BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29605.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327206 jgi|Araly1|327206|fgenesh1_pm.C_scaffold_6002426 403 1e-111
Ahg924268 jgi|Araly1|924268|scaffold_105549.1 250 2e-65
Ahg483202 jgi|Araly1|483202|fgenesh2_kg.4__2262__AT2G41310.1 147 3e-34
> Ahg327206 jgi|Araly1|327206|fgenesh1_pm.C_scaffold_6002426
Length=1119
Score = 403 bits (218), Expect = 1e-111
Identities = 365/435 (84%), Gaps = 14/435 (3%)
Strand=Plus/Plus
Query 429 TCAGCAAAATCATATATGGTCTACACCAAATAATCATGCTTGTACCAATCTTGGAGCTTC 488
||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 555 TCATCAAAATC--A-ATGGTCTACACCAAATAATCATGCTTGTACCAATCTTGGAGCTCC 611
Query 489 TACCATTCCACCAGCAGCTAATGATCAATGGTTTCCTTATAAG-GATCCTGCGTGTTCCC 547
||| ||||||| |||||||||||||||||||||||||||| | |||||||||||| ||
Sbjct 612 TACTGTTCCACCGGCAGCTAATGATCAATGGTTTCCTTATA-GTGATCCTGCGTGTACCA 670
Query 548 ATCTTGGAGCTCCTATCGTTCCACCAGAAGCTTATGGTCAATTGTTGCCATATACTGATC 607
||||||||||||||| || | |||||| |||| ||| |||| |||| || || |||||
Sbjct 671 ATCTTGGAGCTCCTACCGATGCACCAGCAGCTAATGATCAACGGTTGACAGATTTTGATC 730
Query 608 TTGCGTATTACTATCCAGTACTATATTCAACCGCTGCACCAGCAGCTACTACTCAATGGC 667
||| |||||| |||| ||| ||| | || ||| |||||||| ||||||| ||||||| |
Sbjct 731 CTGCATATTACGATCCTGTA-TAT-T-CAGCCGTTGCACCAGTAGCTACTGCTCAATGCC 787
Query 668 CGACATCTACTGATTTTGCTTATACTGGAGGTCCAACTCTTCCAAAAGCACCTACTGCGG 727
| ||||||| |||| ||||||||||| ||| || |||| || ||||||||||||||||||
Sbjct 788 CAACATCTAATGATCTTGCTTATACTAGAGCTCTAACTGTTGCAAAAGCACCTACTGCGG 847
Query 728 CATTTGATCATTTTAGAGATG-GTTTCGGAGAAGATATTGACAATAGCAG-CCCAAATTT 785
||||||| ||||||| ||||| |||| ||||| |||||||| |||||| | |||||||||
Sbjct 848 CATTTGACCATTTTACAGATGAGTTT-GGAGACGATATTGAAAATAGC-GTCCCAAATTT 905
Query 786 CCAGCAGATGGATCCTTTAGCAGCCGCACTACAAACGCTACCCGATG-ACATGCTACAAG 844
||||||||||||||||| | |||| | || || |||| || ||| | || ||||| | |
Sbjct 906 CCAGCAGATGGATCCTTCAACAGCAGAACAACTGACGCAACTCGA-GCACCTGCTAGATG 964
Query 845 AGCTATATCAACAAT 859
| | |||| |||||
Sbjct 965 ACCAATATGGACAAT 979
Score = 287 bits (155), Expect = 1e-76
Identities = 218/248 (88%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 1 ATGAGCGAACCATGTCGTCTCAATCTTCTCTGCAGCTGCAATCGTCGTAACGTTTCAGAG 60
|||||| | |||| ||||| ||||||||||||||||||| | ||| | | |||||| ||
Sbjct 1 ATGAGCTATCCATCTCGTCACAATCTTCTCTGCAGCTGC-A--GTCATGATGTTTCACAG 57
Query 61 ACCATAGACACTATAAAGAACATAATCGCGACATGTATCCGCAAGTACATGAGTCTGGAA 120
| ||||||| ||||||||||||||||| ||||||||| | |||||||||||| ||||
Sbjct 58 ATCATAGACTTTATAAAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAG 117
Query 121 GAAACAGTGAA-TTATATGCAGGAAAATCACAAGATTAGTCACCATCTCACCAAACCAAT 179
||||| || || |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 118 GAAACGGT-AACATATATGGAGGACAATCACAAGATTAGTCACCATCTCACCAAACCAAT 176
