BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29580.1
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344719 jgi|Araly1|344719|fgenesh1_pg.C_scaffold_4001061 2178 0.0
Ahg470757 jgi|Araly1|470757|fgenesh2_kg.1__711__AT1G07360.1 1177 0.0
> Ahg344719 jgi|Araly1|344719|fgenesh1_pg.C_scaffold_4001061
Length=1395
Score = 2178 bits (1179), Expect = 0.0
Identities = 1328/1400 (95%), Gaps = 10/1400 (1%)
Strand=Plus/Plus
Query 89 ATGGCGCATAGAATACTGAGAGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCCA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCATAGAATACTGAGAGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCCA 60
Query 149 ATCATCTGTGAGTCTTGTCTCGGTGACAATCCTTACGTGAGAATGACAAAGGCGAATTAC 208
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ATCATCTGCGAGTCTTGTCTCGGTGACAATCCTTACGTGAGAATGACAAAGGCAAATTAT 120
Query 209 GATAAAGAGTGTAAGATCTGTACCCGGCCTTTCACGGTTTTCAGATGGCGACCTGGTAGG 268
||||| || || ||||||||||| |||||||||||||| ||||| ||||||||||| |
Sbjct 121 GATAAGGAATGCAAGATCTGTACTCGGCCTTTCACGGTATTCAGGTGGCGACCTGGCCGA 180
Query 269 GATGCGAGATACAAGAAGACTGAAGTTTGTCAGACATGTTGCAAGTTGAAGAATGTGTGC 328
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 GATGCGAGATACAAGAAGACTGAAGTTTGTCAGACATGTTGCAAGCTGAAGAATGTGTGT 240
Query 329 CAAGTTTGTCTCTTGGATCTTGAGTATGGTCTTCCAGTTCAGGTCAGAGACACGGCGCTC 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAAGTTTGTCTCTTGGATCTTGAGTATGGTCTTCCAGTTCAGGTCAGAGACACGGCGCTC 300
Query 389 AACATTAGTACTCATGATTCTATCCCAAAAAGTGATGTGAACCGAGAGTTTTTCGCTGAA 448
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 AACATTAGTACTCATGATTCTATCCCAAAAAGTGATGTGAACCGCGAGTTTTTCGCTGAA 360
Query 449 GAGCATGATCGAAAGACGAGAGCTGGACTAGATTATGAGTCTTCTTTTGGGAAGATTCGG 508
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAGCATGATCGAAAGACGAGAGCTGGACTAGATTATGAGTCTTCTTTTGGGAAGATTCGA 420
Query 509 CCCAACGATACCATTCGTATGCTTCAAAGGACAACGCCTTACTACAAAAGGAACCGAGCT 568
|| || |||||||| ||||||||||||||||||||||| || || |||||||| |||||
Sbjct 421 CCTAATGATACCATCCGTATGCTTCAAAGGACAACGCCATATTATAAAAGGAATCGAGCA 480
Query 569 CATATTTGTAGTTTCTTCATTAGGGGAGAGTGTACAAGAGGTGATGAGTGTCCATACCGT 628
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 CATATTTGTAGTTTCTTCATTAGGGGAGAGTGTACAAGAGGTGCTGAGTGTCCATACCGT 540
Query 629 CATGAGATGCCTGAAACAGGAGAGTTATCCCAGCAGAACATTAAAGACCGTTATTATGGT 688
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 541 CATGAGATGCCTGAAACAGGGGAGTTATCCCAGCAGAACATTAAAGACCGTTACTATGGT 600
