BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29740.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481893 jgi|Araly1|481893|fgenesh2_kg.4__953__AT2G29740.1 2202 0.0
Ahg933461 jgi|Araly1|933461|scaffold_401449.1 1467 0.0
> Ahg481893 jgi|Araly1|481893|fgenesh2_kg.4__953__AT2G29740.1
Length=1616
Score = 2202 bits (1192), Expect = 0.0
Identities = 1375/1464 (94%), Gaps = 10/1464 (1%)
Strand=Plus/Plus
Query 22 aaaaaTCGCCGGAAGAATGGCGAAGCAGCAAGAAGCAGAGCTCATCTTCATCCCATTTCC 81
|||||||||| ||||||||| | || ||||||||||||||||||| ||||||||||||||
Sbjct 1 AAAAATCGCCAGAAGAATGGAGGAGAAGCAAGAAGCAGAGCTCATATTCATCCCATTTCC 60
Query 82 AATCCCCGGACACATTCTCGCCACAATCGAACTCGCGAAACGTCTCATCAGTCACCAACC 141
|||||| |||||||| || ||||||||||||||||||||||||||||||| |||| ||||
Sbjct 61 AATCCCTGGACACATGCTTGCCACAATCGAACTCGCGAAACGTCTCATCAATCACAAACC 120
Query 142 TAGTCGGATCCACACCATCACCATCCTCCATTGGAGCTTACCTTTTCTTCCTCAATCTGA 201
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCGTCGGATCCATACCATCACCATCCTCCATTGGAGCTTACCTTTTCTTCCTCAATCTGA 180
Query 202 CACTATCGCCTTCCTCAAATCCCTAATCGAAACAGAGTCTCGTATCCGTCTCATTACCTT 261
||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 181 CACTATCTCCTTCCTCAAATCCCTAATCCAAACAGAGTCTCGTATCCGTCTTGTTACCTT 240
Query 262 ACCCGATGTCCAAAACCCTCCACCAATGGAGCTATTT-GTGAAAGCTTCCGAATCTTACA 320
|||||| |||| |||||||||||||||||| || ||| ||||||||||| ||||||||||
Sbjct 241 ACCCGACGTCCCAAACCCTCCACCAATGGAACT-TTTCGTGAAAGCTTCAGAATCTTACA 299
Query 321 TTCTTGAATACGTCAAGAAAATGGTTCCTTTGGTCAGAAACGCTCTCTCCACTCTCTTGT 380
||||||||| |||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 300 TTCTTGAATTCGTCAAGAAAATGGTTCCTTTGGTTAAAAAAGCTCTCTCCACTCTCTTGT 359
Query 381 CTTCTCGTGATGAATCGGATTCAGTTCATGTCGCCGGATTAGTTCTTGATTTCTTCTGTG 440
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 360 CTTCTCGTGATGAATCGGATTCAGTTCGTGTCGCCGGATTAGTTCTCGATTTCTTCTGTG 419
Query 441 TCCCTTTGATCGATGTCGGAAACGAGTTTAATCTCCCTTCTTACATCTTCTTGACGTGTA 500
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 TCCCTTTGATTGATGTTGGAAACGAGTTTAATCTCCCTTCTTACATTTTCTTGACGTGTA 479
Query 501 GCGCAAGTTTCTTGGGTATGATGAAGTATCTTCTGGAGAGAAACCGCGAAACCAAACCGG 560
||||||||||||||||||||||||||||||| | |||||| ||||| ||| ||||||||
Sbjct 480 GCGCAAGTTTCTTGGGTATGATGAAGTATCTCCCAGAGAGACACCGCAAAATCAAACCGG 539
Query 561 AACTTAACCGGAGCTCTGACGAGGAAACAATATCAGTTCCTGGTTTTGTTAACTCCGTTC 620
|| ||||||||||||||| ||||||||||||| | |||||||| ||||||||||||||||
Sbjct 540 AATTTAACCGGAGCTCTGGCGAGGAAACAATACCGGTTCCTGGCTTTGTTAACTCCGTTC 599
Query 621 CGGTTAAAGTTTTGCCACCGGGTTTGTTCACGACTGAGTCTTACGAAGCTTGGGTCGAAA 680
||||||| ||||||||||||||| |||||| || |||||||||||||||||||||||||
Sbjct 600 CGGTTAAGGTTTTGCCACCGGGTCTGTTCATGAGAGAGTCTTACGAAGCTTGGGTCGAAA 659
Query 681 TGGCGGAAAGGTTCCCTGAAGCCAAGGGTATTTTGGTCAATTCATTT-GAATCTCTAGAA 739
