BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29620.1
Length=2577
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344726 jgi|Araly1|344726|fgenesh1_pg.C_scaffold_4001068 2333 0.0
Ahg470753 jgi|Araly1|470753|fgenesh2_kg.1__707__AT1G07330.1 154 3e-36
> Ahg344726 jgi|Araly1|344726|fgenesh1_pg.C_scaffold_4001068
Length=2217
Score = 2333 bits (1263), Expect = 0.0
Identities = 1543/1675 (92%), Gaps = 32/1675 (2%)
Strand=Plus/Plus
Query 1 ATGGGAAAATTTGATGCTAAAGATGTTTGCTTTATCGTTTGGAAAATTCTTAGATTCTCA 60
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGGAAAAATTGATGCTAAAGATGTTTGCTTTATGGTTTGGAAAATTCTTAGATTCTCA 60
Query 61 ACGAAAACAATTTTCAGATACGTGAAG-AGATACCCAATTGTTTCTGGTGTTTCTACGTT 119
||||| ||||||||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 61 ACGAATACAATTTTCAGATACGT-TAGAAGATACCCAATTGTTTCTGGTGTTTCTATGTT 119
Query 120 TTTGATCATCTTGTACACTTTTCTTCCTTGGGTTTTCTATTTTTTGCTCTGTTCTTCTCC 179
||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 TTTGATCGTCTTGTATACTTTTCTTCCTTGGGTTTTCTATTTCTTGCTCTGTTCTTCTCC 179
Query 180 TTTGATAGCTTTTGCTTCGTTTTATATACGGAATCATGATCTGAGTTCGAAGATTTGTGA 239
||||||||||||| |||||||||||||||||||||| |||||||| ||||||| ||||
Sbjct 180 GTTGATAGCTTTTGGTTCGTTTTATATACGGAATCATCATCTGAGTACGAAGATCGGTGA 239
Query 240 TGAAGACAAGAGAAAGGATCGTGGGTTAT-CTACGATTTCTCAAGAGGGAAGAACAGAGA 298
||| |||||||||| |||||||||||||| || |||||||||||||||||||||||||||
Sbjct 240 TGAGGACAAGAGAACGGATCGTGGGTTATCCT-CGATTTCTCAAGAGGGAAGAACAGAGA 298
Query 299 AGGCTAAGTTAAAGCATCAACAAAGTGTTAGACGAAATGCAAGAAGGAAAGTTGAAGAGG 358
|||||||||||||||| |||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 299 AGGCTAAGTTAAAGCACCAACAAAGTGTTCGACGAAATGCTAGAAGAAAAGTTGAAGAGG 358
Query 359 TTGGGAAAGATTGGGATTCGTCTCAAGCTAGTGAGGATGAGAGAGGTAAGGTTATTCTGA 418
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 359 TTGGGAAAGATTGGGATTCTTCTCAGGCTAGTGAGGATGAGAGAGGTAAGGTTATTTTGA 418
Query 419 CTACTCTCTATGGAGAAGTATTACCGGAGACGATTACACCAGATATGGAGAAATTCAAGA 478
||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 419 CTACTCTCTATGGGGAAGTATTACCGGAGACGATTAGTTCAGATATGGAGAAATTTAAGA 478
Query 479 GAGAAAGGACGTTGCTTGTTGCAGAAGAAAACGT-ATTTGACTCTGTTCTTGACAATCAC 537
|||| ||||||||||||||||| |||| |||| | ||| |||||||| ||| | |
Sbjct 479 GAGAGAGGACGTTGCTTGTTGCGGAAG-AAACCTCCTTTAACTCTGTTGTTG--AGT--- 532
Query 538 AGAGATCTTGTTGAATTAGAGAGGCTAATAAGTGTTGATGGTGATGATGAAAGTGAAGTT 597
||| || ||| |||||| |||||||||||||| | | ||||||||||||| ||
Sbjct 533 -TAGA-----TT-CATTGGAGAGGTTAATAAGTGTTGAT-G-G-TGATGAAAGTGAAATT 582
Query 598 GAATGTtcatcatcatcatcatcGGAAGGAGAAAAGGAAGAAGAAGAAAGGCGTGAAGAT 657
||||||||||||| ||||||| |||| ||||| |||||||||||||||||| ||||||
Sbjct 583 GAATGTTCATCATTATCATCAGAAGAAGAAGAAAGGGAAGAAGAAGAAAGGCGCGAAGAT 642
Query 658 GTAAGCAAGGTTGTAGTGGCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGG 717
|| ||||| | ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATAGGCAAGATCGTAGTACCGTGGACAGAGGATGATCAGAAGAATTTGATGGATCTTGGG 702
Query 718 ACATCTGAGATCGAACGAAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAGGTCAAGG 777
