BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29750.1
Length=1970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933461 jgi|Araly1|933461|scaffold_401449.1 2224 0.0
Ahg481893 jgi|Araly1|481893|fgenesh2_kg.4__953__AT2G29740.1 1352 0.0
> Ahg933461 jgi|Araly1|933461|scaffold_401449.1
Length=1489
Score = 2224 bits (1204), Expect = 0.0
Identities = 1387/1476 (94%), Gaps = 10/1476 (1%)
Strand=Plus/Plus
Query 172 TAGTATGGGGAAGCAAGAAGATGCAGAGCTCGTCATCATACCTTTCCCTTTCTCCGGACA 231
||||||||||| ||||||||| ||||||||||||||||| |||||||| |||||||| ||
Sbjct 17 TAGTATGGGGATGCAAGAAGAAGCAGAGCTCGTCATCATCCCTTTCCCCTTCTCCGGGCA 76
Query 232 CATTCTCGCAACAATCGAACTCGCCAAACGTCTCATAAGTCAAGACAATCCTCGGATCCA 291
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 77 CATTCTCGCAACCATCGAACTCGCGAAACGTCTCATAAGTCAAGACAATCCTCGGATCCA 136
Query 292 CACCATCACCATCCTCTATTGGGGATTACCTTTTATTCCTCAAGCTGACACAATCGCTTT 351
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 137 CACCATCACCATCCTCTATTGGGGACTACCCTTTATTCCTCAAGCTGACACAATCGCTTT 196
Query 352 CCTCCGATCCCTAGTCAAAAATGAGCCTCGTATCCGTCTCGTTACGTTGCCCGAAGTCCA 411
||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 197 CCTCCAATCCCTAGTCAAAAATGAGTCTCGTATCCGTCTCGTTACGTTGCCCGAGGTCCA 256
Query 412 AGACCCTCCACCAATGGAACTCTTTGTGGAATTTGCCGAATCTTACATTCTTGAATACGT 471
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 257 AAACCCTCCACCAATGGAACTCTTTGTGGAATTTGCTGAATCTTACATTCTTGAATACGT 316
Query 472 CAAGAAAATGGTTCCCATCATCAGAGAAGCTCTCTCCACTCTCTTGTCTTCCCGCGATGA 531
|||||||||| ||||||| | ||||| | ||||||||||||||||||||| ||||||||
Sbjct 317 CAAGAAAATGATTCCCATTGTGAGAGATGGTCTCTCCACTCTCTTGTCTTCTCGCGATGA 376
Query 532 ATCGGGTTCAGTTCGTGTGGCTGGATTGGTTCTTGACTTCTTCTGCGTCCCTATGATCGA 591
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 377 ATCGGATTCAGTTCGTGTGGCTGGATTGGTTCTTGATTTCTTCTGCGTCCCTATGATCGA 436
Query 592 TGTAGGAAACGAGTTTAATCTCCCTTCTTACATTTTCTTGACGTGTAGCGCAGGGTTCTT 651
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TGTGGGAAACGAGTTTAATCTCCCTTCTTACATTTTCTTGACGTGTAGCGCAGGGTTCTT 496
Query 652 GGGTATGATGAAGTATCTTCCAGAGAGACACCGCGAAATCAAATCGGAATTCAACCGGAG 711
|||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 497 GGGTATGATGAAGTATCTTCCAGAGAGACACCGCAAAATCAAATCGGAATTTACCCGGAG 556
Query 712 CT-TCAACGAGGAGTTGAATC-TCATTCCTGGTTATGTCAACTCTGTTCCTACTAAGGTT 769
|| | ||||||||||| || | | |||||||||| ||||||||||||||| |||||||||
Sbjct 557 CTCT-AACGAGGAGTTAAACCCT-ATTCCTGGTTTTGTCAACTCTGTTCCAACTAAGGTT 614
Query 770 TTGCCGTCAGGTCTATTCATGAAAGAGACCTACGAGCCTTGGGTCGAACTAGCAGAGAGG 829
|||||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||
Sbjct 615 TTGCCGTCAGGTCTGTTCATGAAAGAGACTTACGAGCCTTGGGTCGTACTAGCCGAGAGA 674
Query 830 TTTCCTGAAGCTAAGGGTATTTTGGTTAATTCATACACAGCTCTCGAGCCAAACGGTTTT 889
