BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29830.1
Length=1189
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933437 jgi|Araly1|933437|scaffold_401425.1 1062 0.0
Ahg320744 jgi|Araly1|320744|fgenesh1_pm.C_scaffold_4000801 654 0.0
> Ahg933437 jgi|Araly1|933437|scaffold_401425.1
Length=1309
Score = 1062 bits (575), Expect = 0.0
Identities = 953/1128 (84%), Gaps = 55/1128 (5%)
Strand=Plus/Plus
Query 86 AACGAGAATCCTCAAGAAG-A--AGTAGAGAATCTTCCGATTCTTCTACAACTTCCAGA- 141
||||| ||||||||||||| | || ||||||||||||||||| || | |||| ||| |
Sbjct 177 AACGACAATCCTCAAGAAGTACTAGAAGAGAATCTTCCGATTCCTCAAGAACTCCCA-AT 235
Query 142 AGA-ACTCATCGCAAGCATCGTCGCACTCATCCCAAGATGTCATTACCCATCGCTATCCC 200
||| | |||||| ||||||||||| || |||||||||||||||||||| |||||||| |
Sbjct 236 AGATA-TCATCGTGAGCATCGTCGCTCTTATCCCAAGATGTCATTACCCGTCGCTATCTC 294
Query 201 TCGTCTCCAGAGCCTTTCGTCACTTAATCACTTCGCAGGAGCTCTACGTAGCACGCTCGA 260
|||||||||||||||||||||| ||||||||||||| || |||||| || | |||||||
Sbjct 295 TCGTCTCCAGAGCCTTTCGTCAAGTAATCACTTCGCATGAACTCTACCTAACGCGCTCGA 354
Query 261 ACCTCGGCTTCACCGAACCGGTTCTTTATGCCTTAATCGGATTCCAAGCGTATACTCGC- 319
||||||||||||||||||||||||||||||| || |||||||||| | |||||| || |
Sbjct 355 ACCTCGGCTTCACCGAACCGGTTCTTTATGCGTTCATCGGATTCCCACCGTATATTC-CT 413
Query 320 CCAAGCTGGTTCTTTCTTCGTCGGAGCAAC------TTCCCATTACAATTACACAGAATC 373
|||||||||||||||||||||||||||||| ||||| |||||||||| || ||||
Sbjct 414 CCAAGCTGGTTCTTTCTTCGTCGGAGCAACTTAGGATTCCCTTTACAATTACGCATAATC 473
Query 374 CGTTCACTTCCTCCAATGTTAT-CTGGTGCAGCTGTGGTCACAAT-AGACTACAAGATGT 431
|||||||||||||||||||| | ||| || ||||||||||| || || |||||||| |
Sbjct 474 CGTTCACTTCCTCCAATGTT-TCCTGCAGCTGCTGTGGTCACCATCGGA-TACAAGATCT 531
Query 432 A-TGTAATGGGTGGTT-GCA-T-CGGC-TATAATCATC--CTGCATCATCGAATGTAATT 484
| | |||||||||||| | | | | | ||| ||| | | | ||||| ||| ||
Sbjct 532 ACT-TAATGGGTGGTTATAATTCCCTCGTCGAAT-ATCGAC-CCGT-ATCGACTGTGGTT 587
Query 485 GTCATCGACTGCAGATTCCATACTTGGAAG-TATCTCCCGGATATGAAAAGGGCTCGTTG 543
|||||||| |||||||||||||| ||| | ||||||| | ||||| |||||||||||
Sbjct 588 GTCATCGATTGCAGATTCCATACGTGG-GGCTATCTCCAGAATATGCGAAGGGCTCGTTA 646
Query 544 CCGTGCAGCCA-CCGGAATAATTGACGGAAGGATTTATGTGATCGGAGGCTGCAAGAAAC 602
|| ||||| || ||||| || ||||||||| ||||| || ||||||||||||||||||
Sbjct 647 CCATGCAG-CAGCCGGAGTATTTGACGGAAACATTTACGTAATCGGAGGCTGCAAGAAA- 704
Query 603 A-AGATGCTGATTGGGTTGAAGTGTTTGATGTGACGACTCAGAGTTGGGAAACTGTGCCT 661
| ||||| ||||||||| |||||||| ||||||||||| ||| ||||| ||||||||||
Sbjct 705 AGAGATGATGATTGGGTCGAAGTGTTCAATGTGACGACTGAGACTTGGGCAACTGTGCCT 764
Query 662 AG-CGAATGCCCT-AACGATGCTAATGAGAATGGAGAGTTTATTACGTATGTGGTGATGC 719
|| | |||||||| || ||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 765 AGTC-AATGCCCTGAA-GATGCTAGTGAGAATGGAGAGTTTATTACATATGTGGTGATGC 822
Query 720 AGGGGAGGCTTTTCATTTTGGATCTTGAGTGTTGTTTTTCTTACGAACCAGTACAAGGTT 779
|||||||| |||||| |||||| |||| | ||||||| |||||||||||||||||||||
