACTTCTAAGTGCTGGCAAG----CC------TCCAGTTTAAAGGCAATTAT  288

Query  434  TACAGACCAAAAAGCTCATGGAGGGAACACAACTCTGTTCTTTG--TTTTTCTAAAGTTT  491
            || ||||| |||||||||||||||||||| ||||||||||||||  ||||||||||| ||
Sbjct  289  TATAGACC-AAAAGCTCATGGAGGGAACAAAACTCTGTTCTTTGTTTTTTTCTAAAGCTT  347

Query  492  AAGGCAATCTTGTTTTTATTGTCAAGAAAGTTGCATCACATTTTTGGCGCTGATTTGGAC  551
            ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct  348  AAGGCAATCTTGTTTTTATTGTCAAGAAAATTGCATCACATTTTTGGCTCTGATTTGGAC  407

Query  552  AAA-TTATGCAATTCCATGTGAACCCATTATTATTACCTAAGGGGTGAAATGAAATAACA  610
            ||| |||||||||||| |||||||||||||||| ||   |||||||||||||||||||||
Sbjct  408  AAAATTATGCAATTCCCTGTGAACCCATTATTACTA---AAGGGGTGAAATGAAATAACA  464

Query  611  AA-TCGAAAATAACGAAACA  629
            || |||||||| || |||||
Sbjct  465  AAATCGAAAATCACAAAACA  484


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 109/118 (92%), Gaps = 6/118 (5%)
 Strand=Plus/Plus

Query  70   ATTCAGGTACTGCTaaaaaaaTGGC-T-T-C---TCCTATTCCCGTCGGCGTTACTAAGG  123
            |||||||||||||||||| |||||| | | |   ||||||||||| ||||||||||||||
Sbjct  1    ATTCAGGTACTGCTAAAAGAATGGCTTCTCCTAGTCCTATTCCCGCCGGCGTTACTAAGG  60

Query  124  AACAGGCGTTTAGTATGGCACAAACGGAGATGGAGTATCGCGTGGAACTCTTTAACAA  181
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  61   AACAGGCGTTTAGTATGGCACAAACGGAGATGGAGTATCGGGTGGAACTCTTTAACAA  118



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23407471038


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5