BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29770.1
Length=1363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900750 jgi|Araly1|900750|Al_scaffold_0004_1400 1197 0.0
Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1 621 4e-177
> Ahg900750 jgi|Araly1|900750|Al_scaffold_0004_1400
Length=1134
Score = 1197 bits (648), Expect = 0.0
Identities = 1011/1178 (86%), Gaps = 58/1178 (5%)
Strand=Plus/Plus
Query 3 ATGGTTTTCATCTCTGAAACTTCCGACGACGGCTCCAATGGCGGCGATCCAACCAAGAAT 62
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTTTTCATCTCTGAAACTTCCGACGATGGCTCTAATGGCGGCGATCCAACCAAGAAT 60
Query 63 CCGCaagaagaagaagaagagaaTCTTCCTCCGATTCCTCAAGGAATCCCAGACGAACTC 122
||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 61 GCGCAACAAGAAAAAGAAGAGAATCTTCCTCCGATTCCTCAAGAAATCCCAGAAGAACTC 120
Query 123 ATCGAAAGTACCGTCTTACTAATCCGGAGAT-GTCATTACCCGACGCTATCTCTCCTCTC 181
||||||||||||||| ||| || |||| | ||||||||||| ||||||||||||||||
Sbjct 121 ATCGAAAGTACCGTCGCACTCGTCAGGAG-TAGTCATTACCCGTCGCTATCTCTCCTCTC 179
Query 182 CAAAACCTTTCGTCGCGTTATCTCTTCTTC-GGAACTCTACAAAAGCCGCTT-CATCCTC 239
|||| ||||||||||||| || |||||| | || ||||||| | |||||||| | |||||
Sbjct 180 CAAAGCCTTTCGTCGCGTCATATCTTCTCCAGG-ACTCTACCACAGCCGCTTGC-TCCTC 237
Query 240 AAC-CTCACCGACTCAGTTCTTTACGCCTTGATCGGATTCTCTCCTTATAATACCACAAA 298
| ||||||||| | ||||||||||| |||||||| || | | |
Sbjct 238 -GCACTCACCGACCCGGTTCTTTACGCTTTGATCGG-----------AT--T----GAGA 279
Query 299 CTTGTACATTCTCAATTGTAACATTCCAAGAAACATCTCTTTAC-ACTTGAGAGAAATCA 357
| |||||||||||||| | ||| |||||||||| |||||||||| | ||||| ||||||
Sbjct 280 C-TGTACATTCTCAATCGAAACGTTCCAAGAAATATCTCTTTACGA-TTGAGCGAAATCG 337
Query 358 AATCACTTCCTCCTCTGAATCATGGATCTGCGGTGGTCACAATCGGATACCATATGTATG 417
||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||
Sbjct 338 GTTCACTTCCTCCTCTGAATCATGGATCTGCTGTTGTCACCATCGGATACGATATGTATG 397
Query 418 TAATCGGTGGACACAACCGCCTACATCAACCCACATCGAATGTGTCTATCATCGATTTGA 477
||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 398 TAATCGGTGGACACAACAACCAACATCAACCCACATCGAATGTGTTTATCATCGATTTGA 457
Query 478 GATTTCATACGTCT-TGCTCGCTCCCGAGAATGCAGAGAAC-TCGCGTCTACGCAGCTGC 535
|||||||||||| | | ||| ||||| |||||| |||| | ||||||| ||||||| ||
Sbjct 458 GATTTCATACGTGTAT-CTCTCTCCCAAGAATGAAGAG-GCGTCGCGTCAACGCAGCCGC 515
Query 536 AGGAGTAATTGACGGAAGGATTTATGTGATCGGAGGTTGCGTGAAGCGAAATGATCATTG 595