||||||| ||||||||||||||||||||||| ||||| ||||| ||| ||||||||||||
Sbjct 660 TGGCGGAGAGGTTCCCTGAAGCCAAGGGTATCTTGGTAAATTC-TTTCGAATCTCTAGAA 718
Query 740 CGTAACGCTTTTGATTATTTCGATCGTCGTCCGGATAATTACCCACCCGTTTACCCAATC 799
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 CGTAACGCTTTTGATTATTTCGATCATCGTCCGGATAATTACCCACCCGTTTACCCAATC 778
Query 800 GGGCCAATTCTATGCTCCAACGATCGTCCGAATTTGGATTTATCGGAACGAGACCGGATC 859
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 779 GGGCCGATTCTATGCTCCAACGATCGTCCGAATTTGGATTTATCGGAACAAGATCGGATC 838
Query 860 TTGAAATGGCTCGATGACCAACCCGAGTCATCTGTTGTGTTTC-TCTGCTTCGGGAGCTT 918
|||| ||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 839 TTGAGATGGCTCGATGACCAACCCGAGTCATCAGTTGTG-TTCTTCTGCTTCGGGAGCTT 897
Query 919 GAAGAGTCTCGCTGCGTCTCAGATTAAAGAGATCGCTCAAGCC-TTAGAGCTCGTCGGAA 977
||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct 898 GAAGAGTCTCGCTGCTTCTCAGATTAAAGAGATCGCTCAAGCCATT-GAGCTCGTCGGAT 956
Query 978 TCAGATTCCTCTGGTCGATTCGAACGGACCCGAAGGAGTACGCGAGCCCGAACGAGATTT 1037
||||||||||||||||||||||||| || ||||| |||||| ||| |||| |||||||||
Sbjct 957 TCAGATTCCTCTGGTCGATTCGAACAGATCCGAACGAGTACCCGAACCCGTACGAGATTT 1016
Query 1038 TACCGGACGGGTTTATGAACCGAGTCATGGGTTTGGGCCTTGTTTGTGGTTGGGCTCCTC 1097
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1017 TACCGGACGGGTTTATGAACCGGGTCATGGGTTTAGGTCTTGTTTGTGGTTGGGCTCCTC 1076
Query 1098 AAGTTGAAATTCTGGCCCATAAAGCAATTGGAGGGTTCGTGTCACACTGCGGTTGGAACT 1157
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1077 AAGTGGAAATTCTGGCCCATAAAGCAATCGGAGGGTTCGTGTCACACTGCGGTTGGAACT 1136
Query 1158 CGATATTGGAGAGTTTGCGTTTCGGAGTTCCAATTGCCACGTGGCCAATGTACGCGGAAC 1217
|||| |||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 1137 CGATTTTGGAGAGTTTGCGTTTCGGGGTTCCAATCGCCACGTGGCCAATGTACGCAGAAC 1196
Query 1218 AACAACTAAACGCGTTCACGATTGTGAAGGAGCTTGGTTTGGCGTTGGAGATGCGGTTGG 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 AACAACTAAACGCGTTCACGATTGTGAAGGAGCTTGGTTTGGCGTTGGAGATGCGGTTGG 1256
Query 1278 ATTACGTGTCGGAAT-ATGGAGAAATCGTGAAAGCTGATGAAATCGCAGGAGCCGTACGA 1336
||||||||| || | |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1257 ATTACGTGTGGGC-TCATGGAGAAATCGTGAAAGCTGATGAAATCGCAGGTGCCGTACGA 1315
Query 1337 TCTTTGATGGACGGTGAGGATGTGCCGAGGAGGAAACTGAAGGAGATTGCGGAGGCGGGA 1396
||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1316 TCTTTAATGGACGGTGAGGATGTGCGGAGGAGGAAACTGAAGGAGATTGCGGAGGCGGCA 1375
Query 1397 AAAGAGGCTGTGATGGACGGTGGATCTTCGTTTGTTGCGGTTAAAAGATTCATAGATGGG 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 AAAGAGGCTGTGATGGACGGTGGATCTTCGTTTGTTGCGGTTAAAAGATTCATAGATGGG 1435
Query 1457 CTTTGATCGGTGATGGGTTTTAAA 1480
|||||| ||||||||| |||||||
Sbjct 1436 CTTTGACCGGTGATGGTTTTTAAA 1459
Score = 63.9 bits (34), Expect = 4e-09
