BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29570.1 Length=1133 Score E Sequences producing significant alignments: (Bits) Value Ahg481872 jgi|Araly1|481872|fgenesh2_kg.4__932__AT2G29570.1 1676 0.0 Ahg934259 jgi|Araly1|934259|scaffold_402247.1 206 4e-52 Ahg926461 jgi|Araly1|926461|scaffold_202022.1 200 2e-50 > Ahg481872 jgi|Araly1|481872|fgenesh2_kg.4__932__AT2G29570.1 Length=1121 Score = 1676 bits (907), Expect = 0.0 Identities = 1054/1125 (94%), Gaps = 10/1125 (1%) Strand=Plus/Plus Query 15 ACAATTGCAATCTCCTCCCAGAAATTTCAACAGCTCT-AAAAACCCTAACCGTTTCGATT 73 ||||||||||||||||| |||||||||||| | | || |||||||||||||| ||| ||| Sbjct 1 ACAATTGCAATCTCCTCTCAGAAATTTCAAGAACCCTAAAAAACCCTAACCG-TTCAATT 59 Query 74 CACACTCTAACCTTTCGATAATTTCCCAGAAGATGTTGGAGCTTCGTTTAGTTCAAGGTT 133 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 CACACTCTAAGCTTTCGATAATTTCCCAGAAGATGTTGGAGCTTCGTTTAGTTCAAGGTT 119 Query 134 CTCTACTGAAGAAGGTTCTAGAAGCGGTCAAAGATCTGGTGAACGATGCGAACTTCGACT 193 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 120 CTCTACTAAAGAAGGTTCTAGAAGCGGTCAAAGATCTTGTGAACGATGCGAACTTCGACT 179 Query 194 GTTCGACCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGCCATGTCGCGTTGGTGTCTC 253 |||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 180 GTTCAAGCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGTCACGTCGCGTTGGTGTCTC 239 Query 254 TTTTGCTTAGATCTGAAGGTTTCGAGCACTATAGATGCGATAGGAACCTCTCTATGGGAA 313 |||||||||||||||||||||| ||||| ||||| ||||||||||| || || ||||| | Sbjct 240 TTTTGCTTAGATCTGAAGGTTTTGAGCATTATAGGTGCGATAGGAATCTTTCCATGGGGA 299 Query 314 TGAATCTTGGTAATATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACCA 373 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 300 TGAATCTTGGTAACATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACTA 359 Query 374 TCAAAGCTGATGATGGTAGCGACACTGTTACTTTCATGTTTGAGAGTCCCACACAAGACA 433 |||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||| Sbjct 360 TCAAGGCTGATGATGGTAGCGACACTGTGACGTTCATGTTTGAGAGTCCCACGCAAGACA 419 Query 434 AGATTGCAGATTTTGAGATGAAGCTGATGGATATCGACAGTGAGCATTTAGGAATTCCTG 493 ||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 420 AGATTGCTGACTTTGAGATGAAGCTGATGGATATTGACAGTGAGCATTTAGGAATACCTG 479 Query 494 ATGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAG 553 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATGCTGAGTACCACTCAATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAG 539 Query 554 ATCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTT 613 |||||||||| |||||||| |||||||||||||| || || ||||||||||| ||||||| Sbjct 540 ATCTCAGTAGTATTGGTGATACAGTTGTGATCTCTGTGACCAAAGAAGGGGTCAAGTTTT 599 Query 614 CAACAGCAGGTGATATCGGGACAGCAAACATTGTGCTCAGGCAGAATACTACCGTCGACA 673 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 600 CAACAGCAGGTGATATCGGGACAGCAAACATTGTACTCAGGCAGAATACTACTGTCGACA 659 Query 674 AACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGA 733 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGA 719 Query 734 GGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACCATCAGTTTGT 793 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 720 GGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACGATCAGTTTGT 779 Query 794 CCTCTGAGTTACCGGTCGTGGTGGAGTACAAGGTGGCTGAGATGGGTTACATTCGATACT 853 |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 780 CCTCTGAGTTACCGGTTGTGGTGGAGTACAAGGTTGCTGAGATGGGTTACATTCGATACT 839 Query 854 ATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACCAAACCAGAATAATGATGAATGTTTG 913 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||| Sbjct 840 ATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACTAAGCCCTAATAATGATGAATGTTTT 899 Query 914 ATAGTCTTCGTTCGAGTCCTTT-GTTGAAATGTCTGTCTTGATTCAGTTGTTTTCTGGAT 972 |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 900 TTAGTTTTCGTTTAAGTCCTTTTGTTGAAATGTCTGTCTTGATTCAGTTGTTTTCTGGAT 959 Query 973 TTACTATCTTAAGGCAATGCTAAACTAGATAATCGTATG--ATGTTTGTCTT-TCTGAAA 1029 ||||||| ||||||||| | |||||||||||||| ||| | ||||||||| | || || Sbjct 960 TTACTATGTTAAGGCAACGGTAAACTAGATAATCAAATGTCA-GTTTGTCTTAT-TGCAA 1017 Query 1030 TTTGGAAAAGCTTGTTTATAACACTTTTCATCTGTTTGTTA-AACATTGAAGAAAAAGAA 1088 |||| ||||||||||| ||||| || ||||||||||||||| || ||||||||||||||| Sbjct 1018 TTTGAAAAAGCTTGTT-ATAACTCTATTCATCTGTTTGTTAGAAGATTGAAGAAAAAGAA 1076 Query 1089 GACACGAAGCCCTAAAACACGTTTGTTTGTGGCTTCTGCAACCTC 1133 ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1077 GACACAAAGCCCTAAAACACGTTTGTTTGTGGCTTCTGCAACCTC 1121 > Ahg934259 jgi|Araly1|934259|scaffold_402247.1 Length=349 Score = 206 bits (111), Expect = 4e-52 Identities = 123/129 (95%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 495 TGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGA 554 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 116 TGCTGAGTACCACTCAATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGAAATGCAAAGA 175 Query 555 TCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTTC 614 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 176 TCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGGGGTGAAGTTTTC 235 Query 615 AACAGCAGG 623 ||||| ||| Sbjct 236 AACAGTAGG 244 > Ahg926461 jgi|Araly1|926461|scaffold_202022.1 Length=308 Score = 200 bits (108), Expect = 2e-50 Identities = 122/129 (95%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 495 TGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGA 554 ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 116 TGCTGAGTACCACTCAATTGTGAGAATGCCTTTTGGTGAATTTTCCAGGAAATGCAAAGA 175 Query 555 TCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTTC 614 ||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 176 TCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGGGGTGAAGTTTTC 235 Query 615 AACAGCAGG 623 ||||| ||| Sbjct 236 AACAGTAGG 244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42240192036 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5