BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29720.1
Length=1527
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481889 jgi|Araly1|481889|fgenesh2_kg.4__949__AT2G29720.1 2130 0.0
Ahg482529 jgi|Araly1|482529|fgenesh2_kg.4__1589__AT2G35660.1 1644 0.0
> Ahg481889 jgi|Araly1|481889|fgenesh2_kg.4__949__AT2G29720.1
Length=1515
Score = 2130 bits (1153), Expect = 0.0
Identities = 1402/1519 (92%), Gaps = 30/1519 (2%)
Strand=Plus/Plus
Query 35 TCCTCTTGGAACGCGGCTATGTCTCTTGTGCGTCCGATCTA-----TCC--T--TTCTTG 85
||| |||| |||| ||||||||||||||||||||||||||| ||| | ||||||
Sbjct 1 TCCACTTGTAACGTGGCTATGTCTCTTGTGCGTCCGATCTATCCTCTCCAATCCTTCTTG 60
Query 86 GCCAGAAGCAAGAGATGGTTTCCGGTTCGAACCGGATTAAAATCGGTTTGCTTAACAA-- 143
|||||||||||||||||||||||||||||||| ||| |||| ||||||| ||| |||
Sbjct 61 GCCAGAAGCAAGAGATGGTTTCCGGTTCGAACAGGAACAAAACCGGTTTGTTTAGCAATG 120
Query 144 CG-ACCAGAGCCGAAACAAGCGGTGTTGACAGAGAGGAGAAAGTAGTGATTGTTGGGGGC 202
| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||
Sbjct 121 AGTACCAGAGCCGAAACAAGCGGTGCTGACCGAGAGGAGAAAGTAGTGATTGTTGGCGGC 180
Query 203 GGGATTGGCGGACTTGCCACTGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTG 262
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGGATTGGCGGACTTGCCACCGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTG 240
Query 263 TTGGAGCAGGCAGAGTCGCTTCGGACAGGAGGAGCATCGCTGACGCTATCCAAGAATGGG 322
|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||
Sbjct 241 TTGGAGCAGGCAGAGTCGCTTCGGACCGGAGGAACATCTCTGACGCTATCCAAGAATGGG 300
Query 323 TGGCGTGTTCTTGACGCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATG 382
|||||||||||||||| ||||||| | ||||||||||||||||| ||||||||||||||
Sbjct 301 TGGCGTGTTCTTGACGACATCTCCGTTGGACCTCAACTCCGAAAACAGTTTCTTGAAATC 360
Query 383 CAAGGGGTGGTATTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGAC 442
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 361 CAAGGGGTGGTAGTGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCCAATTTAAAGAC 420
Query 443 AATGATCAAAGCCAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCA 502
||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||||
Sbjct 421 AATGATCAAAGCCAAGAAGTTCGGGCGGTGGAGAGACGAGTACTCTTGAAAACACTTGCA 480
Query 503 AGCCAGCTTCCTCCACAGACCATTCGGTTTTCTTCAAAACTGGAAAGTATACAAAGCAAT 562
|||||||||||||| || |||||||||||||| |||||||| ||||||||||||||||||
Sbjct 481 AGCCAGCTTCCTCCGCAAACCATTCGGTTTTCCTCAAAACTAGAAAGTATACAAAGCAAT 540
Query 563 GCCAATGGTGACACTCTCCTTCAACTTAAAGATGGAACTCGGTTTCTTGCAAATATTGTT 622
| ||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||
Sbjct 541 GTCAATGGTGACACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTT 600
Query 623 ATAGGTTGTGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATAGGTTGTGATGGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAA 660