Query 689 GTAAACGATCCAGTTGCGTTGAAGTTACTTGGCAAGGCTGGGGAGATGGGTACTTTGGAA 748
||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 601 GTAAATGATCCAGTTGCGTTGAAGTTACTTGGCAAGGCTGGTGAGATGGGCACTTTGGAA 660
Query 749 TCTCCAGAGGATCAAAGCATCAGAACGCTTTATGTTGGTGGGCTAAACTCGAGAGTCCTT 808
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTCCAGAGGATCAAAGCATCAAAACGCTTTATGTTGGTGGGCTAAACTCGAGAGTCCTT 720
Query 809 GAGCAAGACATTCGTGATCAATTCTACGCCCATGGAGAAATCGAATCCATCAGAATCTTG 868
|||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 721 GAGCAAGACATTCGCGATCAATTCTACGCCTATGGAGAAATCGAATCCATTAGAATCTTG 780
Query 869 GCTGAGAAAGCATGTGCGTTTGTCACTTACACAACCCGAGAAGGAGCAGAGAAAGCTGCA 928
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 781 GCTGAGAAAGCATGTGCGTTTGTCACATACACAACCCGAGAAGGCGCAGAGAAAGCAGCA 840
Query 929 GAAGAGCTCAGTAACAGGCTAGTTGTCAACGGTCAGAGGCTAAAACTCACATGGGGAAGA 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GAAGAGCTCAGTAACAGGCTAGTTGTCAACGGTCAGAGGCTAAAACTCACATGGGGAAGA 900
Query 989 CCTCAGGTTCCCAAACCTGATCAAGATGGTTCTAACCAACAGGGCAGTGTGGCTCATAGT 1048
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCTCAGGTTCCCAAACCTGATCAAGATGGTTCTAACCAACAGGGCAGTGTGGCTCATAGT 960
Query 1049 GGTTTACTACCTCGAGCAGTTATATCTCAGCAACAGAATCAACCTCCACCAATGCTA-CA 1107
|||||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||
Sbjct 961 GGTTTACTACCTCGAGCAGTTATATCTCAGCAACAGAATCAACCTCCA--A-TGC-AGCA 1016
Query 1108 ATACTATATGCACCCACCACCACCACAACCTCCTCATCAAGACAGACCATTTTACCCATC 1167
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1017 ATACTATATGCACCCACCACCACCACAACCTCCTCATCAAGACAGACCCTTTTACCCATC 1076
Query 1168 AATGGACCCTCAGAGAATGGGTGCAGTTAGTTCGTCCAAAGAAAGCGGTTCAAGCACCAG 1227
||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||
Sbjct 1077 AATGGACCCTCAGAGAATGGGTGCAGTCATTTCGTCCCAAGACAGCGGTTCAAGCACCAG 1136
Query 1228 TGACAACAGAGGAGCTTCTTCTTCTTCTTACACTATGCCACCACATGGCCACTATCCTCA 1287
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 1137 TGACAACAGAGGAGCTTCTTCTTCTTCTTACTCGATGCCACCACATGGCCACTATCCGCA 1196
Query 1288 GCACCAGCCATACCCGCCACCATCATATGGAGGATATATGCAACCACCTTACCAGCAGTA 1347
||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1197 GCACCAGCCATACCCACCACCACCATATGGAGGATATATGCAGCCACCTTACCAGCAGTA 1256
Query 1348 TCCTCCTTACCACCATGGCCATTCACAACAAGCTGATCATGATTACCCACAACAACCAGG 1407
|||||||||||| ||||||| ||| ||||||| |||| || ||| |||||||| ||
Sbjct 1257 TCCTCCTTACCAACATGGCC---CACCGCAAGCTGCTCATCCTTCCCCGCAACAACC-GG 1312
Query 1408 TCCC-GGTTCAAGGCCTAATCCTCCACATCCAAGTTCAGTCTCTGCTCCACCACCTGACT 1466
