BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29660.1
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481881 jgi|Araly1|481881|fgenesh2_kg.4__941__AT2G29660.1 2237 0.0
> Ahg481881 jgi|Araly1|481881|fgenesh2_kg.4__941__AT2G29660.1
Length=1645
Score = 2237 bits (1211), Expect = 0.0
Identities = 1493/1618 (92%), Gaps = 63/1618 (4%)
Strand=Plus/Plus
Query 144 CGTACACTCACTCATATG--CACACACGAACCAATGCATCGGTAAGATTCGCataaacat 201
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CGTACACTCACTCATATGCACACACACGAACCAATGCATCGGTAAGATTCGCATAAACAT 122
Query 202 acaaaaaataggag-t-aa-a-taaac---caaata-aaaactaaagtgaggagacaaat 253
|| ||||||| || | || | ||||| |||| | |||| ||||||||||||||||||
Sbjct 123 AC--AAAATAGCAGTTAAACAGTAAACAAACAAAAATAAAATTAAAGTGAGGAGACAAAT 180
Query 254 attctaacacaaa-aaatagaaaataaaaataGCGTCACACCTACTC--T-TTCTTCTAC 309
||||||||| ||| ||| || | || ||||||||||||||||||||| | |||||||||
Sbjct 181 ATTCTAACA-AAATAAAAAG-ACAT-AAAATAGCGTCACACCTACTCTTTCTTCTTCTAC 237
Query 310 CTTTAGTATCTATCTCCTGTCTTCATACTCCTTTACACTCCTCTCCTTCTTCTTTACACC 369
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CTTTAGTATCTCCCTCCTGTCTTCATACTCCTTTACACTCCTCTCCTTCTTCTTTACACC 297
Query 370 TCTCCAATGGTAAAATCTCTCATTCACTAACTTTCTCTGCTTCTCTCTATCTTTCTCTGT 429
||||||||||| |||||| |||||||||| || | || |||| |
Sbjct 298 TCTCCAATGGTGGAATCTCCCATTCACTAA--------------CT-T-TC--TCTC--T 337
Query 430 GCATACCAACTCTAAAGTCTCTCATCAATGGCGGCTCGAAAACTAGGGTCGTTGTTACGT 489
||||||| | || |||| ||||||||||||||||||||||||| || ||||||||||||
Sbjct 338 GCATACCTATTCCAAAG--TCTCATCAATGGCGGCTCGAAAACTCGGTTCGTTGTTACGT 395
Query 490 CAATACTTTTTCTCTCTATGCTTCCTCTTCCTCGGTTGCTTCTTCTTCCCTAAAGA-CGC 548
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 396 CAATACTTTTTCTCTCTATGCTTCCTCTTCCTCGGTTGCTTCTTCTTCCCTAAA-ACCGC 454
Query 549 AGACTATAAACAAAAGA-GAAGAAAGAAGAAGCTTAGAAGAGTTTC-T--TCTTCTTCTG 604
|||| |||||||||||| |||| |||||||| ||||||| |||||| | ||||||||||
Sbjct 455 AGACCATAAACAAAAGAGGAAG-AAGAAGAAACTTAGAACAGTTTCTTCATCTTCTTCTG 513
Query 605 GTTCATCTCTATCCTCTTCTTGGACGTATTTAAAACGAGTTTTCTTATCCACGACAAGGA 664
||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 514 GTTCAGCTTTATCATCTTCTTGGACGTATTTAAAACGAGTTTTCTTATCCACGACAAGGA 573
Query 665 TATCCAAATCCCGTAACCAAACACATCCTAACGTTACTTTAACATCCGCAAGATCATCTC 724
|||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 574 TATCTAAATCCCGTAACCAAACACACCCTAACGCAACTTTAACATCCGCAAGATCATCTC 633
Query 725 AAAACTCCCTCGTCACTCTCGTCCAACCCGATACCACAAACCAACCCGACCCGGAAACAC 784
||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 634 AAAACTCACTCGTCACTCTCGTCCAACCCGATTCAACAAACCAACCCGACCCGGAAACCC 693
Query 785 GTATTCATCAGCAAACCGAATTCGAGATCTCCTCTTCCGACGAGATTTTCCCTTGTAACT 844
|||||| || ||||||||||||||||| |||| | | ||||||||||| ||||||||
Sbjct 694 ATATTCAACAACAAACCGAATTCGAGATTTCCT-GT--GGCGAGATTTTCCATTGTAACT 750
Query 845 CGTGTGGCGAGATTTTCCCAAAAATCAATCTCCTCGAGAATCACATCGCGATCAAACACG 904
||||||||||||||||||| | ||||||||||||||| || |||||||||||||||||||
Sbjct 751 CGTGTGGCGAGATTTTCCCCAGAATCAATCTCCTCGAAAACCACATCGCGATCAAACACG 810