Query 180 ATGGGAGCAGCTTCAGAAAGAGAATGCAGATTTTTTCAACAAGTACCACTTAATACGCGA 239
||||||||||||||||||||||| | |||| |||||||||||||||||||||| ||||||
Sbjct 177 ATGGGAGCAGCTTCAGAAAGAGAGTCCAGAGTTTTTCAACAAGTACCACTTAAAACGCGA 236
Query 240 ATTAGCGC 247
||||||||
Sbjct 237 ATTAGCGC 244
> Ahg924268 jgi|Araly1|924268|scaffold_105549.1
Length=584
Score = 250 bits (135), Expect = 2e-65
Identities = 277/340 (81%), Gaps = 32/340 (9%)
Strand=Plus/Plus
Query 1 ATGAGCGAACCATGTCGTCTCAATCTTCTCTGCAGCTGCAATCGTCGTAACGTTTCAGAG 60
|||||||| |||| ||||| ||||||||||||||||||| | ||||||| ||||| ||
Sbjct 21 ATGAGCGATCCATATCGTCACAATCTTCTCTGCAGCTGC-A--GTCGTAATATTTCACAG 77
Query 61 ACCATAGACACTATAAAGAACATAATCGCGACATGTATCCGCAAGTACATGAGTCTGGAA 120
|||||||||||||||||||||||||||| ||||||||| | |||||||||||| |||||
Sbjct 78 ACCATAGACACTATAAAGAACATAATCGAGACATGTATTCAAAAGTACATGAGTTTGGAA 137
Query 121 GAAACAGTGA-ATTATATGCAGGAAAATCACAAGATTAGTCACCATCTCACCAAACCAAT 179
||||| |||| || || |||| || |||||||| |||||||| ||||||||||||||||
Sbjct 138 GAAACGGTGATAT-ATCTGCATGACAATCACAATATTAGTCATCATCTCACCAAACCAA- 195
Query 180 ATGGGAGCAGCTTCAGAAAGAGAATGCAGATTTTTTCAACAAGTACCACTTAATACGCGA 239
| | || | |||| | | |||| ||||||||||||||||| ||| ||
Sbjct 196 A-G--AGT--C--CAGA--G----T-----TTTT--CAACAAGTACCACTTAAAACGGGA 235
Query 240 ATTAGCGCGTCAAATAAA-ATTGTTTAATAGTTTTCTTGGAAAGCAAGTTTCTCTGAT-G 297
|||||||||| | |||| || || ||| ||||||||||||||||||||||||||||| |
Sbjct 236 ATTAGCGCGTTATATAACGAT-GTGTAACAGTTTTCTTGGAAAGCAAGTTTCTCTGATAG 294
Query 298 CTCGAGAATGGAGATTTTGATATTAGT-ACTGCAACATCT 336
||||| |||||| | ||||||| | | | |||| |||||
Sbjct 295 -TCGAGCATGGAGCTCTTGATATCAATTA-TGCACCATCT 332
Score = 99.0 bits (53), Expect = 7e-20
Identities = 68/75 (91%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 470 GTACCAATCTTGGAGCTTCTACCATTCCACCAGCAGCTAATGATCAATGGTTTCCTTATA 529
||||||| ||||| ||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 463 GTACCAACCTTGGCGCTCCTACCGTTCCACCAGCAGCTAATGATCAATGGTTTACTTATA 522
Query 530 AG-GATCCTGCGTGT 543
| ||||||||||||
Sbjct 523 -GTGATCCTGCGTGT 536
> Ahg483202 jgi|Araly1|483202|fgenesh2_kg.4__2262__AT2G41310.1
Length=1432
Score = 147 bits (79), Expect = 3e-34
Identities = 138/163 (85%), Gaps = 18/163 (11%)
Strand=Plus/Plus
Query 1051 GAAGTTGAATATCGA-GCAAACAGCAACGAGC-TGCAAGGAGTAATACCGCAGCAACA-- 1106
||| |||||||| || ||||||| ||||| | ||||||||||||||||||| |||||
Sbjct 988 GAA-TTGAATAT-GAGGCAAACAACAACG-CCTTGCAAGGAGTAATACCGCAACAACAGC 1044
Query 1107 ---A--C--ATCATCAGGAACAAGAAG-CAATGCAGACACAAGGAGATCCACTGAATCGA 1158
| | ||||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 1045 GTCATCCTTATCATCAGGAACAAG-AGACAAACCAGACACAAGGAGATCCACTGAATCGA 1103
Query 1159 ATACCTGTTCAATCT-GAAGCTTCAAACCATTCAGATAGTGGT 1200
|||| |||||||| | ||||||| |||||||||||||||||||
Sbjct 1104 ATACTTGTTCAAT-TAGAAGCTTTAAACCATTCAGATAGTGGT 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5