Identities = 43/47 (91%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 1607 TGTTTACTCATTTGTTATATATCTAAATAGCTCATTTTGCATTTTGT 1653
|||| ||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1570 TGTTCACTCATTTG-T-TGTATCTAAATAGCTCATTTTGCATTTTGT 1614
> Ahg933461 jgi|Araly1|933461|scaffold_401449.1
Length=1489
Score = 1467 bits (794), Expect = 0.0
Identities = 1224/1430 (86%), Gaps = 36/1430 (3%)
Strand=Plus/Plus
Query 38 ATGGCGAAGC-AGCAAGAAGCAGAGCTCATCTTCATCCCATTT-CCAATCCCCGGACACA 95
|||| || || || |||||||||||||| || ||||||| ||| || || |||| ||||
Sbjct 21 ATGGGGATGCAAG-AAGAAGCAGAGCTCGTCATCATCCC-TTTCCCCTTCTCCGGGCACA 78
Query 96 TTCTCGCCACAATCGAACTCGCGAAACGTCTCATCAGTC-A-CCAACCTAGTCGGATCCA 153
||||||| || ||||||||||||||||||||||| |||| | ||| | |||||||||
Sbjct 79 TTCTCGCAACCATCGAACTCGCGAAACGTCTCATAAGTCAAGACAA--TCCTCGGATCCA 136
Query 154 CACCATCACCATCCTCCATTGGAG-CTTACCTTTTCTTCCTCAATCTGACACTATCGCCT 212
|||||||||||||||| ||||| | | |||| ||| |||||||| ||||||| ||||| |
Sbjct 137 CACCATCACCATCCTCTATTGGGGAC-TACCCTTTATTCCTCAAGCTGACACAATCGCTT 195
Query 213 TCCTCAAATCCCTAATCGAAACA-GAGTCTCGTATCCGTCTCATTACCTTACCCGATGTC 271
||||| |||||||| || ||| | |||||||||||||||||| |||| || ||||| |||
Sbjct 196 TCCTCCAATCCCTAGTC-AAAAATGAGTCTCGTATCCGTCTCGTTACGTTGCCCGAGGTC 254
Query 272 CAAAACCCTCCACCAATGGAGCTATTTGTGAAAGCTT-CCGAATCTTACATTCTTGAATA 330
|||||||||||||||||||| || |||||| || || | ||||||||||||||||||||
Sbjct 255 CAAAACCCTCCACCAATGGAACTCTTTGTGGAA-TTTGCTGAATCTTACATTCTTGAATA 313
Query 331 CGTCAAGAAAATGGTT-CCTTTGGTCAGAAACGCTCTCTCCACTCTCTTGTCTTCTCGTG 389
||||||||||||| || || || || ||| | | |||||||||||||||||||||||| |
Sbjct 314 CGTCAAGAAAATGATTCCCATT-GTGAGAGATGGTCTCTCCACTCTCTTGTCTTCTCGCG 372
Query 390 ATGAATCGGATTCAGTTCATGTCGCCGGATTAGTTCTTGATTTCTTCTGTGTCCCTTTGA 449
|||||||||||||||||| ||| || ||||| ||||||||||||||||| |||||| |||
Sbjct 373 ATGAATCGGATTCAGTTCGTGTGGCTGGATTGGTTCTTGATTTCTTCTGCGTCCCTATGA 432
Query 450 TCGATGTCGGAAACGAGTTTAATCTCCCTTCTTACATCTTCTTGACGTGTAGCGCAAGTT 509
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 433 TCGATGTGGGAAACGAGTTTAATCTCCCTTCTTACATTTTCTTGACGTGTAGCGCAGGGT 492
Query 510 TCTTGGGTATGATGAAGTATCTTCTGGAGAGAAACCGCGAAACCAAACCGGAACTTAACC 569
|||||||||||||||||||||||| |||||| ||||| ||| |||| ||||| ||| ||
Sbjct 493 TCTTGGGTATGATGAAGTATCTTCCAGAGAGACACCGCAAAATCAAATCGGAATTTACCC 552
Query 570 GGAGCTCTGACGAGGAAACAATA-TC-AGTTCCTGGTTTTGTTAACTCCGTTCCGGTTAA 627
|||||||| ||||||| || | | | ||||||||||||| ||||| ||||| |||
Sbjct 553 GGAGCTCTAACGAGGAGTTAA-ACCCTA-TTCCTGGTTTTGTCAACTCTGTTCCAACTAA 610
Query 628 AGTTTTGCCACCGGGTTTGTTCACGACTGAGTCTTACGAAG-CTTGGGTCGAAATGGCGG 686
|||||||| | ||| |||||| || ||| |||||| || ||||||||| | | || |
Sbjct 611 GGTTTTGCCGTCAGGTCTGTTCATGAAAGAGACTTACG-AGCCTTGGGTCGTACTAGCCG 669
Query 687 AAAGGTTCCCTGAAGCCAAGGGTATTTTGGTCAATTCATTTGA-ATCTCTAGAACGTAAC 745