|||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 675 TTTCCTGAAGCTAAGGGTATTTTGGTAAATTCCTACACATCTCTCGAGCCAAACGGTTTT 734
Query 890 AAATATTTCGATCGTTGTCCGGATAACTACCCAACCATTTACCCAATCGGGCCGATATTA 949
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 735 AAATATTTCGATCGTTGTCCGGATAACTACCCAACCGTTTACCCAATCGGGCCGATTTTA 794
Query 950 TGCTCCAACGACCGTCCGAATTTGGACTCATCGGAACGAGATCGGATCATAACTTGGCTA 1009
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 795 TGCTCCAACGACCGTCCGAATTTGGACTCATCGGAACGCGATCGGATCATAAGATGGCTC 854
Query 1010 GATGACCAACCCGAGTCATCGGTCGTGTTCCTCTGTTTCGGGAGCTTGAAGAATCTCAGC 1069
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 855 GATGACCAACCCGAGTCATCAGTCGTGTTCCTTTGTTTCGGGAGCTTGAAGAATCTCAGT 914
Query 1070 GCTACTCAGATCAACGAGATAGCTCAAGCCTTAGAGATCGTTGACTGCAAATTCATCTGG 1129
|||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||
Sbjct 915 GCTACTCAGATCAACGAGATCGCTCAAGCCTTAGAGCTCGTTGAATGCAAATTCATCTGG 974
Query 1130 TCGTTTCGAACCAACCCGAAGGAGTACGCGAGCCCTTACGAGGCTCT-ACCACACGGGTT 1188
||||| ||||||||||||||||||||||| ||||| |||||||| || |||| |||||||
Sbjct 975 TCGTTCCGAACCAACCCGAAGGAGTACGCAAGCCCGTACGAGGC-CTTACCAGACGGGTT 1033
Query 1189 CATGGACCGGGTCATGGATCAAGGCATTGTTTGTGGTTGGGCTCCTCAAGTTGAAATCCT 1248
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1034 CATGGACCGGGTCATGGATCAAGGCCTCGTTTGTGGTTGGGCTCCTCAAGTTGAAATTTT 1093
Query 1249 AGCCCATAAAGCTGTGGGAGGATTCGTATCTCATTGTGGTTGGAACTCGATATTGGAGAG 1308
||| ||||||||||| |||||||| ||||| || || ||||||||||||||||| || ||
Sbjct 1094 AGCTCATAAAGCTGTCGGAGGATTTGTATCGCACTGCGGTTGGAACTCGATATTAGAAAG 1153
Query 1309 TTTGGGTTTCGGCGTTCCAATCGCCACGTGGCCGATGTACGCGGAACAACAACTAAACGC 1368
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1154 TTTGGGTTTCGGCGTTCCAATCGCCACGTGGCCAATGTACGCAGAACAACAACTAAACGC 1213
Query 1369 GTTCACGATGGTGAAGGAGCTTGGTTTAGCCTTGGAGATGCGGTTGGATTACGTGTCGGA 1428
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 GTTCACGATGGTGAAGGAACTTGGTTTAGCCTTGGAGATGCGGTTGGATTACGTGTCGGA 1273
Query 1429 AGATGGAGATATAGTGAAAGCTGATGAGATCGCAGGAACCGTTAGATCTTTAATGGACGG 1488
||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1274 AGATGGAGATATAGTAAAAGCTGATGAAATCGCAGGAACCATTAGATCTTTAATGGACGG 1333
Query 1489 TGTGGATGTGCCGAAGAGTAAAGTGAAGGAGATTGCTGAGGCGGGAAAAGAAGCTGT--- 1545
|||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1334 TGTGGATGTGCCAAAGAGTAAAGTGAAGGAAATTGCTGAGGCGGGAAAAGAAGCTGTTAT 1393
Query 1546 GGACGGTGGATCTTCGTTTCTTGCGGTTAAAAGATTCATCGGTGACTTGATCGACGGCGT 1605
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1394 GGACGGTGGATCTTCGTTTGTTGCGGTTAAAAGATTCATTGGTGACTTGATCGACGGCGT 1453
Query 1606 TTCTATAAGTAAGTAGAAATGCG-TCGTTTTCATGT 1640
||||||||| ||||||||| ||| ||||||||||||
