BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29880.1 Length=1131 Score E Sequences producing significant alignments: (Bits) Value Ahg936877 jgi|Araly1|936877|scaffold_501068.1 385 5e-106 Ahg924889 jgi|Araly1|924889|scaffold_200450.1 303 1e-81 > Ahg936877 jgi|Araly1|936877|scaffold_501068.1 Length=283 Score = 385 bits (208), Expect = 5e-106 Identities = 255/278 (92%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 523 GATAATGTGAACCATATGGAGATTAATGACGACGAGGTAAATGAAACACTTCCTAAAGAA 582 ||| |||||||| ||||||||||||||||| |||||||||||||||| |||| |||||| Sbjct 6 GATGATGTGAACTATATGGAGATTAATGACAACGAGGTAAATGAAACTTTTCCCAAAGAA 65 Query 583 AAGCTGCCTACTAGGAAAAGATCTAAAACTAATCGTAACGGAGATCGGTCAGATTCAATA 642 ||| ||||||||||||||||||||||| | ||| |||| ||||||| ||||||||||| Sbjct 66 AAGTTGCCTACTAGGAAAAGATCTAAACCAAATAGTAATGGAGATCCATCAGATTCAATT 125 Query 643 AATCATGGTGAGTCTTCAGAGAAGGTGCTATCTGAAATGATTGGAGTTGGCACTAACATC 702 ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 126 AATCATGGTGAGTCTTCAGAGAATGTGCTAACTGAAATGATTGGAGTTGGCACTAACATC 185 Query 703 ATAAATCTTATTCAACAAAGAGAAGAAAGACATCAAAGAGAAGTTGAGTTTAGGGAAACT 762 |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 186 ATAAATCTTATTCAACAAAGAGAAGAAAGATATCAAAGAGATGTTGAGTTTAGGGAAACT 245 Query 763 GAGaaaaaaaa-GAACAATGTTTGGGATGCTATCAAGG 799 |||||||||| ||| |||| ||||||||| ||||||| Sbjct 246 CAGAAAAAAAAAGAATAATGGTTGGGATGCCATCAAGG 283 > Ahg924889 jgi|Araly1|924889|scaffold_200450.1 Length=259 Score = 303 bits (164), Expect = 1e-81 Identities = 194/207 (94%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 1 ATGGAATCAGGAGA-C---C--AGGCAGGAGAGACGTCaaaaaagaaaaagaaaGGCCCA 54 |||||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 21 ATGGAATCAGGAGACCAGGCAGAGGCAGGAGAGACGTCAAAAAAGAAAAAGAAAGGCCCA 80 Query 55 TATATGTCATGGTCAGATCAAGAATGTTATGAGTTAACGGCTATATTAGTTGATGCTATC 114 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 81 TATATGTCATGGTCAGATCAAGAATGTTATGAGTTAATGGCTATATTAGTTGATGCTATC 140 Query 115 AAACGAGGCTGGCGTGACAAAAATGGTACCATAAGCAAAACTACGGTAGAGAGAAAA-AT 173 ||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||| || Sbjct 141 AAACGGGGCTGGCGTGAAAAAAAAGGTACCATAAGCAAAACTACGGTAGAGA-AAAAGAT 199 Query 174 ACTACCTCTTCTAAATAAAAAGTTTAA 200 |||||||||||||||||||||| |||| Sbjct 200 ACTACCTCTTCTAAATAAAAAGCTTAA 226 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42163946202 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5