BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29780.1
Length=1467
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1 1748 0.0
Ahg900750 jgi|Araly1|900750|Al_scaffold_0004_1400 484 6e-136
Ahg320730 jgi|Araly1|320730|fgenesh1_pm.C_scaffold_4000787 204 2e-51
Ahg899437 jgi|Araly1|899437|Al_scaffold_0004_87 56.5 5e-07
> Ahg481897 jgi|Araly1|481897|fgenesh2_kg.4__957__AT2G29780.1
Length=1435
Score = 1748 bits (946), Expect = 0.0
Identities = 1314/1482 (89%), Gaps = 63/1482 (4%)
Strand=Plus/Plus
Query 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTCACGGTGGCGTACCAAACAAGAAA 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTAACGGTGGCGTACCAAACAAGAAA 60
Query 61 CCCGAAGAACTCCACAAGAACCCTAAAGAAGACGATCATCAAGAAGAAGAAGTAGAGAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 61 TCCGAAGAACTCCACAAGAACCCTAAAGAAGACGATCATCAAGAAGAAGAAGCAGAGAAT 120
Query 121 CATCCTCCGATTCCTCGACAAATCCCACAAGCACTCATCAGAAGAACCGTCGCACTCAT- 179
| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTCCTCCGATACCTCGACGAATCCCACAAGCACTCATCAGAAGAACCGTCGCACTCATC 180
Query 180 CAAGAGATGTCATTACCCGTCGCTATCTCTCCTCTCTAAAGCCTTTCGTATCGTAATCTC 239
| | |||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 CGA-AGATGTCACTACCCGTCGCTATCTCTCCTCTCTAAAGCCTTTCGTCGCGTAATCTC 239
Query 240 TTCGCCGGAACTCCACCAAACACGCTCGAGCCTAAACCTAACCGAACCGGTTCTTTACGC 299
|||||||||||||||||| | ||||| ||| || |||||||||||||||||||||||||
Sbjct 240 TTCGCCGGAACTCCACCACAGACGCTTGAGTCTCCACCTAACCGAACCGGTTCTTTACGC 299
Query 300 TTTGATCGGATTCCCTCCTCATAGTTTCCCGAACTGGTTCATTCTCAACCACAACATTAC 359
|||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||| |
Sbjct 300 TTTGATCGGATTCCCTTCTCATGGTTTCCCGACCTGGTTCATTCTCAACCACAACATTCC 359
Query 360 AAGAAACATCCCATTACGATTGAGCGC-TATCGGTTCACTTCCTCCTATGAATCCTGGCT 418
|||||||||||||||| || ||||| | ||||||||||||||||||||||||||||| |
Sbjct 360 AAGAAACATCCCATTAAGACTGAGC-CAAATCGGTTCACTTCCTCCTATGAATCCTGGTT 418
Query 419 CTGCTGTGGTCACAATCGGCTACAAGATGTATGTGATCGGTGGACTGATAGGGCCAAATA 478
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||
Sbjct 419 CTGCTGTGGTCACAATCGGCTACAAGATGTATGTGATCGGTGGAATGATAGGCCCATTTA 478
Query 479 ACCCTGTAAAGACTGTGTTTGTCATCGACTGTAGAGTCCATACGTGTAACTATCTCCCAA 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACCATGTAAAGACTGTGTTTGTCATCGACTGTAGAGTCCATACGTGTAACTATCTCCCAA 538
