BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29570.1
Length=1133
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481872 jgi|Araly1|481872|fgenesh2_kg.4__932__AT2G29570.1 1676 0.0
Ahg934259 jgi|Araly1|934259|scaffold_402247.1 206 4e-52
Ahg926461 jgi|Araly1|926461|scaffold_202022.1 200 2e-50
> Ahg481872 jgi|Araly1|481872|fgenesh2_kg.4__932__AT2G29570.1
Length=1121
Score = 1676 bits (907), Expect = 0.0
Identities = 1054/1125 (94%), Gaps = 10/1125 (1%)
Strand=Plus/Plus
Query 15 ACAATTGCAATCTCCTCCCAGAAATTTCAACAGCTCT-AAAAACCCTAACCGTTTCGATT 73
||||||||||||||||| |||||||||||| | | || |||||||||||||| ||| |||
Sbjct 1 ACAATTGCAATCTCCTCTCAGAAATTTCAAGAACCCTAAAAAACCCTAACCG-TTCAATT 59
Query 74 CACACTCTAACCTTTCGATAATTTCCCAGAAGATGTTGGAGCTTCGTTTAGTTCAAGGTT 133
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CACACTCTAAGCTTTCGATAATTTCCCAGAAGATGTTGGAGCTTCGTTTAGTTCAAGGTT 119
Query 134 CTCTACTGAAGAAGGTTCTAGAAGCGGTCAAAGATCTGGTGAACGATGCGAACTTCGACT 193
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 CTCTACTAAAGAAGGTTCTAGAAGCGGTCAAAGATCTTGTGAACGATGCGAACTTCGACT 179
Query 194 GTTCGACCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGCCATGTCGCGTTGGTGTCTC 253
|||| | ||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 180 GTTCAAGCACAGGGTTCTCGCTTCAAGCTATGGATTCGAGTCACGTCGCGTTGGTGTCTC 239
Query 254 TTTTGCTTAGATCTGAAGGTTTCGAGCACTATAGATGCGATAGGAACCTCTCTATGGGAA 313
|||||||||||||||||||||| ||||| ||||| ||||||||||| || || ||||| |
Sbjct 240 TTTTGCTTAGATCTGAAGGTTTTGAGCATTATAGGTGCGATAGGAATCTTTCCATGGGGA 299
Query 314 TGAATCTTGGTAATATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACCA 373
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 300 TGAATCTTGGTAACATGTCTAAGATGCTGAAATGTGCTGGAAATGATGATATCATCACTA 359
Query 374 TCAAAGCTGATGATGGTAGCGACACTGTTACTTTCATGTTTGAGAGTCCCACACAAGACA 433
|||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 360 TCAAGGCTGATGATGGTAGCGACACTGTGACGTTCATGTTTGAGAGTCCCACGCAAGACA 419
Query 434 AGATTGCAGATTTTGAGATGAAGCTGATGGATATCGACAGTGAGCATTTAGGAATTCCTG 493
||||||| || ||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 420 AGATTGCTGACTTTGAGATGAAGCTGATGGATATTGACAGTGAGCATTTAGGAATACCTG 479
Query 494 ATGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAG 553
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATGCTGAGTACCACTCAATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAG 539
Query 554 ATCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTT 613
|||||||||| |||||||| |||||||||||||| || || ||||||||||| |||||||
Sbjct 540 ATCTCAGTAGTATTGGTGATACAGTTGTGATCTCTGTGACCAAAGAAGGGGTCAAGTTTT 599
Query 614 CAACAGCAGGTGATATCGGGACAGCAAACATTGTGCTCAGGCAGAATACTACCGTCGACA 673
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 600 CAACAGCAGGTGATATCGGGACAGCAAACATTGTACTCAGGCAGAATACTACTGTCGACA 659
Query 674 AACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGA 733
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACCTGAAGATGCTATTGTGATAGAGATGAACGAGCCTGTTTCGCTTTCATTTGCATTGA 719
Query 734 GGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACCATCAGTTTGT 793
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 720 GGTACATGAACTCCTTCACAAAGGCTACTCCATTGTCGGAAACTGTGACGATCAGTTTGT 779
Query 794 CCTCTGAGTTACCGGTCGTGGTGGAGTACAAGGTGGCTGAGATGGGTTACATTCGATACT 853
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 780 CCTCTGAGTTACCGGTTGTGGTGGAGTACAAGGTTGCTGAGATGGGTTACATTCGATACT 839
Query 854 ATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACCAAACCAGAATAATGATGAATGTTTG 913
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 840 ATCTGGCGCCTAAGATTGAAGAAGAAGAAGACACTAAGCCCTAATAATGATGAATGTTTT 899
Query 914 ATAGTCTTCGTTCGAGTCCTTT-GTTGAAATGTCTGTCTTGATTCAGTTGTTTTCTGGAT 972
|||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 900 TTAGTTTTCGTTTAAGTCCTTTTGTTGAAATGTCTGTCTTGATTCAGTTGTTTTCTGGAT 959
Query 973 TTACTATCTTAAGGCAATGCTAAACTAGATAATCGTATG--ATGTTTGTCTT-TCTGAAA 1029
||||||| ||||||||| | |||||||||||||| ||| | ||||||||| | || ||
Sbjct 960 TTACTATGTTAAGGCAACGGTAAACTAGATAATCAAATGTCA-GTTTGTCTTAT-TGCAA 1017
Query 1030 TTTGGAAAAGCTTGTTTATAACACTTTTCATCTGTTTGTTA-AACATTGAAGAAAAAGAA 1088
|||| ||||||||||| ||||| || ||||||||||||||| || |||||||||||||||
Sbjct 1018 TTTGAAAAAGCTTGTT-ATAACTCTATTCATCTGTTTGTTAGAAGATTGAAGAAAAAGAA 1076
Query 1089 GACACGAAGCCCTAAAACACGTTTGTTTGTGGCTTCTGCAACCTC 1133
||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1077 GACACAAAGCCCTAAAACACGTTTGTTTGTGGCTTCTGCAACCTC 1121
> Ahg934259 jgi|Araly1|934259|scaffold_402247.1
Length=349
Score = 206 bits (111), Expect = 4e-52
Identities = 123/129 (95%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 495 TGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGA 554
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 116 TGCTGAGTACCACTCAATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGAAATGCAAAGA 175
Query 555 TCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTTC 614
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 176 TCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGGGGTGAAGTTTTC 235
Query 615 AACAGCAGG 623
||||| |||
Sbjct 236 AACAGTAGG 244
> Ahg926461 jgi|Araly1|926461|scaffold_202022.1
Length=308
Score = 200 bits (108), Expect = 2e-50
Identities = 122/129 (95%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 495 TGCTGAGTACCACTCGATTGTGAGAATGCCTTCTGGTGAATTTTCCAGGATATGCAAAGA 554
||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 116 TGCTGAGTACCACTCAATTGTGAGAATGCCTTTTGGTGAATTTTCCAGGAAATGCAAAGA 175
Query 555 TCTCAGTAGCATTGGTGACACAGTTGTGATCTCGGTAACAAAAGAAGGGGTGAAGTTTTC 614
||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 176 TCTCAGTAGTATTGGTGACACAGTTGTGATCTCTGTGACAAAAGAAGGGGTGAAGTTTTC 235
Query 615 AACAGCAGG 623
||||| |||
Sbjct 236 AACAGTAGG 244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42240192036
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5