BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29890.3
Length=3074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900758 jgi|Araly1|900758|Al_scaffold_0004_1408 3832 0.0
> Ahg900758 jgi|Araly1|900758|Al_scaffold_0004_1408
Length=2736
Score = 3832 bits (2075), Expect = 0.0
Identities = 2332/2459 (95%), Gaps = 6/2459 (0%)
Strand=Plus/Plus
Query 151 ATGTCTAGGCTAAGTAAAGACATTGATTCAGCGTTTCAAGGTGTTGGAACCAAAAGTGGC 210
||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1 ATGTCTAGGCTAAACAAAGACATTGATTCAGCATTTCACGGTGTTGGAACTAAAAGTGGC 60
Query 211 TTGGAGATTTGGTGCGTTTATAATAAACAGCTTATTTCTATC-CCTAAGTCTTCTTTTGG 269
||||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 61 TTGGAGATTTGGTGCATTTATAATAATCAGCTTATTTCTATCTCC-AAGTCTTCTTTTGG 119
Query 270 AAAATTTCACTCTGGAAATGCATACCTTGTTCTTAGAACGTTTTTGCGGAAGATCGAATC 329
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 120 AAAATTTCACTCTGGAAATGCATATCTTGTTCTCAGAACGTTTTTGCGGAAGATCGAATC 179
Query 330 TCCCCAGTATGACATTCACTATTGGCTAGGAATTGATGCAAATGAGGTGGATTCAATTTT 389
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 180 TCCCCAGTATGATATTCACTATTGGCTAGGAAATGATGCAAATGAGGTGGATTTAGTTTT 239
Query 390 GGCATCAGACAAAGCATTAGATTTAGATGCCGCACTTGGATGTTGTACGGTGCAATACCG 449
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 240 GGCATCAGACAAAGCATTAGAGTTAGATGCAGCACTTGGATGTTGTACGGTGCAATACCG 299
Query 450 TGAAGTTCAAGGTCAAGAGACTGAGAAGTTTCTCTCTTACTTCAAACCTTGTATTATACC 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGAAGTTCAAGGTCAAGAGACTGAGAAGTTTCTCTCTTACTTCAAACCTTGTATTATACC 359
Query 510 TGTTGAAGGCAAGTATTCCCCAAAAACTGGAATTGCT-GGCGAGACATACCAAGTCACCT 568
|||||||||||||| ||| |||||||||||| ||| | ||||||||||||||||| | |
Sbjct 360 TGTTGAAGGCAAGTTTTCACCAAAAACTGGA-TTGGTTGGCGAGACATACCAAGTTATTT 418
Query 569 TGCTAAGGTGCAAGGGAGATCATGTTGTTCGTGTTAAAGAGGTGCCTTTTCTTCGGTCAT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGCTAAGGTGCAAGGGAGATCATGTTGTTCGTGTTAAAGAGGTGCCTTTTCTTCGGTCAT 478
Query 629 CACTGAACCATGACGATGTCTTCATTCTGGATACTGCGTCAAAGGTTTTTCTTTTTGCTG 688
||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||
Sbjct 479 CACTGAACCATGATGATGTGTTCATTCTTGATACTGCATCAAAAGTTTTTCTCTTTGCTG 538
Query 689 GTTGTAACTCAAGCACTCAGGAAAAAGCTAAAGCGATGGAGGTTGTGGAATATATAAAGG 748
|||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 539 GTTGCAACTCAAGCACTCAGGAAAAAGCTAAAGCCCTGGAGGTTGTGGAGTATATAAAGG 598
Query 749 ATAACAAGCATGACGGAAGATGTGAGGTCGCGACTATCGAGGATGGAAAATTTTCAGGTG 808
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 599 ATAACAAGCATGACGGAAGATGTGAGGTGGCGACTATCGAGGATGGAAAATTTTCAGGTG 658
Query 809 ATTCAGATGCTGGGGAATTCTGGTCTTTCTTTGGTGGTTATGCTCCCATTCCCAAGCTTT 868