| || ||||||||||| ||| |||| | ||||||||||||| ||||||||||||||||||
Sbjct 1313 TTCCTGGTTCAAGGCCCAATGCTCCTCCTCCAAGTTCAGTCGCTGCTCCACCACCTGACT 1372
Query 1467 CTGTGTCTGCAGCACCTTCA 1486
||||||||||||||||||||
Sbjct 1373 CTGTGTCTGCAGCACCTTCA 1392
> Ahg470757 jgi|Araly1|470757|fgenesh2_kg.1__711__AT1G07360.1
Length=1556
Score = 1177 bits (637), Expect = 0.0
Identities = 1040/1228 (85%), Gaps = 53/1228 (4%)
Strand=Plus/Plus
Query 88 AATGGCGCATAGAATACTGAGAGATCACGAGGCTGATGGATGGGAACGTTCTGATTTCCC 147
|||||| || ||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 65 AATGGCTCACAGAATACTGAGAGATCATGAAGCTGATGGATGGGAACGCTCTGATTTCCC 124
Query 148 AATCATCTGTGAGTCTTGTCTCGGTGACAATCCTTACGTGAGAATGAC-AAAGGCGAATT 206
||||||||| || ||||||||||||||||| || |||||| ||||||| ||| |||||||
Sbjct 125 AATCATCTGCGAATCTTGTCTCGGTGACAACCCCTACGTGCGAATGACTAAA-GCGAATT 183
Query 207 ACGATAAAGAGTGTAAGATCTGTACCCGGCCTTTCACGGT-TTTCAGATGGCGACCTGGT 265
| ||||| || || ||||| ||||| || ||||||||||| ||| || |||||||||||
Sbjct 184 ATGATAAGGAATGCAAGATTTGTACACGACCTTTCACGGTGTTT-AGGTGGCGACCTGGC 242
Query 266 AGGGATGCGAGATACAAGAAGACTGAAGTTTGTCAGACATGTTGCAAGTTGAAGAATGTG 325
| ||||| ||||||||||| || ||| |||||||||| ||||||||| | || |||||
Sbjct 243 CGCGATGCTAGATACAAGAAAACCGAAATTTGTCAGACTTGTTGCAAGCTCAAAAATGTA 302
Query 326 TGCCAAGTTTGTC-TCTTGGATCTTGAGTATGGTCTTCCAGTTCAGGTCAGAGACACGGC 384
|| ||||| |||| || |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 303 TGTCAAGTCTGTCTTC-TGGATCTTGAGTATGGTCTTCCAGTTCAAGTCAGAGACACAGC 361
Query 385 GCTCAACATTAGTACTCATGATTCTATCCCAAAAAGTGATGTGAACCGAGAGT-TTTTCG 443
|||||||||||||||||||| |||||||| ||||||||||| ||| |||||| |||| |
Sbjct 362 CCTCAACATTAGTACTCATGACTCTATCCCTAAAAGTGATGTCAACAGAGAGTATTTT-G 420
Query 444 CTGAAGAGCATGATC-GAAAGACGAGAGCTGGACTAGATTATGAGTCTTCTTTTGGGAAG 502
|||||||||| || | ||||||| ||||||||||| |||||||| ||||| || ||||||
Sbjct 421 CTGAAGAGCACGA-CAGAAAGACTAGAGCTGGACTGGATTATGAATCTTCATTCGGGAAG 479
Query 503 ATTCGGCCCAACGATACCATTCGT-ATGCTTCAAAGGACAACGCCTTACTACAAAAGGAA 561
|| || || || ||||| ||| | | ||||||||| ||||| || ||||| || |||||
Sbjct 480 ATGCGACCTAATGATACTATT-TTAAAGCTTCAAAGAACAACACCATACTATAAGAGGAA 538
Query 562 CCGAGCTCATATTTGTAGTTTCTTCATTAGGGGAGAGTGTACAAGAGGTGATGAGTGTCC 621
|||||| ||| |||||||||||||||| ||||| |||||||||||||||| || |||||
Sbjct 539 CCGAGCACATGTTTGTAGTTTCTTCATCAGGGGTGAGTGTACAAGAGGTGCCGAATGTCC 598
Query 622 ATACCGTCATGAGATGCCTGAAACAGGAGAGTTATCCCAGCAGAACATTAAAGACCGTTA 681
