BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29690.1
Length=2078
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481885 jgi|Araly1|481885|fgenesh2_kg.4__945__AT2G29690.1 3193 0.0
> Ahg481885 jgi|Araly1|481885|fgenesh2_kg.4__945__AT2G29690.1
Length=2078
Score = 3193 bits (1729), Expect = 0.0
Identities = 1973/2089 (94%), Gaps = 24/2089 (1%)
Strand=Plus/Plus
Query 1 AAGACTTAAAATCAACGAGCTCACGGGGATGTCGGCCGTTTCAATCTCCGCCGTCAAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGACTTAAAATCAACGAGCTCACGGGGATGTCGGCCGTTTCAATCTCCGCCGTCAAATC 60
Query 61 TGATTTTTTCACCGTCGAAGCCATAGCCGTTACACACCATCGGACGCCGCATCCACCACA 120
|||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct 61 TGATTTTTCCACCGTCGAGGCCATAGCCGTTACACACCATCGGACGCCG---CCGCCACA 117
Query 121 TTTCCCTTCGCTCCGGTTTCCACTATCGCTCAAGTCCCCGCCGGCTACTTCTCTTAACCT 180
||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 118 TTTTCCTTCGCTCCGGTTTCCACTATCGTTCAAGTCCCCGCCGGTTACTTCTCTTAACCT 177
Query 181 TG-TGGCTGGATCAAAACTCCTCCACTTCTCGCGTCGTCTTCCTTCTATCAAATG----- 234
|| | ||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 178 TGACAG-TGGATCAAAACTCCTCCACGTCT--CG-CGTCTTCCTTCTATCAAATGCTCAT 233
Query 235 ---C-TCATATACTCCGTCGTTAGATTTATCGGAGGAACAGTTCACAAAATTTAAAAAAG 290
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 234 CTTCTTCATATACTCCGTCGTTAGATTTATCGGAGGAACAGTTCACAAAATTTAAACAAG 293
Query 291 CATCGGAAAAGGGAAACTTAGTTCCTCTATTCCGATGTGTATTCTCGGATCATTTGACTC 350
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 294 CATCGGAAAAGGGAAACTTAGTTCCTCTATACCGATGTGTATTCTCGGATCATTTGACTC 353
Query 351 CGATACTTGCTTACCGATGTTTGGTGAAAGAAGATGATAGAGATGCTCCTAGCTTCTTGT 410
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 354 CGATACTTGCTTACCGATGTTTGGTGAAAGAAGACGATAGAGATGCTCCTAGCTTCTTGT 413
Query 411 TCGAGTCTGTGGAGCCTGGTTCGCAATCGTCCAACATCGGTAGGTATAGTGTAGTTGGAG 470
| ||||| ||||||||||||| |||||| ||||||||||| |||| ||||||||||||||
Sbjct 414 TTGAGTCAGTGGAGCCTGGTTTGCAATCCTCCAACATCGGGAGGTTTAGTGTAGTTGGAG 473
Query 471 CTCAGCCTACAATAGAAATCGTTGCAAAGGGAAATGTAGTTACTGTGATGGACCATGGAG 530
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 474 CTCAGCCCACAATAGAAATCGTGGCAAAGGGAAATGTAGTTACTGTGATGGACCATGGAG 533
Query 531 CTAGTCTTAGGACAGAGGAGGAAGTGGATGATCCAATGATGGTTCCTCAGAAAATCATGG 590
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 CTGGTCTTAGGACTGAGGAGGAAGTGGATGATCCAATGATGGTTCCTCAGAAAATCATGG 593
Query 591 AGGAATGGAATCCACAAGGCATTGATGAATTGCCTGAAGCTTTCTGCGGTGGTTGGGTTG 650
| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 ATGAATGGAAACCACAACGCATTGATGAATTGCCTGAAGCTTTCTGCGGTGGTTGGGTTG 653