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATTCAGATTCTGGTGAATTCTGGTCTTTCTTTGGTGGTTATGCTCCCATTCCCAAGCTTC 718
Query 869 CATCTTCTACCACCCAAGAACAAACTCAGACTCCATGTGCAGAATTGTTCTGGATAGATA 928
||||||| |||||||||||||| || |||||| ||| |||||||||||||||||||||||
Sbjct 719 CATCTTCAACCACCCAAGAACAGACGCAGACTACATATGCAGAATTGTTCTGGATAGATA 778
Query 929 CTAAGGGAAATCTACATCCAACTGGAACAAGTTCTTTGGACAAGGACATGCTTGAGAAGA 988
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 779 CTAAGGGAAATCTACATCCAACTGGAACAAGTTCTTTGGACAAGGACATGCTTGAAAAAA 838
Query 989 ACAAATGCTACATGCTGGACTGTCACAGTGAAGTATTTGTTTGGATGGGAAGAAACACAT 1048
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 839 ACAAATGCTACATGCTGGACTGTTACAGTGAAGTATTTGTTTGGATGGGAAGAGCCACAT 898
Query 1049 CACTTACAGAAAGGAAGACATCCATTTCTTCCTCAGAAGAATTTCTACGAAAGGAGGGAC 1108
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 CACTTACAGAAAGAAAGACATCCATTTCATCCTCAGAAGAATTTCTACGAAAGGAGGGAC 958
Query 1109 GCTCGACGACCACAAGTTTAGTACTTCTAACAGAAGGACTAGAAAATGCCAGATTCAGGT 1168
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 959 GCTGGACAACCACAAGTTTAGTACTTCTAACGGAAGGACTAGAAAATGCCAGATTCAGGT 1018
Query 1169 CATTTTTTAACAAATGGCCTCAGACCGTGGAGTCTAGCCTCTACAATGAAGGTCGAGAAA 1228
||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1019 CATTTTTTAGTAAGTGGCCTCAGACCGTAGAGTCTAGCCTTTACAATGAAGGTCGAGAAA 1078
Query 1229 AAGTGGCTGCGTTGTTCAAACAAAAAGGATATGACGTTGAGGAGCTTCCTGATGAAGAAG 1288
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1079 AAGTGGCAGCGATGTTCAAACAAAAAGGATATGACGTTGATGAGCTTCCTGATGAAGAAG 1138
Query 1289 ATGACCCTCTCTACACAAACTGCCGAGACAACCTCAAGGTTTGGCGTGTAGATGGTGATG 1348
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1139 ATGAACCTCTCTACACAAACTGCCGAGACACCCTCAAGGTTTGGCGTGTAGATGGTGATG 1198
Query 1349 ACGTCTCGCTTCTCTCTATTCCTGACCAGACAAAGCTATTCACCGGCGATTGCTATCTTG 1408
| ||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 1199 AGGTCTCTATTCTCTCCATTCCTGACCAGACAAAGCTATTCAGCGGCGATTGTTATATTG 1258
Query 1409 TGCAGTATAAATATACTTATAAAGAAAGAACCGAACATCTTTTATATGTATGGATCGGTT 1468
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGCAGTACAAATATACTTATAATGAAAGAACCGAACATCTTTTATATGTATGGATCGGTT 1318
Query 1469 GTGAAAGCATACAGCAAGATAGAGCTGATGCCATAACCAATGCTAGTGCCATTGTTGGTA 1528
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1319 GTGAAAGCATACAGCAAGATAGAGCTGATGCCATAACCAATGCAAGTGCCATTGTTGGTT 1378
Query 1529 CAACCAAGGGTGAATCTGTACTGTGTCATATATATCAGGGAAACGAACCTTCTCGGTTTT 1588
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 1379 CAACCAAGGGTGAATCTGTAATGTGTCATATATATCAGGGAGACGAACCTTCTCGTTTTT 1438
Query 1589 TTCCAATGTTCCAGTCACTGGTTGTTTTTAAGGGCGGTTTGAGTAGACGGTACAAAGTGC 1648
