BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29540.3 Length=582 Score E Sequences producing significant alignments: (Bits) Value Ahg900722 jgi|Araly1|900722|Al_scaffold_0004_1372 396 1e-109 > Ahg900722 jgi|Araly1|900722|Al_scaffold_0004_1372 Length=369 Score = 396 bits (214), Expect = 1e-109 Identities = 252/270 (93%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 199 TCCCAGAGTAACCGTGGCTGCATACACCATCCCACATCCTTCCCTTGAACAGGTCAATAT 258 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 102 TCCGAGAGTAACCGTGGCTGCATACACCATCCCACATCCTTCCCTTGAACAGGTCAATAT 161 Query 259 CCGGGTCCAGACAACAGGTGATCCAGCAAGAGAGGTTTTTAAAGATGCATGTCAAGAGCT 318 |||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| || Sbjct 162 CCGGGTCCAGACAACAGGTGATCCGGCAAGGGAAGTTTTCAAAGATGCATGTCAAGAACT 221 Query 319 CATGCAAATGAACAGACATGTGAGAAGCGTTTTTGATAAGGCTGTTGCTGAGTATAAGGA 378 |||||||| || |||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 222 TATGCAAATAAATAGACATGTGAGAAGTGTTTTTGATAAGGCTGTTACTGAGTATAAGGC 281 Query 379 TGA-ACAAAAGCGTAA-GGAGGAGGCTGAAGAAGAAGAGCTTAAGAGGCAGAGGGATCTA 436 || | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 282 TGCTA-AAAAGC-TAAAGGAGGAGGCTGAAGAAGAAGAGCTTAAGAGGCAGAGGGATCTA 339 Query 437 TTTGGGTCCATGGACATTGAAAACAACTGA 466 |||||||||||||||||||||| ||||||| Sbjct 340 TTTGGGTCCATGGACATTGAAAGCAACTGA 369 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21290818662 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5