BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29628.1 Length=126 Score E Sequences producing significant alignments: (Bits) Value Ahg933443 jgi|Araly1|933443|scaffold_401431.1 135 5e-32 > Ahg933443 jgi|Araly1|933443|scaffold_401431.1 Length=214 Score = 135 bits (73), Expect = 5e-32 Identities = 112/128 (88%), Gaps = 13/128 (10%) Strand=Plus/Plus Query 1 ATGCAGCCTAAAGCGAAAGGC-TTGCTGACGTGTCCTCTTTCTCAGATATTTTGTCGAAA 59 |||||||| |||||||||||| |||||||||||||| |||||||||||| ||| | | Sbjct 75 ATGCAGCCAAAAGCGAAAGGCTTTGCTGACGTGTCCACTTTCTCAGATA-TTT-T-G--- 128 Query 60 ATTGGTGTCCGTTGATCAGGATAT-TAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC 118 | |||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 129 A----CGTCCGTTGATCAGGAT-TCTAAGATAAGGTACGTGAGGAGGAGAACGTCGTTTC 183 Query 119 ACGAGTAA 126 |||||||| Sbjct 184 ACGAGTAA 191 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 3974977032 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5