Sbjct 823 AGGGGAGGATTTTCACTTTGGAGCTTGGGGGTTGTTTGGCTTACGAACCAGTACAAGGTT 882
Query 780 TATGGGAGTCAT-GGGATG-ATGGAAGTGAGTTGATGAGATTTTGGCACTCGTCGTCGTC 837
||||| |||||| |||| | || ||||||||||||||||||||||||| ||||||||||
Sbjct 883 TATGGCAGTCATGGGGA-GTAT-TAAGTGAGTTGATGAGATTTTGGCACCCGTCGTCGTC 940
Query 838 TTGTGTGGTTGGAGATTTGTTGTATGCACTTGATCTTACGTGTGCTCTTGAACATCCAAT 897
||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||
Sbjct 941 TTGTGTGGTTGGAGATTTGTTGTATGCACTTGATCTTACGTGTTCTCGTGGACATCCGAT 1000
Query 898 AGTGGTATATTATCCGAATGAATTGGTTTGGAGACCTGTG-ATGGGTGTAGATACTGCTC 956
|||||||||||||||||||||||||||||||||||||||| | ||||||| || || |
Sbjct 1001 AGTGGTATATTATCCGAATGAATTGGTTTGGAGACCTGTGCA-GGGTGTATATTCTTATA 1059
Query 957 ATTTGCCTATTCTCACTGAATA-TACGTCTACGTTGGCGAATTTTGATGGGAAGTTGGTG 1015
||||||||||||||| | | || | ||||| | |||||||||||| |||||||||||||
Sbjct 1060 ATTTGCCTATTCTCAGTTA-TAATTGGTCTAAGATGGCGAATTTTGGTGGGAAGTTGGTG 1118
Query 1016 ATTTTGGGCGGGGGCGACTGTTCTGAGTCTTCTTCCGAAATTTGGTGCGTAGAGATTGCG 1075
|||||| | || ||| | | || || | || | || ||||||||| |||||||||||
Sbjct 1119 ATTTTGAGTGGTGGCTATTCTT-TGTGG-TT-TAAAGATATTTGGTGCATAGAGATTGCG 1175
Query 1076 TTGGAAACACGTCAAGGAGATCAGATTTGGGGGGTGGTTAAATCAGTCTCGATTGTGTCA 1135
||||||| |||||||||| ||||||||||||||| |||| ||||| ||||| ||||||
Sbjct 1176 TTGGAAATACGTCAAGGAAATCAGATTTGGGGGGAGGTTGAATCAATCTCGCTTGTGTTT 1235
Query 1136 AGGGACTTGCCGATGAG-GCATGTC-ATTGAGCTTTGTCGAACTGTTA 1181
|| ||| || |||| | || | || ||||||||||||||||||||||
Sbjct 1236 AGAGACGTGATGATG-GCGCCT-TCCATTGAGCTTTGTCGAACTGTTA 1281
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 74 GAAGATAATCAAAACGAGAATCCTCAAGAAG 104
|||||||||||||||||||||||||||||||
Sbjct 90 GAAGATAATCAAAACGAGAATCCTCAAGAAG 120
> Ahg320744 jgi|Araly1|320744|fgenesh1_pm.C_scaffold_4000801
Length=1158
Score = 654 bits (354), Expect = 0.0
Identities = 552/644 (86%), Gaps = 28/644 (4%)
Strand=Plus/Plus
Query 346 CAACTTCCCATTACAATTACACAGAATCCGTTCACTTCCTCCA-ATGTTAT-CTGGTGCA 403
|||| |||| |||||||||| |||||||||| |||||| | || || || | |||| |||
Sbjct 351 CAACATCCCTTTACAATTACGCAGAATCCGTCCACTTCGT-CATATCTT-TCCTGGAGCA 408
Query 404 GCTGTGGTCACAATAGACTACAAGATGTATGTAATGGGTGGT-----T-GCATCG-G-CT 455
|||||||||||||| || |||||||||||||||||||||||| | ||||| | |
Sbjct 409 GCTGTGGTCACAATCGAATACAAGATGTATGTAATGGGTGGTACCAATCCCATCGAGTTT 468
Query 456 A-TAATCATCCTGCATCATCGAATGTAATTGTCATCGACTGCAGATTCCATACTTGGAAG 514
| |||| | |||| | ||||| ||| |||||||||||||||||||||||||| ||| |
Sbjct 469 ACTAATAAACCTG--T-ATCGACTGTGATTGTCATCGACTGCAGATTCCATACGTGG-GG 524
Query 515 -TATCTCCCGGATATGAAAAGGGCTCGTTGCCGTGCAGCCA-CCGGAATAATTGACGGAA 572
|||||||||||||| |||||||||||| || ||||| || ||||| | ||||||||||
Sbjct 525 CAATCTCCCGGATATGCAAAGGGCTCGTTACCATGCAG-CAGCCGGAGTCATTGACGGAA 583
Query 573 GGATTTATGTGATCGGAGGCTGCAAGAAACAAGATGCTGATTGGGTTGAAGTGTTTGATG 632
||||| || |||||||| |||||||||||||||| ||| ||||| |||||||| |||