Query 651 GATACTTTTCATATGACACTGTACGTTATGTTGAGAAGAAGAAGCTGCCTTTTTCTAATG 710
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 654 GATACTTCTCATATGACACTGTACGTTATGTTGAGAAGAAGAAGCTGCCATTTTCAAATG 713
Query 711 CTCCAGAGGATGATAGGAGTCTTCCTGATGTTAATTTGGGTCTTTATGATGATGTGATCG 770
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 714 CTCCAGAGGATGATAGGAGTCTTCCTGATGTTCATTTGGGTCTTTATGATGATGTGATCG 773
Query 771 TGTTTGATCATGTTGAGAAGAAAGCATATGTGATCCACTGGGTGCGGATAGATAAGGATC 830
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGTTTGATCATGTCGAGAAGAAAGCATATGTGATCCACTGGGTGCGGATAGATAAGGATC 833
Query 831 GTTCTGTTGAAGA-AAATTTCCGTGAAGGAATGAATCGGTTGGAATCTCTAACCTCTAGA 889
||||||||||||| || ||| | ||| |||||||||| ||||||||||||||||||||||
Sbjct 834 GTTCTGTTGAAGATAATTTTAC-TGATGGAATGAATCAGTTGGAATCTCTAACCTCTAGA 892
Query 890 ATTCAAGACCAAAAACCCCCCAAGATGCCTACTGGTTTCATAAAACTACGCACTCAGCTC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ATTCAAGACCAAAAACCCCCCAAGATGCCTACTGGTTTCATAAAACTACGCACTCAGCTC 952
Query 950 TTCGGTCCGAAATTGGAGAAATCAACTATGACGAGTGAGGCATACAAGGAGGCAGTGGTG 1009
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 953 TTCGGTCCTAAATTGGAGAAATCAACTATGACGAGTGAGGCGTACAAGGAGGCAGTGGTG 1012
Query 1010 GAAGCCAAAGAACATATCTTGGCTGGGGACATCTTTCAGATAGTTCTTAGTCAGAGATTT 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GAAGCCAAAGAACATATCTTGGCTGGGGACATCTTTCAGATAGTTCTTAGTCAGAGATTT 1072
Query 1070 GAAAGGCGGACATTTGCGGACCCATTTGAGATATATAGAGCTCTTAGGATTGTAAATCCA 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1073 GAAAGGCGGACATTTGCGGACCCATTTGAGATATATAGAGCTCTTAGGATTGTAAATCCA 1132
Query 1130 AGTCCCTACATGGCCTATTTGCAGGTTAGAGGATGCATATTAGTTGCATCAAGTCCAGAG 1189
||||| |||||||||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct 1133 AGTCCGTACATGGCCTATTTACAGGCTAGAGGATGCATATTAGTTGCTTCAAGTCCAGAA 1192
Query 1190 ATATTGTTACGTTCAAAAAATAGGAAAATTACCAATCGCCCCCTTGCTGGAACTGTCAGA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 ATATTGTTACGTTCAAAAAATAGGAAAATTACCAATCGCCCCCTTGCTGGAACTGTCAGA 1252
Query 1250 AGAGGGAAGACACCCAAAGAAGATCTAATGCTGGAAAAAGAGCTCTTAAGCGATGAAAAA 1309
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1253 AGAGGAAAGACACCCAAAGAAGATCTAATGCTGGAAAAAGAGCTCTTAAGTGATGAAAAA 1312
Query 1310 CAATGCGCAGAACATATTATGCTTGTTGATTTGGGAAGGAACGATGTTGGCAAGGTTTCA 1369
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CAATGCGCAGAGCATATTATGCTTGTTGATTTGGGAAGGAACGATGTTGGCAAGGTTTCA 1372
Query 1370 AAGCCTGGTTCTGTGGAGGTCAAGAAGCTCAAGGATATAGAATGGTTTTCACATGTCATG 1429
