BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29540.3
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900722 jgi|Araly1|900722|Al_scaffold_0004_1372 396 1e-109
> Ahg900722 jgi|Araly1|900722|Al_scaffold_0004_1372
Length=369
Score = 396 bits (214), Expect = 1e-109
Identities = 252/270 (93%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 199 TCCCAGAGTAACCGTGGCTGCATACACCATCCCACATCCTTCCCTTGAACAGGTCAATAT 258
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 TCCGAGAGTAACCGTGGCTGCATACACCATCCCACATCCTTCCCTTGAACAGGTCAATAT 161
Query 259 CCGGGTCCAGACAACAGGTGATCCAGCAAGAGAGGTTTTTAAAGATGCATGTCAAGAGCT 318
|||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||
Sbjct 162 CCGGGTCCAGACAACAGGTGATCCGGCAAGGGAAGTTTTCAAAGATGCATGTCAAGAACT 221
Query 319 CATGCAAATGAACAGACATGTGAGAAGCGTTTTTGATAAGGCTGTTGCTGAGTATAAGGA 378
|||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 222 TATGCAAATAAATAGACATGTGAGAAGTGTTTTTGATAAGGCTGTTACTGAGTATAAGGC 281
Query 379 TGA-ACAAAAGCGTAA-GGAGGAGGCTGAAGAAGAAGAGCTTAAGAGGCAGAGGGATCTA 436
|| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TGCTA-AAAAGC-TAAAGGAGGAGGCTGAAGAAGAAGAGCTTAAGAGGCAGAGGGATCTA 339
Query 437 TTTGGGTCCATGGACATTGAAAACAACTGA 466
|||||||||||||||||||||| |||||||
Sbjct 340 TTTGGGTCCATGGACATTGAAAGCAACTGA 369
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5