Query 905 CCGTGTCGGAGCTAATCGCCGGAGAATCAAGCACGAACATCGTCAAGATCATATTCAAAT 964
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 811 CCGTATCGGAGCTAATCGCCGGCGAATCAAGCACGAACATCGTTAAAATCATATTCAAAT 870
Query 965 CTGGTTGGCCGGAGCAAGGTAATTACAAATCTCCGGTGATCAATCGAATCTTAAAAATCC 1024
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 871 CTGGTTGGCCGGAGCAAGGTAATCACAAATCTCCGGTGATCAATCGAATCTTAAAAATCC 930
Query 1025 ACAACAGTTC-AAAGATTCTCACCAGATTCGAAGAGTATCGTGAGTTCGTGAAAGCTAAA 1083
||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 931 ACAACAG-TCAAAAGATTCTCACCAGATTCGAAGAGTATCGTGAGTTCGTCAAAGCTAAA 989
Query 1084 GCCGCTCGTAGCAACGGCGGTGGAAGACGGTGGGACGATGAACGTTGCGTCGCCGACGGA 1143
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 990 GCCGCTCGTAGCAACGGCGGTGGAAGACGGTGGGACGATGAGCGTTGCGTCGCCGACGGG 1049
Query 1144 AACGAACTTTTACGATTTTACTGCTCGACGTTTATGTGTGATTTAGGGCAAAACGGTAAA 1203
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1050 AACGAGCTTTTACGATTTTACTGCTCGACGTTTATGTGTGATCTAGGGCAAAACGGTAAA 1109
Query 1204 TCAAATCTCTGTGGTCATCAGTATTGTAGTATCTGTGGTATCATCGGATCTGGATTCTCG 1263
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1110 TCAAATCTCTGTGGTCATCAGTATTGTAGCATCTGTGGGATCATCGGATCTGGATTCTCG 1169
Query 1264 CCGAAGCTCGACGGGATCGCGACGTTGGCGACGGGGTGGAGAGGACACGTGGCGGTTCCG 1323
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1170 CCGAAGCTCGACGGAATCGCGACGTTGGCGACGGGATGGAGAGGACACGTGGCGGTACCG 1229
Query 1324 GAGGAGGTTGAAGAAGAGTTTGGGTTTATGAATGTGAAACGGGCCATGTTGGTTTGTCGG 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 GAGGAGGTTGAAGAAGAGTTTGGGTTTATGAATGTGAAACGGGCCATGTTGGTTTGTCGG 1289
Query 1384 GTTGTAGCGGGTCGGGTCGGGTGTGATTTGATTGATGATGATGACGTGGATAAGAGTGAT 1443
|| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1290 GTCGTAGCGGGTCGGGTCGGGTGTGATTTGATGGATGATGATGACGTGGAAAAGAGTGAT 1349
Query 1444 GGTGGAGGGTATGATTCTCTGGTTGGGCAGAGTGGGAACAAGAGTGGGGCTCTGTTGAGG 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1350 GGTGGAGGGTATGATTCTCTGGTTGGGCAGAGTGGGAACAAGAGTGGGGCTCTTTTGAGG 1409
Query 1504 ATCGACGATGATGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTTCCttgttttgttatt 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 ATCGACGATGATGAGCTTTTGGTTTTTAATCCAAGGGCTGTGCTTCCTTGTTTTGTTATT 1469
Query 1564 gtgtatactgtgtaaccggatttgtgatcctgtgtgttttt-gtttatattttgttACAA 1622
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1470 GTGTATACTGTGTAACCGGTTTTGTGATCCTGTGTGTTTTTTGTTTATATTTTGTTACAA 1529
Query 1623 TTGTGAAGTGTGAAACGCTTTAGGTTTGTTTGGAAAA-TGGTAAAATCTTTGTGGTGAGT 1681
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1530 TTGTGAAGTGTGAAACGCTT-AGGTTTGTTTGGAAATGTGGTAAAATCTTTGTGGTGAGT 1588
Query 1682 ----A-ATGATCTAGGTACAGTTTGAGAGGTTATGTGACTAAAGAGTT-AAAGATAGT 1733
| |||||||||||||| |||||||||||||||||||||||| || |||||||||
Sbjct 1589 TTCCATATGATCTAGGTACATTTTGAGAGGTTATGTGACTAAAGA-TTGAAAGATAGT 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66734109240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5