Sbjct 1454 TTCTATAAGGAAGTAGAAACGCGGTCGTTTTCATGT 1489
> Ahg481893 jgi|Araly1|481893|fgenesh2_kg.4__953__AT2G29740.1
Length=1616
Score = 1352 bits (732), Expect = 0.0
Identities = 1210/1436 (84%), Gaps = 51/1436 (4%)
Strand=Plus/Plus
Query 176 ATGG-GGAAGCAAG-AAGATGCAGAGCTCGTCA-TCATACC-TTTCCCTTTCTCC-GGAC 230
|||| || || ||| |||| ||||||||| | | |||| || ||| || || || ||||
Sbjct 17 ATGGAGG-AG-AAGCAAGAAGCAGAGCTCAT-ATTCATCCCATTT-CCAATC-CCTGGAC 71
Query 231 ACATTCTCGCAACAATCGAACTCGCCAAACGTCTCAT-AAGTCA-AGACAATCCTCGGAT 288
|||| || || |||||||||||||| ||||||||||| || ||| | || || ||||||
Sbjct 72 ACATGCTTGCCACAATCGAACTCGCGAAACGTCTCATCAA-TCACAAAC-CTCGTCGGAT 129
Query 289 CCACACCATCACCATCCTCTATTGGGGATTACCTTTTATTCCTCAAGCTGACACAATCGC 348
||| ||||||||||||||| ||||| | ||||||||| |||||||| ||||||| ||| |
Sbjct 130 CCATACCATCACCATCCTCCATTGGAGCTTACCTTTTCTTCCTCAATCTGACACTATCTC 189
Query 349 TTTCCTCCGATCCCTAGT-CAAAAATGAGCCTCGTATCCGTCTCGTTACGTTGCCCGAAG 407
|||||| ||||||| | |||| | ||| ||||||||||||| ||||| || ||||| |
Sbjct 190 CTTCCTCAAATCCCTAATCCAAACA-GAGTCTCGTATCCGTCTTGTTACCTTACCCGACG 248
Query 408 T-CCAAGACCCTCCACCAATGGAACTCTTT-GTGGAA-TTTGCCGAATCTTACATTCTTG 464
| |||| ||||||||||||||||||| ||| ||| || || | ||||||||||||||||
Sbjct 249 TCCCAA-ACCCTCCACCAATGGAACT-TTTCGTGAAAGCTT-CAGAATCTTACATTCTTG 305
Query 465 AATACGTCAAGAAAATGGTTCCCATCATCAGAGAAGCTCTCTCCACTCTCTTGTCTTCCC 524
||| |||||||||||||||||| | | | | ||||||||||||||||||||||||| |
Sbjct 306 AATTCGTCAAGAAAATGGTTCCTTTGGTTAAAAAAGCTCTCTCCACTCTCTTGTCTTCTC 365
Query 525 GCGATGAATCGGGTTCAGTTCGTGTGGCTGGATTGGTTCTTGACTTCTTCTGCGTCCCTA 584
| |||||||||| |||||||||||| || ||||| ||||| || |||||||| ||||||
Sbjct 366 GTGATGAATCGGATTCAGTTCGTGTCGCCGGATTAGTTCTCGATTTCTTCTGTGTCCCTT 425
Query 585 TGATCGATGTAGGAAACGAGTTTAATCTCCCTTCTTACATTTTCTTGACGTGTAGCGCAG 644
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 TGATTGATGTTGGAAACGAGTTTAATCTCCCTTCTTACATTTTCTTGACGTGTAGCGCAA 485
Query 645 GGTTCTTGGGTATGATGAAGTATCTTCCAGAGAGACACCGCGAAATCAAATCGGAATTCA 704
| ||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |
Sbjct 486 GTTTCTTGGGTATGATGAAGTATCTCCCAGAGAGACACCGCAAAATCAAACCGGAATTTA 545
Query 705 ACCGGAGCT-TCAACGAGGAGTTGAAT-CTCA-TTCCTGG-TTATGTCAACTCTGTTCCT 760
||||||||| | |||||| ||| | | ||||||| || ||| ||||| |||||
Sbjct 546 ACCGGAGCTCTGG-CGAGGAAAC-AATAC-CGGTTCCTGGCTT-TGTTAACTCCGTTCCG 601
Query 761 ACTAAGGTTTTGCCGTCAGGTCTATTCATGAAAGAGACCTACGA-GCCTTGGGTCGAACT 819
|||||||||||| | ||||| ||||||| |||| | ||||| || |||||||||| |
Sbjct 602 GTTAAGGTTTTGCCACCGGGTCTGTTCATGAGAGAGTCTTACGAAGC-TTGGGTCGAAAT 660
Query 820 AGCAGAGAGGTTTCCTGAAGCTAAGGGTATTTTGGTTAATTCATAC-ACAGCTCTCGAGC 878
|| |||||||| |||||||| |||||||| ||||| ||||| | | | | |||| || |