|||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 516 AGGAGTAATTGACGGAAGGATTCATGTGATCGGAGGTTGCGCCAAGCTAAATGATCATTG 575
Query 596 GATCGAAGTGTTCGATATAGAGAATCGGATTTGGAGTAGTGTGCCTCATCATCGATACTG 655
||||||||||||||||||||||||||||| ||||||| ||||||| ||| | | ||
Sbjct 576 GATCGAAGTGTTCGATATAGAGAATCGGACATGGAGTACTGTGCCTGATC--C-AGACCA 632
Query 656 TAACGGTTCTAGTTTGAGAGGAGAAGGGTTTGTGACATCAGTGGTGATGCAA-AACAAGA 714
|||| ||||||||||||||||| ||||||| |||||| |||||||||||| || | ||
Sbjct 633 TAACAATTCTAGTTTGAGAGGAGGAGGGTTTTTGACATGTGTGGTGATGCAAGAA-ATGA 691
Query 715 TTTACATTTTGGATTCTCTGTTTGGTTTTGCTTACGAACCAAGACACGGTACATTGCAGT 774
|||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 692 TTTACATTTTGGATACTCTGTTTGGTTTTGCTTACGAACCAAGACAAGGTTTATGGCAGT 751
Query 775 C-ATTAGGATTTGAAACTCAGTTCATGTTTCTTTGGCGCGACCCGTGTTGTGTGATTGAG 833
| ||| ||||| ||||||||||| | ||| | || | | | | |||||||||| |||
Sbjct 752 CAATT-GGATTGGAAACTCAGTTGAAGTTGCATT-G-GAAAGTC-AGTTGTGTGATCGAG 807
Query 834 GGTTTGTTGTATTGTATTGATCCTATGTGTGTTCTTGGACATGC-AATAGTTGTTTATGA 892
| |||| |||||||||||||||||| | | | | |||||| | |||||| || |||||
Sbjct 808 GATTTGCTGTATTGTATTGATCCTA---G-G-T-TGGGACAT-CAAATAGTGGTATATGA 860
Query 893 TCCGAATGAGTTGATTTGGAGACGTGTGAAGGGGGCATATATTTTGCCTAAGTTT-TGTT 951
||||||||||||| ||||||||| ||||||||| |||||| |||||||| | ||| ||||
Sbjct 861 TCCGAATGAGTTGGTTTGGAGACCTGTGAAGGGTGCATATGTTTTGCCTGA-TTTCTGTT 919
Query 952 ATTATCAGTGTAAAATGGCGAATTTTGGTGGGAAGTTGGCAATTTTGGGATGT-TCTAAT 1010
|| ||||||||||||||||||||||||| |||||| ||| |||||||| | | | |||
Sbjct 920 ATAATCAGTGTAAAATGGCGAATTTTGGCGGGAAGCTGGTGATTTTGGGCTCTGT-TAAA 978
Query 1011 TCCAGCCAGCGTGGTTTGAAAGATGTTTGGT-TCGTAGAGATTGAGTTGGA-AAATCGTC 1068
||||||| || ||||||| |||||||||||| || ||||||| | |||||| ||| ||||
Sbjct 979 TCCAGCCTGCATGGTTTGGAAGATGTTTGGTGTC-TAGAGATCGCGTTGGAGAAA-CGTC 1036
Query 1069 AAAGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTAGATCAGTGAAGT 1128
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1037 AAGGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTAAATCAGTGAACT 1096
Query 1129 CGCCTTCCATTGATCTGTTTCGCTCTGTTACGTTTTGA 1166
||||||||||||||||| ||||||||||||||||||||
Sbjct 1097 CGCCTTCCATTGATCTGCTTCGCTCTGTTACGTTTTGA 1134
> Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1
Length=1435
Score = 621 bits (336), Expect = 4e-177
Identities = 937/1214 (77%), Gaps = 94/1214 (8%)
Strand=Plus/Plus