Query 683 TATGTTGGTTATTGCGCTTTCCGTGGCCTTGGGTTCTTTCCAAATGGACAGCCATTTCAG 742
|| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 TACGTTGGTTATTCCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGACAGCCATTTCAG 720
Query 743 CAAAAGGTGAACTACATATTCGGTAGAGGGCTTCGAGCTGGATATGTACCTGTATCTGCA 802
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 721 CAAAAGGTGAACTACATATTCGGTAGAGGGCTTCGAGCTGCATATGTACCTGTATCTACA 780
Query 803 ACAAAAGTCTACTGGTTCATCACTTTCAACAGCCCTTCTCTAGGGCCTCAAA-TGATGGA 861
||||||||||||||||||||| |||||||||||| |||||||| || |||| | | ||
Sbjct 781 ACAAAAGTCTACTGGTTCATCTGTTTCAACAGCCCATCTCTAGGTCC-CAAAATTACAGA 839
Query 862 TCCAGCTATCCTAAGAAAAGAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCA 921
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCCAGCTATCCTAAGAAAACAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCA 899
Query 922 AAACCTCATTGATCTAACACCTGATGAAGCAATCAGTAGA-ACTCCTCTTGCGGACCGGT 980
||||||||| ||||||||||||||||| |||||||| ||| | |||||||| |||||||
Sbjct 900 AAACCTCATCGATCTAACACCTGATGATGCAATCAGCAGAGA-TCCTCTTGTAGACCGGT 958
Query 981 GGCTTTGGCCTGGCATTGCTCCTTC-AGCATCAAAAGGTAGGGTTGTTCTTGTTGGAGAT 1039
|| |||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||
Sbjct 959 GGGTTTGGCCTGGCATTGCTCCT-CGAGCATCAAAAGGTCGGGTTGTTCTTGTTGGAGAT 1017
Query 1040 GCTTGGCACCCAATGACTCCAAATCTTGGACAAGGTGCTTGCTGTGCCTTGGAAGATTCA 1099
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1018 GCTTGGCACCCAATGACTCCAAATCTTGGACAAGGTGCTTGTTGTGCCTTGGAAGATTCA 1077
Query 1100 GTTCTTCTGGCAAATAAACTTGCCAGTGCAATAAATGGAGGGACCGAATCAGTTGAAGGG 1159
||| ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||
Sbjct 1078 GTTGTTCTGGCAAATAAACTTGCCACTGCAATGAATGGAGGGACCGAATCAATTGAAGGG 1137
Query 1160 GCGATGGAATCATATAGGAGTGAGAGATGGTCTCAGGTATTCCGGTTGACAGTACTTGCA 1219
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 GCAATGGAATCATATGGGAGTGAGAGATGGTCTCAGGTATTCCGGTTGACAGTACTTGCA 1197
Query 1220 AACCTAGTCGGAAAACTTCTGCAATCAGACAATCCTCTTGTGTGTTCCGTTAGAGACAAT 1279
|||||||| |||||||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 1198 AACCTAGTTGGAAAACTTCTGCAGTCGGACAATCCTCTTGTGTGTTCCATTAGAGACAAT 1257
Query 1280 ATTGTCAGTGCAATGGGAAAATCCTCTCGGACCAACGATGGAACACACAAACTTTGAGTG 1339
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1258 ATTGTCAGTGCAATGGGACAATCCTCTCGGACCAATTCTGGAACACACAAACTTTGAGTG 1317
Query 1340 TGAGCCTCTCTATGTTTCAATA---T----TGTCTATGTAATGAGATGTAAAAGCATATG 1392
|||||||||||||||||||| | | |||||||||| |||||| ||||||||| ||
Sbjct 1318 TGAGCCTCTCTATGTTTCAAAAAGCTGAACTGTCTATGTAGTGAGATCTAAAAGCATTTG 1377
Query 1393 CTCCATTGGATAGAGGACTTAGA-CAATGTATCATCAGAGGAATAATATCAAAGAAGATA 1451
|||||| |||| ||||||| || |||||||| |||||||||| ||| ||||||||||||