||||| |||||||||||||| ||||||||| | |||||||| ||| |||||||||||||
Sbjct 1373 AAGCCCGGTTCTGTGGAGGTTGAGAAGCTCATGAATATAGAACGGTATTCACATGTCATG 1432
Query 1430 CACATTAGCTCCACGGT-AGTAGGTGAATTGCTCGATCATCTAACAAGCTGGGACGCTCT 1488
||||||||||||||||| | ||| ||||| || ||| ||||||||||||||||||||||
Sbjct 1433 CACATTAGCTCCACGGTGAC-AGGCGAATTACTAGATAATCTAACAAGCTGGGACGCTCT 1491
Query 1489 TAGAGCTGTACTTCCCGTTGGAACCGTGAGCGGAGCCCCAAAGGTAAAAGCCATGGAGCT 1548
| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1492 TCGAGCTGCACTTCCCGTTGGAACCGTCAGCGGAGCCCCAAAGGTAAAAGCCATGGAGCT 1551
Query 1549 GATAGATGAACTTGAAGTAACAAGGCGTGGTCCTTACAGTGGAGGCTTTGGAGGCATTTC 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GATAGATGAACTTGAAGTAACAAGGCGTGGTCCTTACAGTGGAGGCTTTGGAGGCATTTC 1611
Query 1609 GTTTAATGGAGACATGGACATTGCCTTAGCTCTCAGAACAATGGTCTTCCCAACAAATAC 1668
||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1612 CTTTAACGGAGACATGGACATTGCCTTGGCTCTTAGAACAATGGTCTTCCCAACAAATAC 1671
Query 1669 CCGTTATGACACATTGTACTCATACAAGCATCCTCAGAGACGTAGAGAATGGATTGCTCA 1728
||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||
Sbjct 1672 CCGTTATGACACATTGTACTCTTACAAGCATCCTCAGAGACGTCGAGAGTGGATTGCTCA 1731
Query 1729 TATTCAAGCTGGAGCTGGGATTGTTGCAGACAGTAACCCTGATGATGAACATAGAGAGTG 1788
|||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1732 TATTCAGGCTGGAGCTGGGGTTGTTGCAGACAGTAACCCTGATGATGAACACAGAGAGTG 1791
Query 1789 TGAGAACAAAGCAGCGGCTTTAGCCCGAGCCATCGATCTTGCTGAGTCCTCCTTTCTTGA 1848
||||||||||||||| ||| ||||||||||||| |||||||| |||||||||||||| ||
Sbjct 1792 TGAGAACAAAGCAGCAGCTCTAGCCCGAGCCATTGATCTTGCAGAGTCCTCCTTTCTCGA 1851
Query 1849 GGCACCTGAGTTTACTACTATCACACCTCACATCAACAATATCTGAGCATAAGCATTCTT 1908
| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1852 GATACCTGAGGTTACTACTATCACACCTCACATCAACAATATCTGAGCATAAGCTTTCTT 1911
Query 1909 -TATTTCTTTACTTTTGCTTTCAGCATTACTCACTCCACATAGCTGTTTGATTTGCGAGA 1967
| |||||||||||||| || ||| ||||||||||| | |||||||||||||||||||||
Sbjct 1912 GT-TTTCTTTACTTTTGGTTCCAGTATTACTCACTC-AGATAGCTGTTTGATTTGCGAGA 1969
Query 1968 TTGGCTCTTTTAAGTTTTAGAATTTAGGACTTCTGTCCGAGGTTTGAGGTCTGTCGGACC 2027
|||||||||| ||| |||||||||||||||| |||||||| ||| |||||||| |||||
Sbjct 1970 ATGGCTCTTTTGAGTATTAGAATTTAGGACTTGTGTCCGAGATTTAAGGTCTGTGGGACC 2029
Query 2028 AAAATTTGGTAGCAAATATTTACAAATAATATCATATGATCGATCATAC 2076
|||| ||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 2030 AAAAGTTGCTAGCAAATATTTACAAATAATGTCATATGATCGATCATAC 2078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78161182740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5