||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 703 ACATCTGAGATTGAAAGGAACAAGAGGTTAGAGAATTTGATTTCTAGAAGAAGATCAAGG 762
Query 778 AGATTTTTCTTACTTGCAGCTGAAGGAAGCTTGATGGATGATATGGAAGTTCCTCGGATT 837
||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||
Sbjct 763 AGATTTTTCTTACTTGCTGCTGAAGGAAGCTTGAT-G--GATATGGAAGTTCCTCGGATT 819
Query 838 TGTATTGGTCGAAACTTTTATGGTTTCGATAAAGGAAACTACGAAATCGATGGACTTGTC 897
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 820 TGTATTGGTCGAAACTTTTATGATTTCGATAAAGGAAACTACGAAATCGATGGACTTCTC 879
Query 898 ATGCCAGGCTCTGCACCTTCCGTTTTATTACCAAGAAGAAACCCATTTGACCTTCCTTAC 957
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 880 ATGCCAAGCTCTGCACCTTCTGTTTTATTACCAAGAAGAAACCCATTTGACCTTCCTTAC 939
Query 958 GATCCGT-TGGAAGAGAAACCAAACCTAACAGGAGATAGTTTTCAACAAGAGTTTGCTGA 1016
||||| | ||||||||||||| ||| | ||||||||||||||||| ||||||||||||||
Sbjct 940 GATCC-TCTGGAAGAGAAACCGAACTTGACAGGAGATAGTTTTCAGCAAGAGTTTGCTGA 998
Query 1017 GACTAACCCTAAAGATATCTTCTTTTGCCGCCATGAGAGCTTCCATCACA-GAGCTTTTC 1075
|||||||| |||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 999 GACTAACCGGAAAGATATCTTCTTTTGCCGCCATGAGAGCTTCCATCACAGGA-TTTTTC 1057
Query 1076 CATCAGAATCTCAAAATGATTCTAAATTTACGTCTTTGTGGAGAAATGTAGTTGATGGTA 1135
|||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1058 CATCAGAATCTCAAAAAGATTCTAAATTGACGTCTTTGTGGAGAAATACAGTTGATGGTA 1117
Query 1136 GGCCTAGGCCACTACAAGGTAGCAATAATCAGGAACCTCTAATGAAAGAGAGA-GAGAAA 1194
|||||| ||||||||||||||||||| |||| | ||||||||||||||| ||| || |||
Sbjct 1118 GGCCTAAGCCACTACAAGGTAGCAATGATCAAGCACCTCTAATGAAAGAAAGAGGA-AAA 1176
Query 1195 GGAAATGATATGGAGGCAGGAGAGGTACGGATAGAGACAGATTCCATCAGAAACGATGAT 1254
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1177 GGAAATGATATGGAGGCAGGGGAGGTACGGATAGAGACGGATTCCATCAGAAACGATGAT 1236
Query 1255 AGTGACTCGAACGCATCGCTTTCTCCACGAGAAAGAGAGAAGGATTTCAATGTCTCAG-A 1313
|||||||||||||||||||||||||||||||||||||| || |||||||||| ||| | |
Sbjct 1237 AGTGACTCGAACGCATCGCTTTCTCCACGAGAAAGAGACAAAGATTTCAATGCCTC-GTA 1295
Query 1314 CCAATCAGATGCTTCTGGAACTTTCTGCAAACGAAATGATCGTGTTGGAAACTCTGTTGC 1373
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1296 CCAATCAGATGCTTCCGGAACTTTCTGCAAACGAAATGATCGTCTTGGAAACTCTGTTGC 1355
Query 1374 GGGTTTAGTGCCTAGAAGCAGTGGTTCGAGTTCACTAGCAACCGCGAGGCAAAGATACAT 1433
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1356 GGGTTTAGTGCCTAGAAGCAGTGGTTCGAGTTCACTAGCAACTGAAAGGCAAAGATACAT 1415
Query 1434 GGAGCATTTTGGTTACAATACAAGAAAATGTCATATGGTGACACATTCTGTTGACTCTGA 1493
||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||||||
Sbjct 1416 GGAGCATTTTGGTTACAGTACAAGAAAGTCTCATATGGTTACACATTCTGTTGACTCTGA 1475
Query 1494 TCTTCAAGTTGAGGTTTCTGAACTTGGATCACCTCCAACTTCAGTTGATGGTAATGACTC 1553
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1476 TCTTCAAGTTGAGGTTTCTGAACTTGGATCACCTCCCACTTCAGTTGATGGGAATGACTC 1535
Query 1554 TGATTATGAAAGATCTCTGTTTGTTTATGAATCGGAGATGGGAAAAGAAATGGGTTATAA 1613
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1536 TGATTATGAGAGATCTCTGTTTGTTTATGAATCGGAGATCGGAAAAGAAATGGGTTTTAA 1595