Sbjct 1378 TTCCATTAGATATAGGACTT-GAACAATGTATAATCAGAGGAACAATCTCAAAGAAGATA 1436
Query 1452 ATATAAACTCTG--A-TTGAATGTAAAAGAATAATACAATGTAATTCGTTTATGCTATGA 1508
||| |||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1437 ATAAAAACTCTGTGAATTGAATGTAAAAGAATAAGACAATGTAATTCGTTTATGCTATGA 1496
Query 1509 AAGGGAATGACTCTAGAGC 1527
|||||| | |||||||||
Sbjct 1497 GAGGGAAGGCCTCTAGAGC 1515
> Ahg482529 jgi|Araly1|482529|fgenesh2_kg.4__1589__AT2G35660.1
Length=1423
Score = 1644 bits (890), Expect = 0.0
Identities = 1188/1329 (89%), Gaps = 31/1329 (2%)
Strand=Plus/Plus
Query 49 GGCTATGTCTC-TTGTGCGTCCGATCTATCCT-T----T-CTT-GGCCAGAAGCAAGAGA 100
||| ||||| | || ||| ||||||||||||| | | ||| ||||| |||||| |||
Sbjct 11 GGCCATGTC-CGTTCTGCTTCCGATCTATCCTCTCCAATCCTTAGGCCA-AAGCAACAGA 68
Query 101 TGGTTTCCGGTTCGAACCGGATTAAAATCGGTTTGCTTAACAAC-GACCAGA-GC-CGAA 157
||||| |||||||||||| ||| |||| |||| || ||| | || ||||| | || | ||
Sbjct 69 TGGTTCCCGGTTCGAACCAGATCAAAACCGGTGTGTTTAGC-ACTGACCA-ATGCTC-AA 125
Query 158 ACAAGCGGTGTTGA-CAGAGAGGAGAAAGTAGTGATTGTTGGGGGCGGGATTGGCGGACT 216
|||| ||||| ||| || ||||||||| |||||||||||||| | |||||||||||||||
Sbjct 126 ACAAACGGTGGTGACCA-AGAGGAGAATGTAGTGATTGTTGGCGCCGGGATTGGCGGACT 184
Query 217 TGCCACTGCCGTTGCTCTTCACCGGCTTGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGA 276
| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 185 TACCACCGCCGTTTCTCTTCACCGGCTAGGAATCCGGTCGGTGGTGTTGGAGCAGGCAGA 244
Query 277 GTCGCTTCGGACAGGAGGAGCATCGCTGACGCTATCCAAGAATGGGTGGCGTGTTCTTGA 336
|||||||||||| |||||| |||||||||| |||| ||||||||||||||| ||||||||
Sbjct 245 GTCGCTTCGGACCGGAGGAACATCGCTGACCCTATTCAAGAATGGGTGGCGCGTTCTTGA 304
Query 337 CGCCATCTCCATCGGACCTCAACTCCGAAAGCAGTTTCTTGAAATGC-AAGGGGTGGTAT 395
||||||||| |||| |||||||||||| ||||||||||||||| | ||||| |||||
Sbjct 305 TGCCATCTCCGTCGGGCCTCAACTCCGACCGCAGTTTCTTGAAAT-CGAAGGGATGGTAG 363
Query 396 TGAAGAAGGAAGATGGAAGAGAGCTTCGTTCTTTCAAATTTAAAGAC-AATGATCAAAGC 454
|||||||||||||||||||||||||||| ||||||||||| |||||| || |||||||||
Sbjct 364 TGAAGAAGGAAGATGGAAGAGAGCTTCGCTCTTTCAAATTCAAAGACGAA-GATCAAAGC 422
Query 455 CAAGAAGTTCGGGGGGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTTCCT 514
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CAAGAAGTTCGGGCCGTGGAGAGGCGAGTACTCTTGGAAACACTTGCAAGCCAGCTTCCT 482
Query 515 CCACAGACCATTCGGTTTTCTTCAAAACTGGAAAGTATACAAAGCAATGCCAATGGTGAC 574
||| | ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 483 CCAGAAACCATTCGGTTCTCCTCAAAACTGGAAAGTATACAAAGCAATGCCAATGGTGAC 542
Query 575 ACTCTCCTTCAACTTAAAGATGGAACTCGGTTTCTTGCAAATATTGTTATAGGTTGTGAT 634
||||||||||||||| ||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct 543 ACTCTCCTTCAACTTGGAGATGGAACCCGGTTGCTTGCAAAGATTGTTATTGGTTGTGAT 602