Query 539 CTATGCATAGGGCTCGTTACCGTGCAGTCGCAGAAGTAATCAACGGAAAGATTTATGTCA 598
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 CTATGCATAGGGCTCGTTACCGTGCAGTCGCAGAAGTAATTGACGGAAAGATTTATGTCA 598
Query 599 TCGGAGGTTGCGAGAAGCGGTACGACGATTGGATCGAAGTGTTCGATGTAGTGACTGGAA 658
|||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |
Sbjct 599 TCGGAGGTTGCGAGAAGCGGTATGAGGATTGGATCGAAGTGTTCGATGTAGAGAATGGGA 658
Query 659 TTTGGAGTACTGTCCCTGATCGATCCCATTTCATGTCTAGTTTGCCAGGAGGAGGGTTTG 718
|||||||||||| ||||||| ||||| || | ||||||||||||||||||||||||||
Sbjct 659 CTTGGAGTACTGTTCCTGATCCATCCCCTTGGAAGTCTAGTTTGCCAGGAGGAGGGTTTG 718
Query 719 TGACATCTGTGGTGATGCAAAACAAGATTTACATTTTGGATGCTAC-GTGTGGTTTGGTT 777
|||||||||| ||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct 719 TGACATCTGTTGTGATGCAAAACAAGATTTACATTTTGGATGAT-CTGCGTGGTTTGGTT 777
Query 778 TATGATCCCATTGATGGTACATGGGAGTCAGGGGAGCTTGGAACTACGTTGAAGTCTTAC 837
|||||||||| ||||||||||||||||||| |||||| || ||||| ||||| ||||||
Sbjct 778 TATGATCCCAATGATGGTACATGGGAGTCATGGGAGCCTGAAACTAAGTTGATGTCTTAT 837
Query 838 TGGTA-CAAGCCGTGTTGTGTGATTGAGGATTTGTTGTATAGTTTTGATCCATACTGTCT 896
||| | ||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 838 TGG-AGCAAGCCGTGTTGTGTGATTGAGGATTTGTTGTATAGTTTGGATCCATGGTGT-- 894
Query 897 TCAAGGTTCTCCGATAAATGTGTATGATCCAAATGTCATGGTTTGGACTCCTATGATGGG 956
| ||| | | |||||||||||||||| ||| ||||||||||| |||||||
Sbjct 895 ----G-TTC----A-A---GTGTATGATCCAAATGGAATGTTTTGGACTCCTGTGATGGG 941
Query 957 TACGGGTATACGTGCTTTTCCTGATCTCGA-TTACTTTGAGTGTAAAATGGCGAATTTTG 1015
| | ||| || ||| ||| |||| || |||||| | ||||||||||||||| |||
Sbjct 942 T-----T-TACATGGTTTGCCTAATCT-GAATTACTTCAATTGTAAAATGGCGAATGTTG 994
Query 1016 GTGGGAAGTTGATGGTTTTTGGTGCTACTTATAACAACCCG-GT-TACAGATACTTGGTG 1073
||||||||||||||||||| ||| ||||| |||||| | || || |||| ||||||
Sbjct 995 GTGGGAAGTTGATGGTTTTGGGTACTACTGATAACATTTGGTGTGTAGAGAT--TTGGTG 1052
Query 1074 CATAGAGATGGCGTTG-ATAAAAGGTGAAACAGGTCCGATTTTGGGGATGATCGATTCAA 1132
||||||| |||||| | |||| |||||| ||||| ||||| ||||| |||||||||||
Sbjct 1053 TGTAGAGATCGCGTTGGA-AAAACGTGAAAGAGGTCAGATTTGGGGGAAGATCGATTCAA 1111
Query 1133 TGGTGCCTGTGCTTAGATCCGTGTACTCGCCTTACATTGATCTTTGTCGCTCTGTTACAT 1192
||| || ||||||||||||| || || || |||| ||||||||||| ||||||||||| |