Query 1614 TGGTGTGGAATCTGAAGTCTTACTTGTGGGGAAAGATGATCAAGATCAAAATGAA 1668
||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1596 TGGTGGGGAATCTGAAGTCTTACTTGTGGGGAAAGATTATCAAGATCTAAATGAA 1650
Score = 490 bits (265), Expect = 2e-137
Identities = 327/354 (92%), Gaps = 15/354 (4%)
Strand=Plus/Plus
Query 1756 GATGAGGAGTTGAAGGAACTTTCC-GAGAACTCAGCTGATGAGATAAAGATAAGTTATGA 1814
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1687 GATGAGGAGTTGAAGGAAC-TTCCTGAGAACTCAGCTGATGAGATAAAGATAAGTTATGA 1745
Query 1815 CTCTG---ACGAACATGAACCATCCGAGAGGACGACTGATCAAGAATTTGAAGAACCTTA 1871
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1746 CTCTGTCGACGAACATGAACCATCCGAGAGGAC---TGATCAAGAATCTGAAGAACCTTA 1802
Query 1872 TGAGAGAAATGATGGAGAAGAAAGGCAACAACTCGTGGAAGCTGAAGCTTCTGATGTAAA 1931
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||| ||
Sbjct 1803 TGAGAGAAATGATGGAGAGGAAATGCAACAACTCGCGGAAGCTGAAGCTTCTGATGTTAA 1862
Query 1932 TCATCATGGAAACTCTGAAGAATCTGTTACTTCTCCAAGATCAGTGTTACCAGACATG-T 1990
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1863 TCATCATGGAAACTCTGAAGAGTCTGTTACTTCTCCAAGATCAGTGTTACCAGACATGAT 1922
Query 1991 -T-ACATCTAGACCAGACTGC-TTGGGAGGTTCTGGATCATGCATCTA-ATGGTCAGCTG 2046
| |||||||||||||||| | || ||||||||||||||| |||| | |||||||||||
Sbjct 1923 GTTACATCTAGACCAGACT-CATTCTGAGGTTCTGGATCATACATC-AGATGGTCAGCTG 1980
Query 2047 CAAAATGTGGATCCACCAGCTGAATCATCTCATTATCAATTAGATGGACGTATT 2100
|||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1981 CAAAATGTGGTTCCACCTGCTGAATCATCTCATTATCAATTAGATGAACGTATT 2034
Score = 215 bits (116), Expect = 1e-54
Identities = 135/144 (94%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 2102 ATGCCACAGGAACAATTCAGGAGAATCAAGAGGGATTTGAAGTAACATTCAATGATGAGT 2161
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2075 ATGCCACAGGAACATTTCAGGAGAATCAAGAGGGCTTTGAAGTAACATTCAATGATGAGT 2134
Query 2162 CTAATTCTGCAGAAGACCACAGACAGTCCATCGATCCATTGGCTGTAGAACTTGA-GAAC 2220
|||||||||| |||||||| |||||||||||| |||||||||||||||||||| | || |
Sbjct 2135 CTAATTCTGCTGAAGACCATAGACAGTCCATCAATCCATTGGCTGTAGAACTTAAAGA-C 2193
Query 2221 AATCAAACCGATGGAATCAATTGA 2244
||| ||||||||||||||||||||
Sbjct 2194 AATGAAACCGATGGAATCAATTGA 2217
> Ahg470753 jgi|Araly1|470753|fgenesh2_kg.1__707__AT1G07330.1
Length=2055
Score = 154 bits (83), Expect = 3e-36
Identities = 129/151 (85%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 287 GAAG-AAC-AGAGAAGGCTAAGTTAAAGCATCAACAAAGTGTTAGACGAAATGCAAGAAG 344
|||| ||| ||| |||||| | |||||||| |||| ||||||| |||||||||| |||||
Sbjct 91 GAAGAAACAAGA-AAGGCTGACTTAAAGCACCAACGAAGTGTTCGACGAAATGCCAGAAG 149
Query 345 GAAAGTTGAAGAGGTTGGGAAAGATTGGGATTCGTCTCAAGCTAGTGAGGATGAGAGAGG 404
|||||||||||||||||||||||||||||| || ||||| ||||| |||||||||||||
Sbjct 150 GAAAGTTGAAGAGGTTGGGAAAGATTGGGACTCTTCTCAGGCTAGCGAGGATGAGAGAGA 209
Query 405 TAAGGTTATTCTGACTACTCTCTATGGAGAA 435
|| || ||| | || ||||| ||||| |||
Sbjct 210 CAAAGTCATTTTAACAACTCTATATGGCGAA 240
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97168214995
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5