| || || |||||||| |||||||||||||| ||||| | | |||||| || | |||
Sbjct 670 AGAGATTTCCTGAAGCTAAGGGTATTTTGGTAAATTC-CTACACATCTCTCGAGCCAAAC 728
Query 746 GCTTTTGATTATTTCGATCGTCGTCCGGATAATTACCCACCCGTTTACCCAATCGGGCCA 805
| |||| | |||||||||||| |||||||||| |||||| |||||||||||||||||||
Sbjct 729 GGTTTTAAATATTTCGATCGTTGTCCGGATAACTACCCAACCGTTTACCCAATCGGGCCG 788
Query 806 ATTCTATGCTCCAACGATCGTCCGAATTTGGATTTATCGGAACGAGACCGGATCTTGAA- 864
||| ||||||||||||| |||||||||||||| | ||||||||| || |||||| | ||
Sbjct 789 ATTTTATGCTCCAACGACCGTCCGAATTTGGACTCATCGGAACGCGATCGGATCAT-AAG 847
Query 865 ATGGCTCGATGACCAACCCGAGTCATCTGTTGTGTTTCTCTGCTTCGGGAGCTTGAAGAG 924
||||||||||||||||||||||||||| || ||||| || || ||||||||||||||||
Sbjct 848 ATGGCTCGATGACCAACCCGAGTCATCAGTCGTGTTCCTTTGTTTCGGGAGCTTGAAGAA 907
Query 925 TCTC-GCTGCGT-CTCAGATTAAAGAGATCGCTCAAGCCTTAGAGCTCGTCGGAAT-CAG 981
|||| | ||| | ||||||| || |||||||||||||||||||||||||| |||| ||
Sbjct 908 TCTCAG-TGC-TACTCAGATCAACGAGATCGCTCAAGCCTTAGAGCTCGT-TGAATGCAA 964
Query 982 ATTCCTCTGGTCGATT-CGAACGGACCCGAAGGAGTACGCGAGCCCGAACGAGATTTTAC 1040
|||| |||||||| || ||||| |||||||||||||||| |||||| ||||| ||||
Sbjct 965 ATTCATCTGGTCG-TTCCGAACCAACCCGAAGGAGTACGCAAGCCCGTACGAGGCCTTAC 1023
Query 1041 CGGACGGGTTTATGAACCGAGTCATGGGTTTGGGCCTTGTTTGTGGTTGGGCTCCTCAAG 1100
| |||||||| ||| |||| ||||||| | ||||| ||||||||||||||||||||||
Sbjct 1024 CAGACGGGTTCATGGACCGGGTCATGGATCAAGGCCTCGTTTGTGGTTGGGCTCCTCAAG 1083
Query 1101 TTGAAATTCTGGCCCATAAAGCAATTGGAGGGTTCGTGTCACACTGCGGTTGGAACTCGA 1160
|||||||| | || |||||||| | ||||| || || || |||||||||||||||||||
Sbjct 1084 TTGAAATTTTAGCTCATAAAGCTGTCGGAGGATTTGTATCGCACTGCGGTTGGAACTCGA 1143
Query 1161 TATTGGAGAGTTTGCGTTTCGGAGTTCCAATTGCCACGTGGCCAATGTACGCGGAACAAC 1220
|||| || |||||| ||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1144 TATTAGAAAGTTTGGGTTTCGGCGTTCCAATCGCCACGTGGCCAATGTACGCAGAACAAC 1203
Query 1221 AACTAAACGCGTTCACGATTGTGAAGGAGCTTGGTTTGGCGTTGGAGATGCGGTTGGATT 1280
||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||||
Sbjct 1204 AACTAAACGCGTTCACGATGGTGAAGGAACTTGGTTTAGCCTTGGAGATGCGGTTGGATT 1263
Query 1281 ACGTGTCGGAATATGGAGAAATCGTGAAAGCTGATGAAATCGCAGGAGCC-GTACGATCT 1339
||||||||||| ||||||| || || ||||||||||||||||||||| || || |||||
Sbjct 1264 ACGTGTCGGAAGATGGAGATATAGTAAAAGCTGATGAAATCGCAGGAACCATTA-GATCT 1322
Query 1340 TTGATGGACGGTGAGGATGTGCCGAGGAGGAAACTGAAGGAGATTGCGGAGGCGGGAAAA 1399
|| |||||||||| ||||||||| | ||| ||| ||||||| ||||| ||||||||||||
Sbjct 1323 TTAATGGACGGTGTGGATGTGCCAAAGAGTAAAGTGAAGGAAATTGCTGAGGCGGGAAAA 1382
Query 1400 GAGGCTGTGATGGACGGTGGATCTTCGTTTGTTGCGGTTAAAAGATTCAT 1449
|| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GAAGCTGTTATGGACGGTGGATCTTCGTTTGTTGCGGTTAAAAGATTCAT 1432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5