Sbjct 1112 TGGAGCGTGTGCTTAGATCCATGAACGCGGCTTATATTGATCTTTGCCGCTCTGTTACGT 1171
Query 1193 TTTGATGATCTGTGGGATGGT-GTTTCAGGTCAAGGATCTTTT-ATTACATCTACTGTTT 1250
| |||||||||||||| |||| ||||| | | ||||||||||| |||||||||||| |||
Sbjct 1172 TCTGATGATCTGTGGGTTGGTTGTTTC-G-TGAAGGATCTTTTGATTACATCTACTATTT 1229
Query 1251 TGAGCAGCTTATTGATTTCAGAGCAAATATGAAGAAGAAAAAGTGTGTTCAGAAGCTGTT 1310
|||||||||| ||||||||||||||||||||||||| |||| ||| || |||||||||||
Sbjct 1230 TGAGCAGCTTGTTGATTTCAGAGCAAATATGAAGAA-AAAA-GTG-GTGCAGAAGCTGTT 1286
Query 1311 ATAT------CTGACACCTTTATAGAGTAACTCGTCTTTCTTAACCTTTGTGCAAAAATG 1364
|||| |||||||||| ||||||||| || |||||||| |||||||||||||||||
Sbjct 1287 ATATATATATCTGACACCTT-ATAGAGTAAATCATCTTTCTTTACCTTTGTGCAAAAATG 1345
Query 1365 TGAATACTCTTAACAGAACTGGCCTTGTGTTTGTGTAGAGTTGGCCACTCTTTTGTACTA 1424
||||||||||| | | | ||||||||||||||| ||||||||||||||||||
Sbjct 1346 TGAATACTCTT--C-----T----T-GTGTTTGTGTAGAGTCGGCCACTCTTTTGTACTA 1393
Query 1425 ATATTCTTACGAGACTTGTTGAAATGCATCTTTGGTTTAGCT 1466
| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1394 AAACTCTTACGAGACTTGTTGAAATGCATCTTTGGTTTAGCT 1435
> Ahg900750 jgi|Araly1|900750|Al_scaffold_0004_1400
Length=1134
Score = 484 bits (262), Expect = 6e-136
Identities = 863/1137 (76%), Gaps = 105/1137 (9%)
Strand=Plus/Plus
Query 100 CAAGAAGAAGAAGTAGAGAATCATCCTCCGATTCCTCGACAAATCCCACAAGCACTCATC 159
||| ||||| ||| |||||||| |||||||||||||| | |||||||| ||| |||||||
Sbjct 64 CAACAAGAAAAAGAAGAGAATCTTCCTCCGATTCCTCAAGAAATCCCAGAAGAACTCATC 123
Query 160 AG-AAGAACCGTCGCACTCATCAAGAGAT-GTCATTACCCGTCGCTATCTCTCCTCTCTA 217
| ||| |||||||||||| ||| ||| | |||||||||||||||||||||||||||| |
Sbjct 124 -GAAAGTACCGTCGCACTCGTCAGGAG-TAGTCATTACCCGTCGCTATCTCTCCTCTCCA 181
Query 218 AAGCCTTTCGTATCGTAATCTCTTCGCC-GGAACTCCACCA-AACACGCTCGAGCCTAAA 275
||||||||||| ||| || ||||| || || |||| |||| | | |||| | |||
Sbjct 182 AAGCCTTTCGTCGCGTCATATCTTCTCCAGG-ACTCTACCACAGC-CGCTTGCTCCT-CG 238
Query 276 C-CTAACCGAACCGGTTCTTTACGCTTTGATCGGATTCCCTCCTCATAGTTTCCCGAACT 334
| || ||||| |||||||||||||||||||||||||| | | | ||
Sbjct 239 CACTCACCGACCCGGTTCTTTACGCTTTGATCGGATTG-------A--G-------A-CT 281
Query 335 GGTTCATTCTCAACC-ACAACATTACAAGAAACATCCCATTACGATTGAGCGCTATCGGT 393
| | ||||||||| | | ||| || ||||||| ||| | ||||||||||||| ||||||