Query 66 CaagaagaagaagaagagaaTCTTCCTCCGATTCCTCAAGGAATCCCAGACGAACTCATC 125
||||||||||||| |||||||||||||||||| |||| | |||||||| | | |||||||
Sbjct 100 CAAGAAGAAGAAGCAGAGAATCTTCCTCCGATACCTCGACGAATCCCACAAGCACTCATC 159
Query 126 GA-AAGTACCGTCTTACTAATCCGGAGATGTCATTACCCGACGCTATCTCTCCTCTCCAA 184
| ||| |||||| ||| ||||| |||||||| |||||| |||||||||||||||| ||
Sbjct 160 -AGAAGAACCGTCGCACTCATCCGAAGATGTCACTACCCGTCGCTATCTCTCCTCTCTAA 218
Query 185 AACCTTTCGTCGCGTTATCTCTTCTTCGGAACTCTACAAAAGCCGCTTCA-TCCTCAACC 243
| ||||||||||||| |||||||| |||||||| || | || ||||| | | ||| |||
Sbjct 219 AGCCTTTCGTCGCGTAATCTCTTCGCCGGAACTCCACCACAGACGCTTGAGT-CTCCACC 277
Query 244 TCACCG-ACTCAGTTCTTTACGCCTTGATCGGATTCTCTCCTTAT-AATACCACAAACTT 301
| |||| || | ||||||||||| |||||||||||| || || || | || | | ||
Sbjct 278 TAACCGAAC-CGGTTCTTTACGCTTTGATCGGATTCCCTTCTCATGGTTTCC-CGACCTG 335
Query 302 GTACATTCTCAATTGTAACATTCCAAGAAACATCTC-TTTACACTTGAGAGAAATCAAAT 360
|| ||||||||| |||||||||||||||||| | || | || |||| ||||| |
Sbjct 336 GTTCATTCTCAACCACAACATTCCAAGAAACATCCCATTAAGAC-TGAGCCAAATCGGTT 394
Query 361 CACTTCCTCCTCTGAATCATGGATCTGCGGTGGTCACAATCGGATACCATATGTATGTAA 420
||||||||||| |||||| ||| ||||| |||||||||||||| ||| | |||||||| |
Sbjct 395 CACTTCCTCCTATGAATCCTGGTTCTGCTGTGGTCACAATCGGCTACAAGATGTATGTGA 454
Query 421 TCGGTGGACA-CA-ACCGCCTACA-TCAACCCA--CATCGAATGTGTCTATCATCGATTT 475
|||||||| | | | ||| || | || ||| | || ||||| | ||||||| |
Sbjct 455 TCGGTGGA-ATGATA-GGCC--CATTTAA-CCATGTAAAGACTGTGTTTGTCATCGA-CT 508
Query 476 G-AGATTTCATACGTCTTGCTCGCTCCCGAGAATGCAGAGAACTCGCGTCTA-C--GCAG 531
| ||| | ||||||| | || ||||| | ||||| || || ||| || | ||||
Sbjct 509 GTAGAGTCCATACGTGTAACTATCTCCCAACTATGCATAGGGCT--CGT-TACCGTGCAG 565
Query 532 CT-GCAGGAGTAATTGACGGAAGGATTTATGTGATCGGAGGTTGCGTGAAGCGAAATGAT 590
| |||| |||||||||||||| ||||||||| ||||||||||||| |||||| ||||
Sbjct 566 -TCGCAGAAGTAATTGACGGAAAGATTTATGTCATCGGAGGTTGCGAGAAGCGGTATGAG 624
Query 591 CATTGGATCGAAGTGTTCGATATAGAGAATCGGATTTGGAGTAGTGTGCCTCAT-CAT-C 648
|||||||||||||||||||| |||||||| ||| |||||||| ||| ||| || ||| |
Sbjct 625 GATTGGATCGAAGTGTTCGATGTAGAGAATGGGACTTGGAGTACTGTTCCTGATCCATCC 684
Query 649 GATACTGTAACGGTTCTAGTTTGAGAGGAGAAGGGTTTGTGACATCAGTGGTGATGCAAA 708
| || || | ||||||||| ||||| ||||||||||||||| || ||||||||||
Sbjct 685 CCT--TGGAA--G-TCTAGTTTGCCAGGAGGAGGGTTTGTGACATCTGTTGTGATGCAAA 739
Query 709 ACAAGATTTACATTTTGGATTCTCTGTTTGGTTTTGCTTACGAACC-AA-GACACGGTAC 766