|||||| ||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct 599 ATACCGGCATGAGATGCCCGAAACAGGAGAGCTATCCCAGCAAAACATTAAAGACCGTTA 658
Query 682 TTATGGTGTAAACGATCCAGTTGCGT-TGAAGTTACTTGGCAAGGCTGGGGAGATGGGTA 740
||||||||| || ||||||||||| | ||||||| || ||||| ||||| |||||||| |
Sbjct 659 TTATGGTGTTAATGATCCAGTTGC-TATGAAGTTGCTCGGCAAAGCTGGTGAGATGGGCA 717
Query 741 CTTTGGAATCTCCAGAGGATCAAAGCATCAGAACGCTTTATGTTGGTGGGCTAAACTCGA 800
|||||||||| ||||| ||| ||||||| | ||||||||| || ||||| || |||||||
Sbjct 718 CTTTGGAATCACCAGATGATGAAAGCATTAAAACGCTTTACGTCGGTGGACTTAACTCGA 777
Query 801 GAGTCCTTGAGCAAGACATTCGTGATCAATTCTACGCCCATGGAGAAATCGAATCCATCA 860
|| |||| ||||| ||||| | || || ||||| || |||||||||||||||||||||
Sbjct 778 GAATCCTCGAGCAGGACATAAGAGACCAGTTCTATGCTTATGGAGAAATCGAATCCATCA 837
Query 861 GAATCTTGGCTGAGAAAGCATGTGCGTTTGTCACTTACACAACCCGAGAAGGAGCAGAGA 920
||||||||||||| ||||| |||||||||||||| ||||||| |||||||||||||||||
Sbjct 838 GAATCTTGGCTGATAAAGCTTGTGCGTTTGTCACATACACAAGCCGAGAAGGAGCAGAGA 897
Query 921 AAGCTGCAGAAGAGCTCAGT-AACAGGCTAGTTGTCAACGGTCAGAGGCTAAAACTCACA 979
| || ||| ||||||| | ||||||||||||||||| |||||||||||||| ||||||
Sbjct 898 AGGCCGCACTAGAGCTC-GCCAACAGGCTAGTTGTCAATGGTCAGAGGCTAAAGCTCACA 956
Query 980 TGGGGAAGACCTCAGGTTCCCAAACCTGATCAAGATGGTTCTAACCAACAGGGCAGTGTG 1039
||||||||||| || || ||||||||||||||||| |||||||| || |||||
Sbjct 957 TGGGGAAGACC-CA-------AA-CCTGATCAAGATGGTTCAAACCAACAAGGTGGTGTG 1007
Query 1040 GCTCATAGTGGTTTACTACCTCGAGCAGTTATATCTCAGCAACAGAATCAACCTCCACCA 1099
|||||||||||||||||||||||||| |||||||||||||| || |||||||| ||| ||
Sbjct 1008 GCTCATAGTGGTTTACTACCTCGAGCCGTTATATCTCAGCAGCATAATCAACCCCCAGCA 1067
Query 1100 ATGCTACAATACTATATGCACCCACCACCACCACAACCTCCTCATCAAGACAGACCATT- 1158
|||| ||| ||||| |||||||||| |||| | |||| | | |||| ||| ||
Sbjct 1068 ATGCAACAGTACTACATGCACCCACTACCAGCT-AACC-----A--A-GACAAACC-TTA 1117
Query 1159 TTACCCATCAATGGACCCTCAGAGAATGGGTGCAGTTAGTTCGTCCAAAGAAAGC-GGT- 1216
|||||||||||||||||| ||||||||||||||||| | ||| || |||| || |||
Sbjct 1118 TTACCCATCAATGGACCCACAGAGAATGGGTGCAGTCATTTCAACCCAAGAG-GCTGGTG 1176
Query 1217 -T-CAAGCACCAGTGACAACAGA-GGAGCTTCTTCTTCTTCTTACACTA-TGCCACCACA 1272
| ||||||| ||| |||| | |||||||| ||||||||||||| | |||| |||||
Sbjct 1177 GTTCAAGCAC---TGAGAACA-ACGGAGCTTCATCTTCTTCTTACA-TGGTGCCTCCACA 1231
Query 1273 TG-GCCACTATCCTCAGCACCAGCCATA 1299
| |||| || || || ||||| |||||
Sbjct 1232 TCAGCCA-TA-CC-CACCACCA-CCATA 1255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64448694540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5