Sbjct 661 GGCGGAGAGGTTCCCTGAAGCCAAGGGTATCTTGGTAAATTCTTTCGA-ATCTCTAGAAC 719
Query 879 CAAACGGTTTTAAATATTTCGATCGTTGTCCGGATAACTACCCAACCATTTACCCAATCG 938
|||| |||| | |||||||||| | |||||||||| |||||| || ||||||||||||
Sbjct 720 GTAACGCTTTTGATTATTTCGATCATCGTCCGGATAATTACCCACCCGTTTACCCAATCG 779
Query 939 GGCCGATAT-TATGCTCCAACGACCGTCCGAATTTGGACTCATCGGAACGAGATCGGATC 997
||||||| | ||||||||||||| |||||||||||||| | |||||||| ||||||||||
Sbjct 780 GGCCGAT-TCTATGCTCCAACGATCGTCCGAATTTGGATTTATCGGAACAAGATCGGATC 838
Query 998 ATAACTTGGCTAGATGACCAACCCGAGTCATCGGTCGTGTTCCTCTGTTTCGGGAGCTTG 1057
| | ||||| |||||||||||||||||||| || |||||| |||| ||||||||||||
Sbjct 839 TTGAGATGGCTCGATGACCAACCCGAGTCATCAGTTGTGTTCTTCTGCTTCGGGAGCTTG 898
Query 1058 AAGAATCTCAGC-GCTACTCAGATCAACGAGATAGCTCAAGCC-TTAGAGATCGTTG-AC 1114
|||| |||| || ||| ||||||| || ||||| ||||||||| || ||| |||| | |
Sbjct 899 AAGAGTCTC-GCTGCTTCTCAGATTAAAGAGATCGCTCAAGCCATT-GAGCTCGTCGGAT 956
Query 1115 TGCAAATTCATCTGGTCGTTTCGAACCA-ACCCGAAGGAGTACGCGAGCCCTTACGAGGC 1173
| || |||| |||||||| ||||||| | | ||||| |||||| ||| ||| ||||||
Sbjct 957 T-CAGATTCCTCTGGTCGATTCGAAC-AGATCCGAACGAGTACCCGAACCCGTACGAGAT 1014
Query 1174 TCTACCACACGGGTTCATGGACCGGGTCATGGATCAAGG-CATTGTTTGTGGTTGGGCTC 1232
| |||| ||||||| ||| |||||||||||| | ||| | ||||||||||||||||||
Sbjct 1015 TTTACCGGACGGGTTTATGAACCGGGTCATGGGTTTAGGTC-TTGTTTGTGGTTGGGCTC 1073
Query 1233 CTCAAGTTGAAATCCTAGCCCATAAAGCTGTGGGAGGATTCGTATCTCATTGTGGTTGGA 1292
||||||| ||||| || ||||||||||| | ||||| ||||| || || || |||||||
Sbjct 1074 CTCAAGTGGAAATTCTGGCCCATAAAGCAATCGGAGGGTTCGTGTCACACTGCGGTTGGA 1133
Query 1293 ACTCGATATTGGAGAGTTTGGGTTTCGGCGTTCCAATCGCCACGTGGCCGATGTACGCGG 1352
||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||| |
Sbjct 1134 ACTCGATTTTGGAGAGTTTGCGTTTCGGGGTTCCAATCGCCACGTGGCCAATGTACGCAG 1193
Query 1353 AACAACAACTAAACGCGTTCACGATGGTGAAGGAGCTTGGTTTAGCCTTGGAGATGCGGT 1412
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 1194 AACAACAACTAAACGCGTTCACGATTGTGAAGGAGCTTGGTTTGGCGTTGGAGATGCGGT 1253
Query 1413 TGGATTACGTGTCGGAAGATGGAGATATAGTGAAAGCTGATGAGATCGCAGGAACCGTTA 1472
|||||||||||| || ||||||| || |||||||||||||| |||||||| |||| |
Sbjct 1254 TGGATTACGTGTGGGCTCATGGAGAAATCGTGAAAGCTGATGAAATCGCAGGTGCCGT-A 1312
Query 1473 -GATCTTTAATGGACGGTGTGGATGTGCCGAAGAGTAAAGTGAAGGAGATTGCTGAGGCG 1531
|||||||||||||||||| |||||||| || ||| ||| ||||||||||||| ||||||
Sbjct 1313 CGATCTTTAATGGACGGTGAGGATGTGCGGAGGAGGAAACTGAAGGAGATTGCGGAGGCG 1372
Query 1532 GGAAAAGAAGCTGTG--G-ACGGTGGATCTTCGTTTCTTGCGGTTAAAAGATTCAT 1584
| |||||| |||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 1373 GCAAAAGAGGCTGTGATGGACGGTGGATCTTCGTTTGTTGCGGTTAAAAGATTCAT 1428
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74047436280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5