Sbjct 282 G-TACATTCTCAATCGA-AACGTTCCAAGAAATATCTCTTTACGATTGAGCGAAATCGGT 339
Query 394 TCACTTCCTCCTATGAATCCTGGCTCTGCTGTGGTCACAATCGGCTACAAGATGTATGTG 453
|||||||||||| |||||| ||| |||||||| ||||| ||||| ||| | ||||||||
Sbjct 340 TCACTTCCTCCTCTGAATCATGGATCTGCTGTTGTCACCATCGGATACGATATGTATGTA 399
Query 454 ATCGGTGGACTGATAGGGCCAA-AT-AACCCTGTAAAGACTGTGTTTGTCATCGACT-GT 510
|||||||||| | | |||| || ||||| | || ||||||| ||||||| | |
Sbjct 400 ATCGGTGGACACA-ACAACCAACATCAACCCAC-ATCGAATGTGTTTATCATCGATTTG- 456
Query 511 AGAGTCCATACGTGTAACTATCTCCCAACTATGCATAGG-G-CTCGTTACCGTGCAGTCG 568
||| | |||||||||| || |||||||| ||| | ||| | | ||| | || ||| ||
Sbjct 457 AGATTTCATACGTGTATCTCTCTCCCAAGAATGAAGAGGCGTCGCGTCAACG--CAGCCG 514
Query 569 CAGAAGTAATCAACGGAAAGATTTATGTCATCGGAGGTTGCGAGAAGCGGTACGA-CGAT 627
||| |||||| |||||| |||| |||| ||||||||||||| |||| | || | ||
Sbjct 515 CAGGAGTAATTGACGGAAGGATTCATGTGATCGGAGGTTGCGCCAAGCTAAATGATC-AT 573
Query 628 TGGATCGAAGTGTTCGATGTAGTGACT-GGA-ATTTGGAGTACTGTCCCTGATCGATCCC 685
|||||||||||||||||| ||| || | ||| || |||||||||| ||||||| | ||
Sbjct 574 TGGATCGAAGTGTTCGATATAGAGAATCGGACAT--GGAGTACTGTGCCTGATCCAGACC 631
Query 686 ATTTCA-TGTCTAGTTTGCCAGGAGGAGGGTTTGTGACATCTGTGGTGATGCAAAACAA- 743
|| || | ||||||||| ||||||||||||| |||||| ||||||||||||| | ||
Sbjct 632 ATAACAAT-TCTAGTTTGAGAGGAGGAGGGTTTTTGACATGTGTGGTGATGCAAGA-AAT 689
Query 744 GATTTACATTTTGGATGCTAC-GTGTGGTTTGGTTTATGATCCCATTGATGGTACATGGG 802
|||||||||||||||| || | || |||||| | ||| || || | | ||| ||||
Sbjct 690 GATTTACATTTTGGATACT-CTGTTTGGTTTTGCTTACGAACCAAGACAAGGTTTATGGC 748
Query 803 AGTCAGG-GGAGCTTGGAA-CT-ACGTTGAAGTCTT-ACTGGTACAAGCCGTGTTGTGTG 858
||||| ||| |||||| || | |||||||| | | ||| | ||| | ||||||||
Sbjct 749 AGTCAATTGGA--TTGGAAACTCA-GTTGAAGT-TGCATTGG-A-AAGTCA-GTTGTGTG 801
Query 859 ATTGAGGATTTGTTGTATAGTTTTGATCCATACTGTCTTCAAGGTTC-TCCGATAAATG- 916
|| ||||||||| ||||| || ||||||| || || | || | || ||| ||
Sbjct 802 ATCGAGGATTTGCTGTATTGTATTGATCC-TAG-GT-TG---GGA-CATCAAATAG-TGG 853
Query 917 TGTATGATCCAAATGTCATGGTTTGGACTCCTATGATGGGTACGGGTATACGTGCTTTT- 975
| |||||||| |||| ||||||||| ||| ||| |||| | ||| || ||||
Sbjct 854 TATATGATCCGAATGAGTTGGTTTGGAGACCTGTGAAGGGTGC----ATA--TG-TTTTG 906
Query 976 CCTGATCTC-GATTACTT-TGAGTGTAAAATGGCGAATTTTGGTGGGAAGTTGATGGTTT 1033