|||||||||||||||||||| |||| |||||| | ||| || || || || |||||
Sbjct 740 ACAAGATTTACATTTTGGATGATCTGCGTGGTTTGGTTTATGATCCCAATGAT--GGTAC 797
Query 767 ATTGCAGTCATTAGGATT-TGAAACTCAGTTCATGT-TTCTTTGGCGCGACCCGTGTTGT 824
|| | |||||| ||| ||||||| |||| |||| || || || || | |||||||||
Sbjct 798 ATGGGAGTCATG-GGAGCCTGAAACTAAGTTGATGTCTTATT-GGAGCAAGCCGTGTTGT 855
Query 825 GTGATTGAGGGTTTGTTGTATTGTATTG-ATCCTATGTGTGTTCTTGGACATGCAATAGT 883
|||||||||| |||||||||| || ||| |||| ||| |||| || || | ||
Sbjct 856 GTGATTGAGGATTTGTTGTATAGT-TTGGATCC-ATG-GTGTG-TT---CA---A---GT 902
Query 884 TGTTTATGATCCGAATG-AGTTGATTTGGAGACGTGTGAAGGGGGCATATATTTTGCCTA 942
|| ||||||| |||| | | | |||||| | ||||| ||| | || ||||||||
Sbjct 903 -GT--ATGATCCAAATGGAAT-GTTTTGGACTCCTGTGATGGGTTTACATGGTTTGCCTA 958
Query 943 AGTTTTGTTATTA-T-CAGT-GTAAAATGGCGAATTTTGGTGGGAAGTTGGCAATTTTGG 999
| | | | |||| | || | |||||||||||||| |||||||||||||| ||||||
Sbjct 959 A-TCT-GA-ATTACTTCAATTGTAAAATGGCGAATGTTGGTGGGAAGTTGATGGTTTTGG 1015
Query 1000 GATGTT-CTAATTCCAGCCAGCGTGGTTTGAA-AGATGTTTGGT-TCGTAGAGATTGAGT 1056
| | | || || | | | |||| || | |||| || ||| | |||||||| | ||
Sbjct 1016 G-TACTACTGATA--A-C-ATT-TGGTGTGTAGAGAT-TT-GGTGT-GTAGAGATCGCGT 1066
Query 1057 TGGAAAATCGTCAAAGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTA 1116
||||||| ||| |||| ||| |||||||||||||| |||||||| ||| | ||||||||
Sbjct 1067 TGGAAAAACGTGAAAGAGGTCAGATTTGGGGGAAGATCGATTCAATGGAGCGTGTGCTTA 1126
Query 1117 GATC-AGTGAA-GTCGCCTTCCATTGATCTGTTTC-GCTCTGTTACGTTTTGATGAT-TC 1172
|||| | |||| | || ||| |||||||| || | ||||||||||||| ||||||| |
Sbjct 1127 GATCCA-TGAACG-CGGCTTATATTGATCT-TTGCCGCTCTGTTACGTTCTGATGATCT- 1182
Query 1173 GTTTGCAG-TTGCAAGGTGAAGGATCTTTT-ATTATATCTACTGTTTT-AGCAGCTTGTT 1229
|| | | ||| |||||||||||||| |||| ||||||| |||| |||||||||||
Sbjct 1183 GTGGGTTGGTTGTTTCGTGAAGGATCTTTTGATTACATCTACTATTTTGAGCAGCTTGTT 1242
Query 1230 GATATGA-AGCAAA 1242
||| | | ||||||
Sbjct 1243 GATTTCAGAGCAAA 1256
Score = 67.6 bits (36), Expect = 2e-10
Identities = 45/49 (92%), Gaps = 1/49 (2%)
Strand=Plus/Plus
Query 1316 TTGTACTAAAT-TCTTAGGAGACTTGTTGAAATGCATATTTGGTTTAGC 1363
|||||||||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 1386 TTGTACTAAAACTCTTACGAGACTTGTTGAAATGCATCTTTGGTTTAGC 1434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51008462946
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5