Query 635 GGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGGTTAT 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 603 GGTATCCGGTCTAAGGTTGCAACTTGGATGGGGTTCAGTGAGCCGAAATATGTTGGTCAT 662
Query 695 TGCGCTTTCCGTGGCCTTGGGTTCTTTCCAAATGGACAGCCATTTCAGCAA-AAGGTGAA 753
||||||||||||||||| ||||||||||||||||| |||||||||||| || ||||||||
Sbjct 663 TGCGCTTTCCGTGGCCTCGGGTTCTTTCCAAATGGGCAGCCATTTCAG-AACAAGGTGAA 721
Query 754 CTACATATTCGGTAGAGGGCTTCGAGCTGGATATGTACCTGTATCTGCAACAAAAGTCTA 813
|||||||| ||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 CTACATATACGGGAAAGGGCTTAGAGCTGGATATGTACCTGTATCTGCAACAAAAGTCTA 781
Query 814 CTGGTTCATCACTTTCAACAGCCCTTCTCTAGGGCCTC-AAATGATGGATCCAGCTATCC 872
|||||||||| ||||||||| || || |||||||| | |||| | ||||||||||||||
Sbjct 782 CTGGTTCATCTGTTTCAACAGGCCATCACTAGGGCC-CAAAATTACGGATCCAGCTATCC 840
Query 873 TAAGAAAAGAAGCCAAGGAACTGGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCATTG 932
||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 841 TAAAAAAACAAGCCAAAGAACTTGTTAGTACCTGGCCAGAAGATCTGCAAAACCTCATCG 900
Query 933 ATCTAACACCTGATGAAGCAATCAGTAGAACTCCTCTTGCGGACCGGTGGCTTTGGCCTG 992
||||||||||||||||| | ||||| ||||||||||||| ||||||||||||||||| |
Sbjct 901 ATCTAACACCTGATGAAACCATCAGCAGAACTCCTCTTGTAGACCGGTGGCTTTGGCCAG 960
Query 993 GCATTGCTCCTTCAGCATCAAAAGGTAGGGTTGTTCTTGTTGGAGATGCTTGGCACCCAA 1052
||||||||||| ||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct 961 GCATTGCTCCTCCAGCATCAAAAGGCCGAGTGGTTCTTGTTGGAGATGCTTGGCACCCAA 1020
Query 1053 TGACTCCAAATCTTGGACAAGGTGCTTGCTGTGCCTTGGAAGATTCAGTTCTTCTGGCAA 1112
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 1021 TGACTCCAAATCTTGGACAAGGTGCTTGCTGTGCCTTGGAAGATTCAGTTGTTCTGGCCA 1080
Query 1113 ATAAACTTGCCAGTGCAATAAATGGAGGGACCGAATCAGTTGAAGGGGCGATGGAATCAT 1172
|||||||||||| ||||||||||||||| ||||||||| |||||| ||| ||||||||||
Sbjct 1081 ATAAACTTGCCAATGCAATAAATGGAGGAACCGAATCAATTGAAGAGGCAATGGAATCAT 1140
Query 1173 ATAGGAGTGAGAGATGGTCTCAGGTATTCCGGTTGACAGTACTTGCAAACCTAGTCGGAA 1232
| |||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct 1141 ACGGGAGTGAGAGATGGTCTCGGGCATTCCCGTTGACAGTACGTGCAAACCTAGTCGGAG 1200
Query 1233 AACTTCTGCAATCAGACAATCCTCTTGTGTGTTCCGTTAGAGACAATATTGTCAGTGC-A 1291
||||||||||| || |||||||| ||||||||| | ||| |||||||||||| | | |
Sbjct 1201 CACTTCTGCAATGGGAGAATCCTCTAGTGTGTTCCATAAGAAACAATATTGTCA-TACCA 1259
Query 1292 ATGGGAAA-ATCCTCTCGGACCAACGATGGAACACACAAACTTTGAGTGTGAGCCTCTCT 1350
| | | | ||| ||||||| | ||||||||||||||||||||||||| |||||||
Sbjct 1260 AAGTTACTGAGACTC--GGACCAATGCTGGAACACACAAACTTTGAGTGTGAACCTCTCT 1317
Query 1351 ATGTTTCAA 1359
||||||||
Sbjct 1318 CTGTTTCAA 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57173457745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5