Sbjct 584 ACATTTACGTAATCGGAGGTTGCAAGAAACAAGATGATGACTGGGTCGAAGTGTTCAATG 643
Query 633 TGACGACTCAGAGTTGGGAAACTGTGCCTAG-CGAATGCCCT-AACGATGCTAATGAGAA 690
|||||||| ||| ||||| |||||||||||| | |||||||| || ||||||| ||||||
Sbjct 644 TGACGACTGAGACTTGGGCAACTGTGCCTAGTC-AATGCCCTGAA-GATGCTAGTGAGAA 701
Query 691 TGGAGAGTTTATTACGTATGTGGTGATGCAGGGGAGGCTTTTCATTTTGGA-TCTTGAGT 749
|||||||||| |||| ||||||||||||||||||||| |||||| |||||| | ||| |
Sbjct 702 TGGAGAGTTTGTTACATATGTGGTGATGCAGGGGAGGATTTTCACTTTGGAGT-TTGGGG 760
Query 750 GTTGTTTTTCTTACGAACCAGTACAAGGTTTATGGGAGTCATGGGATGATGGAAGTGAGT 809
| |||||| |||||||||||| ||||||||||||| ||||||||| || || ||||||||
Sbjct 761 GCTGTTTTGCTTACGAACCAGGACAAGGTTTATGGCAGTCATGGGGTGTTGAAAGTGAGT 820
Query 810 TGATGAGATTTTGGCACTCGTCGTCGTCTTGTGTGGTTGGAGATTTGTTGTATGCACTTG 869
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TGATGAGATTTTGGAACTCGTCGTCGTCTTGTGTGGTTGGAGATTTGTTGTATGCACTTG 880
Query 870 ATCTTACGTGTGCTCTTGAACATCCAATAGTGGTATAT-T-ATCCGAATGAATTGGTTTG 927
|||| |||||| |||||| | |||| |||||||||||| | |||||||||||||||||||
Sbjct 881 ATCTGACGTGTACTCTTGGATATCCGATAGTGGTATATATTATCCGAATGAATTGGTTTG 940
Query 928 GAGACCTGTGATGGGTGTAGATACTGCTCATTTGCCTATTCTCA 971
| |||||||| |||||| | || || | |||||||||||||||
Sbjct 941 GGGACCTGTGCTGGGTGGATATTCTTATAATTTGCCTATTCTCA 984
Score = 267 bits (144), Expect = 2e-70
Identities = 184/204 (90%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 99 AAGAAGAAGTAGAGAATCTTCCGATTCTTCTACAACTTCCAGAAGAACTCATCGCAAGCA 158
|||||||||||||||||||||||||||||||| ||||||||||||| ||| ||| ||| |
Sbjct 140 AAGAAGAAGTAGAGAATCTTCCGATTCTTCTAGAACTTCCAGAAGATCTCTTCGAAAGAA 199
Query 159 TCGTCGCACTCATCCCAAGATGTCATTACCCATCGCTATCCCTCGTCTCCAGAGCCTTTC 218
|| |||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 200 TCATCGCACACATCCCAAGATCTCATTACCCGTCGCTATCTCTCGTCTCCAGAGCCTTTC 259
Query 219 GTCACTTAATCACTTCGCAGGAGCTCTACGTAGCACGCTCGAACCTCGGCTTCACCGAAC 278
||||| ||||||||||||| | |||| |||| | |||||| |||||||||||||||||
Sbjct 260 GTCACGTAATCACTTCGCATAAACTCTTCGTAACGCGCTCGCTCCTCGGCTTCACCGAAC 319
Query 279 CGGTTCTTTATGCCTTAATCGGAT 302
|||||||||||||||||||| |||
Sbjct 320 CGGTTCTTTATGCCTTAATCAGAT 343
Score = 161 bits (87), Expect = 9e-39
Identities = 120/136 (88%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 1055 ATTTGGTGCGTAGAGATTGCGTTGGAAACACGTCAAGGAGATCAGATTTGGGGGGTGGTT 1114
||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 1024 ATTTGGTGCATAGAGATTGCGTTGGAAACACGTCAAGAAAATCAGATTTGGGGGGTGGTT 1083
Query 1115 AAATCAGTCTCGATTGTGTCAAGGGACTTGCCGATGAGGCATGT-CATTGAGCTTTGTCG 1173
||||| ||||| |||||| |||||| | ||||| || | | |||||||||||||||
Sbjct 1084 GAATCAATCTCGCTTGTGTTTAGGGACGAGATGATGATGCCT-TCCATTGAGCTTTGTCG 1142
Query 1174 AACTGTTATGGTTTGA 1189
||||||||||||||||
Sbjct 1143 AACTGTTATGGTTTGA 1158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44375075388
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5