BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29700.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481886 jgi|Araly1|481886|fgenesh2_kg.4__946__AT2G29700.1 1009 0.0
> Ahg481886 jgi|Araly1|481886|fgenesh2_kg.4__946__AT2G29700.1
Length=707
Score = 1009 bits (546), Expect = 0.0
Identities = 609/637 (96%), Gaps = 13/637 (2%)
Strand=Plus/Plus
Query 111 AGACGAACAAGTCGTGGTGAGATTTTAGGAAGACGAAGAAGATGGAGAGTATCTGGCGAA 170
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 76 AGACGAACAAGTCGTGGTGAGATTTTAGGAAGAC---GAAGATGGAGAGTATCTGGCGAA 132
Query 171 TCGCGACGGGACAAGATCCGAGCCGTGAAGATTACGAAGGGATCGAGTTCTGGTCAAACC 230
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 133 TCGCGACGGGCCAAGATCCGAACCGTGAAGATTACGAAGGGATCGAGTTCTGGTCAAACC 192
Query 231 CTGAGCGTTCTGGTTGGCTCACAAAGCAAGGCGATTACATCAAAACCTGGCGTCGTCGTT 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 193 CTGAGCGTTCTGGTTGGCTCACAAAGCAAGGCGATTACATCAAAACCTGGCGTCGTCGTT 252
Query 291 GGTTCGTTCTCAAACGAGGGAAGCTTCTCTGGTTCAAAGATCAAGCCGCTGCTGGAATTC 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 253 GGTTCGTTCTCAAACGAGGGAAGCTTCTCTGGTTCAAAGATCAAGCCGCTGCTGGAATTC 312
Query 351 GTGGATCTACGCCGCGTGGTGTGATCTCCGTTGGTGATTGTCTCACCGTGAAAGGAGCTG 410
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 GTGGATCTACACCGCGTGGTGTGATCTCCGTTGGTGATTGTCTCACCGTGAAAGGAGCTG 372
Query 411 AGGATGTTGTGAATAAGCCTTTTGCTTTTGAGCTATCTAGTGGTAGCTATACCATGTTCT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 AGGATGTTGTGAATAAGCCTTTTGCTTTTGAGCTATCTAGTGGTAGCTATACCATGTTCT 432
Query 471 TCATTGCTGATAATGAGAAGGAGAAAGAAGAGTGGATTAATTCGATTGGAAGATCGATTG 530
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 433 TCATTGCTGATAACGAGAAGGAGAAAGAAGAGTGGATTAATTCGATTGGAAGGTCGATTG 492
Query 531 TGCAACACTCGAGGTCTGTGACGGATTCTGAGGTTCTCGATTATGATCACAGGCGGTGAT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TGCAACACTCGAGGTCTGTGACGGATTCTGAGGTTCTCGATTATGATCACAGGCGGTGAT 552
Query 591 TACTAT--C-AT-T-A-TGTATGATTTTGTTGGCCTTAGGGTTTT--CGTGGAATGTAAC 642
|| ||| | || | | ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 553 TATTATTACTATCTTAATGTGTGATTTTGTTGGCCTTAGGGTTTTTTCGTGGAATGTAAC 612
Query 643 ACTCTCTTGTCTTTTAAGTTATGATGTTATTGTACCGTGATCGTGATGTATCTAATGCCT 702
|||||||| ||||| || |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 613 ACTCTCTTCTCTTTGAAATTATGATGTTATTGTACCTTGATCGTGATGTATCTAACGCCT 672
Query 703 CAAGTTTCAAAAATTGATTCTCTCTTTGTTATGATTT 739
|||||||||| | |||||||||||||| |||||||
Sbjct 673 AAAGTTTCAAA--TCGATTCTCTCTTTGTCATGATTT 707
Score = 122 bits (66), Expect = 3e-27
Identities = 80/86 (93%), Gaps = 4/86 (5%)
Strand=Plus/Plus
Query 2 GAGCGACCAAAACGCAGAGTTTTGACAGCAATTGAGTGGATACCGAATCACA-A-TAATA 59
|||||| |||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 1 GAGCGAGCAAAACGCAGCGTTTTGACAGCAATTGAGTGGATACCGAATCACACAATAATA 60
Query 60 CAGAAAGACATTAAAAG-C-AACAAG 83
||||||||||||||||| | ||||||
Sbjct 61 CAGAAAGACATTAAAAGACGAACAAG 86
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5