BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G29628.1

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933443 jgi|Araly1|933443|scaffold_401431.1                        135    5e-32


> Ahg933443 jgi|Araly1|933443|scaffold_401431.1
Length=214

 Score =  135 bits (73),  Expect = 5e-32
 Identities = 112/128 (88%), Gaps = 13/128 (10%)
 Strand=Plus/Plus

Query  1    ATGCAGCCTAAAGCGAAAGGC-TTGCTGACGTGTCCTCTTTCTCAGATATTTTGTCGAAA  59
            |||||||| |||||||||||| |||||||||||||| |||||||||||| ||| | |   
Sbjct  75   ATGCAGCCAAAAGCGAAAGGCTTTGCTGACGTGTCCACTTTCTCAGATA-TTT-T-G---  128

Query  60   ATTGGTGTCCGTTGATCAGGATAT-TAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC  118
            |     |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct  129  A----CGTCCGTTGATCAGGAT-TCTAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC  183

Query  119  ACGAGTAA  126
            ||||||||
Sbjct  184  ACGAGTAA  191



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3974977032


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5