BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G29880.1

Length=1131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg936877 jgi|Araly1|936877|scaffold_501068.1                        385    5e-106
  Ahg924889 jgi|Araly1|924889|scaffold_200450.1                        303    1e-81 


> Ahg936877 jgi|Araly1|936877|scaffold_501068.1
Length=283

 Score =  385 bits (208),  Expect = 5e-106
 Identities = 255/278 (92%), Gaps = 1/278 (0%)
 Strand=Plus/Plus

Query  523  GATAATGTGAACCATATGGAGATTAATGACGACGAGGTAAATGAAACACTTCCTAAAGAA  582
            ||| |||||||| ||||||||||||||||| ||||||||||||||||  |||| ||||||
Sbjct  6    GATGATGTGAACTATATGGAGATTAATGACAACGAGGTAAATGAAACTTTTCCCAAAGAA  65

Query  583  AAGCTGCCTACTAGGAAAAGATCTAAAACTAATCGTAACGGAGATCGGTCAGATTCAATA  642
            ||| ||||||||||||||||||||||| | ||| |||| |||||||  ||||||||||| 
Sbjct  66   AAGTTGCCTACTAGGAAAAGATCTAAACCAAATAGTAATGGAGATCCATCAGATTCAATT  125

Query  643  AATCATGGTGAGTCTTCAGAGAAGGTGCTATCTGAAATGATTGGAGTTGGCACTAACATC  702
            ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct  126  AATCATGGTGAGTCTTCAGAGAATGTGCTAACTGAAATGATTGGAGTTGGCACTAACATC  185

Query  703  ATAAATCTTATTCAACAAAGAGAAGAAAGACATCAAAGAGAAGTTGAGTTTAGGGAAACT  762
            |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct  186  ATAAATCTTATTCAACAAAGAGAAGAAAGATATCAAAGAGATGTTGAGTTTAGGGAAACT  245

Query  763  GAGaaaaaaaa-GAACAATGTTTGGGATGCTATCAAGG  799
             |||||||||| ||| |||| ||||||||| |||||||
Sbjct  246  CAGAAAAAAAAAGAATAATGGTTGGGATGCCATCAAGG  283


> Ahg924889 jgi|Araly1|924889|scaffold_200450.1
Length=259

 Score =  303 bits (164),  Expect = 1e-81
 Identities = 194/207 (94%), Gaps = 8/207 (4%)
 Strand=Plus/Plus

Query  1    ATGGAATCAGGAGA-C---C--AGGCAGGAGAGACGTCaaaaaagaaaaagaaaGGCCCA  54
            |||||||||||||| |   |  ||||||||||||||||||||||||||||||||||||||
Sbjct  21   ATGGAATCAGGAGACCAGGCAGAGGCAGGAGAGACGTCAAAAAAGAAAAAGAAAGGCCCA  80

Query  55   TATATGTCATGGTCAGATCAAGAATGTTATGAGTTAACGGCTATATTAGTTGATGCTATC  114
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  81   TATATGTCATGGTCAGATCAAGAATGTTATGAGTTAATGGCTATATTAGTTGATGCTATC  140

Query  115  AAACGAGGCTGGCGTGACAAAAATGGTACCATAAGCAAAACTACGGTAGAGAGAAAA-AT  173
            ||||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||| ||
Sbjct  141  AAACGGGGCTGGCGTGAAAAAAAAGGTACCATAAGCAAAACTACGGTAGAGA-AAAAGAT  199

Query  174  ACTACCTCTTCTAAATAAAAAGTTTAA  200
            |||||||||||||||||||||| ||||
Sbjct  200  ACTACCTCTTCTAAATAAAAAGCTTAA  226



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42163946202


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5