BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29640.1
Length=1083
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481877 jgi|Araly1|481877|fgenesh2_kg.4__937__AT2G29640.1 837 0.0
> Ahg481877 jgi|Araly1|481877|fgenesh2_kg.4__937__AT2G29640.1
Length=1158
Score = 837 bits (453), Expect = 0.0
Identities = 480/493 (97%), Gaps = 2/493 (0%)
Strand=Plus/Plus
Query 17 CTAAAATCTATCACGAACGACAACGATTACAATTTTGCCTCTTGCACTGCCTCAACAATC 76
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 5 CTAAGATCTATCACGAACGACAACGATTACAATTTTGCCTCTTGCACTCCCTCAACAATC 64
Query 77 TATTTCAGGACAAAGACGCATTCACTAAAGAAAGCTTGAACTCAATCGCAGAGAAGCTCG 136
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 TATTTCAGGAAAAAGACGCATTCACTAAAGAAAGCTTGAACTCAATCGCAGAGAAGCTCG 124
Query 137 -AGACCAATGATCCAAACAAAGAAACATGGACACCTCTCTCTTTCGTCCTCAAGCCTCAC 195
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 125 TGGA-CGATGATCCAAACAAAGAAACATGGACACCTCTCTCTTTCCTCCTCAAGCCTCAC 183
Query 196 CACAATACAATCACTGGTAACTACGACGTAAACGTGATGATTACAGCTCTTGAAGGAAAA 255
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 184 CACAATACACTCACTGGTAACTACGACGTAAACGTGATGATTAAAGCTCTTGAAGGAAAA 243
Query 256 GGCAAGAGTGTTGTTTGGCATGATAAGCGTATTGGAGCTTCTTCGATTGATCTTGATGAT 315
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 244 GGCAAGAGTGTTGTTTGGCATGATAAGCGTAGTGGAGCTTCTTTGATTGATCTTGATGAT 303
Query 316 GCAGATACTTTAATGGGTATTGTGTTGAATGTTCCTGTTAAGAGATATGGTGGACTTTGG 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GCAGATACTTTAATGGGTATTGTGTTGAATGTTCCTGTTAAGAGATATGGTGGACTTTGG 363
Query 376 AGAAGTAGGCATTGGGTTGTTGTTAGAAAAATCAATGGTGTTTGGTATAATTTGGATAGT 435
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGAAGTAGGCATTGGGTTGTGGTTAGAAAAATCAATGGTGTTTGGTATAATTTGGATAGT 423
Query 436 GATCTCGTTGTGCCGCAGCTGTTTAGAGATGATGATGAAGTTAGAGGGTTCTTGGATCAA 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GATCTCGTTGTGCCGCAGCTGTTTAGAGATGATGATGAAGTTAGAGGGTTCTTGGATCAA 483
Query 496 AATCTGAGTTTAG 508
|||||||||||||
Sbjct 484 AATCTGAGTTTAG 496
Score = 656 bits (355), Expect = 0.0
Identities = 410/435 (94%), Gaps = 9/435 (2%)
Strand=Plus/Plus
Query 655 CCTCAAGTCTCAAGTAAGGTATCTGCAATATATAAAGCTACAGGAACAAAACGGTTCAAT 714
||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 727 CCTGAAGTCTCAAGTAAGGTATCAGCAATTTATAAAGCTACAGGAACAAAACGGTTCAAT 786
Query 715 GCAAACACTAGACCAGTAACTCCTGGTAAGCAATCCTCAGTCAAGGGACCATATTATAAG 774
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 787 GCAAACACTAGGCCAGTAACTCCTGGTAAGCAATCCTCAGTCAAGGGACCATATGGTAAG 846
Query 775 AATCCGGGATGCACAACAAGCTGTGGTTTGAGGCTACCGAGGAAAACGGAATGCACAGCA 834
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 847 AATCCGGGATGCACAACAAGCTGTGGTTTGAGGCTACCCAGGAAAACGGAATGCACAGCA 906
Query 835 GCAAGACTGATCAAAGATCTCAGCTGTAAATTCGTTATGGGCTTACGTCTGGTGGTGATG 894
||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 907 GCAAGACTGATCAAACATCTCAGCTATAAATTCGTTTTGGGCTTACGTCTGGTGGTGATG 966
Query 895 AGgaagaagaagaagaaga-ga--TCTCCACCATTGAAGAAGGCTTCTTCTTCTGGGATA 951
||||||||||||||||||| || ||||||||||| |||||||||||||||||||| |||
Sbjct 967 AGGAAGAAGAAGAAGAAGAAGAGATCTCCACCATTCAAGAAGGCTTCTTCTTCTGGTATA 1026
Query 952 TCTCAGCCTTCAGTCATCTCTGTCGTTAATGATAATAATCACAGATCAG-CGGCAATAGA 1010
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1027 TCTCAGCCTTCGGTCATCTCTGTCGTTAATGATAATAATCACAGATCAGACG-CAATAGA 1085
Query 1011 AGACTGCATACAATTCATAAACTCCTCTTCCTCCTTCACAAGATCAAATTCT-ACCTGTG 1069
||||||||||||||||||||||||||||||||| ||||||||||||| |||| || |||
Sbjct 1086 AGACTGCATACAATTCATAAACTCCTCTTCCTCTTTCACAAGATCAAGTTCTGACA-GTG 1144
Query 1070 G-CAGTAAATCTTAA 1083
| | |||||||||||
Sbjct 1145 GGC-GTAAATCTTAA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40334046186
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5