BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29590.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481873 jgi|Araly1|481873|fgenesh2_kg.4__933__AT2G29590.1 813 0.0
> Ahg481873 jgi|Araly1|481873|fgenesh2_kg.4__933__AT2G29590.1
Length=599
Score = 813 bits (440), Expect = 0.0
Identities = 521/560 (93%), Gaps = 5/560 (1%)
Strand=Plus/Plus
Query 82 TGAGGCACCGCGAGTTGAAGAATTTTTAGGTG-AAGGGAAAAGCTTCTACGAGAATTTTA 140
||||||||||||||| ||||| || ||||| | |||| ||||||||||| ||| | ||||
Sbjct 43 TGAGGCACCGCGAGTGGAAGAGTTCTTAGG-GAAAGGAAAAAGCTTCTATGAGGACTTTA 101
Query 141 GTCTCAGAGGAATCCGAGTCAACCGAGTCGAACCGGGTTTCATTTCCTGCTCTTTCAAGG 200
| |||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||
Sbjct 102 GCCTCAGAGGAATCCGAGTCAACCGAGTCGAACCTGATTTCATTTCTTGCTATTTCAAGG 161
Query 201 TTCCTCTTCGTTTGACGGACAGAGACAAGAATTTAGCAAATGGTGCGATTGCAAATCTTG 260
| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 162 TCCCTCTTCGTTTGACGGACAGAGATGGGAATCTAGCAAATGGTGCGATTGCAAATCTTG 221
Query 261 TGGATGAAGTTGGTGGAGCACTTGTACATGGCGAAGGCTTACCTATGAGTGTTTCAGTGG 320
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 222 TGGATGAAGTTGGTGGAGCACTTGTACATGTTGAAGGTTTACCTATGAGTGTTTCAGTGG 281
Query 321 ACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGA 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 ACATGTCTATTGCATTCCTTTCAAAAGCTAAGCTTGGTGAGGAGTTGGAGATAACGTCGA 341
Query 381 GATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTAGTCAGAAACAAGATGA 440
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 342 GATTGTTAGGAGAGAGAGGAGGTTATAAAGGAACAATCGTTGTTGTGAGAAACAAGATGA 401
Query 441 CCGGGGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCT 500
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 CCGGAGAGATTATAGCGGAAGGTCGACATTCTATGTTTGGTAGACAAGCTAGTAAGCTCT 461
Query 501 GAGTCCAACTTTTAAGTCTTGT-ATCACTGTAATGTCTGTTTTCAATAATAAGATTATGG 559
||| ||||||||||||| || | |||||||| |||| |||||||| ||||| ||||||||
Sbjct 462 GAGCCCAACTTTTAAGTGTT-TCATCACTGTTATGTTTGTTTTCAGTAATAGGATTATGG 520
Query 560 TTAGGTAAATTTGGTTAGGTCCTTTGTTCTTTCTGGTTGTGAATCTAAAACCTTGGTACA 619
| |||||||||||||||| | ||||||||||| |||||||||||||||||||| |||||
Sbjct 521 T-AGGTAAATTTGGTTAGTTAGTTTGTTCTTTCAGGTTGTGAATCTAAAACCTTTGTACA 579
Query 620 TAGCTTATAAAGATCAAACC 639
||||||||||||||||||||
Sbjct 580 TAGCTTATAAAGATCAAACC 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5