|||||| || | ||| | | |||||||||||||||||||||| |||||| || || |||
Sbjct 907 CCTGATTTCTG-TTA-TAATCAGTGTAAAATGGCGAATTTTGGCGGGAAGCTGGTGATTT 964
Query 1034 TTGGTGCTACT-TATAA--CAA-CC--C--GGTTAC-A-GATACTTGGTG-CATAGAGAT 1082
| || ||| || | ||| | | || | |||| | ||| |||||| | |||||||
Sbjct 965 T-GG-GCT-CTGT-TAAATCCAGCCTGCATGGTTTGGAAGATGTTTGGTGTC-TAGAGAT 1019
Query 1083 GGCGTTG-ATAAAAGGTGAAACAGGTCCGATTTTGGGGATGATCGATTCAATGGTGCCTG 1141
|||||| | ||| | | || ||| ||||| ||||| | |||||||| ||| | ||
Sbjct 1020 CGCGTTGGAGAAACG-TCAAGGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTG 1078
Query 1142 TGCTTAGATCCGTGTACTCGCCTTACATTGATCTT-TGTCGCTCTGTTACATTTTGA 1197
|||||| ||| ||| ||||||||| ||||||||| | |||||||||||| ||||||
Sbjct 1079 TGCTTAAATCAGTGAACTCGCCTTCCATTGATCTGCT-TCGCTCTGTTACGTTTTGA 1134
> Ahg320730 jgi|Araly1|320730|fgenesh1_pm.C_scaffold_4000787
Length=1326
Score = 204 bits (110), Expect = 2e-51
Identities = 187/224 (83%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 86 AAGAAGACGATCATCAAGAAGAAGAAGTAGAGAATCATCCTCCGATTCCTCGACAAATCC 145
||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 206 AAGAAGACGATCAAGAAGATGAAGAAGTAGAGAATCATCCTCCGATTCCTCGAGTAATCC 265
Query 146 CACAAGCACTCATCAGAAGA-ACCGTCGCACTCATCAAGAGATGTCATTACCCGTCGCTA 204
||| || ||| ||| ||| | ||| ||||||||||| ||||||||||||||||||||||
Sbjct 266 CACCAGAACTAATC-GAAAACACCATCGCACTCATCCGGAGATGTCATTACCCGTCGCTA 324
Query 205 TCTCTCCTCTCTAAAGCCTTTCGT-ATCGTAATCTCTTC-GCCGGAACTCCACCAAACAC 262
|||||||||||||| ||||||||| | ||||||||||| | ||| ||| ||||| |
Sbjct 325 TCTCTCCTCTCTAACGCCTTTCGTCAA-GTAATCTCTTCAGA-GGATCTCTTCCAAATTC 382
Query 263 GCTCGAGCCTAAACCTAACCGAACCGGTTCTTTACGCTTTGATC 306
||||| || | | ||||||||||||||||| | ||||||
Sbjct 383 GCTCGCGCATCGGTTTGACCGAACCGGTTCTTTATACCTTGATC 426
> Ahg899437 jgi|Araly1|899437|Al_scaffold_0004_87
Length=1182
Score = 56.5 bits (30), Expect = 5e-07
Identities = 54/65 (83%), Gaps = 3/65 (5%)
Strand=Plus/Plus
Query 1 ATGGCTATAATCTCTGAAACTTCCGACGACGGCTCTCACGGTGGCG-T-ACCAAACAA-G 57
|||| | ||||||||||||||||||||||||||||| | || ||| | | |||| || |
Sbjct 1 ATGGTTTTAATCTCTGAAACTTCCGACGACGGCTCTAATGGCGGCAATCATCAAAAAAAG 60
Query 58 AAACC 62
|||||
Sbjct 61 AAACC 65
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54888043045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5