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1439 TTCCAATGTTCCAGTCGCTGGTTGTTTTTAAAGGCGGTTTGAGTAGACGGTACAAAATGT 1498
Query 1649 TTCTAGCAGAGAAGGAAAA-GATAGGGGAAGAATATAATGAGAACAAGGCTTCTCTTTTC 1707
||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||
Sbjct 1499 TTCTAGCAGAGAAGGAAAACGAAATGG-AAGAATATAATGAGAACAAGGCTTCTCTTTTC 1557
Query 1708 CGTGTTGTAGGAACAAGCCCAAGAAACATGCAAGCAATCCAAGTGAATCTAGTTGCAACC 1767
||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1558 CGTGTTGAAGGAACAAGCCCAAGGAACATGCAAGCAATCCAAGTTAATCTAGTGGCAACC 1617
Query 1768 TCCTTGAACTCATCCTACTCTTACATTTTACAATATGGAGCTTCTGCCTTCACTTGGATT 1827
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1618 TCCTTGAACTCATCCTACTCGTACATTTTACAATATGGAGCTTCTGCCTTCACATGGATT 1677
Query 1828 GGGAAACTTTCATCAGACTCTGATCATGAAGTTCTTGACAGAATGCTATATTTCCTTGAT 1887
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1678 GGAAAACTTTCATCAGACTCTGATCATGATGTTCTTGACAGAATGCTATATTTCCTTGAT 1737
Query 1888 ACATCTTGTCAACCTATATACATCAGGGAAGGAAATGAAACAGACACATTTTGGAATTTG 1947
|||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1738 ACATCTTGTCAACCGATATACATCAGGGAAGGAAATGAACCAGACACATTTTGGGATTTG 1797
Query 1948 CTTGGTGGTAAGTCAGAGTACCCAAAAGAAAAGGAAATGAGAAAACAAATAGAAGAACCA 2007
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1798 CTTGGTGGTAAGTCAGAGTACCCAAAAGAAAGGGAAATGAGGAAACAAATAGAAGAACCA 1857
Query 2008 CATTTATTTACATGTTCATGCAGTTCAGGTAATGATGTACTCAAGGTGAAAGAAATATAC 2067
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 CATCTATTTACATGTTCCTGCAGTTCAGGTAATGATGTACTCAAGGTGAAAGAAATATAC 1917
Query 2068 AATTTTGTGCAAGATGATTTAACTACTGAAGATGTATTTCTATTGGACTGCCAAAGTGAA 2127
||||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 1918 AATTTCGTGCAAGACGATTTAACCACTGAAGATGTATTACTGTTGGACTGCCAAAGTGAA 1977
Query 2128 GTATATGTCTGGATTGGATCAAACTCAAACATAAAGTCGAAGGAAGAAGCTCTTACTCTT 2187
|||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 1978 GTATATGTTTGGATTGGATTAAACTCAAACATAAAGTCCAAGCAAGAAGCTCTTACTCTT 2037
Query 2188 GGTCTGAAATTCCTAGAGATGGATATACTGGAAGAAGGTCTAACCATGAGGACTCCTGTA 2247
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct 2038 GGTCTGAAATTCCTAGAGATGGATATTCTGGAAGAAGGTCTAACCGTGAGGACTCCTCTA 2097
Query 2248 TATGTTGTCACAGAAGGCCACGAGCCACCATTTTTCACCCGTTTCTTTGAGTGGGTTCCT 2307
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2098 TATGTTGTCACAGAAGGCCACGAGCCACCATTCTTCACCCGTTTCTTTGAGTGGGTTCCT 2157
Query 2308 GAAAAGGCAAACATGCATGGTAATTCATTTGAAAGGAAGCTTGCTAGTTTGAAAGGAAAG 2367
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2158 GAAAAGGCAAACATGCATGGTAATTCATTTGAAAGGAAACTTGCTAGTCTGAAAGGAAAG 2217
Query 2368 AAGACAAGCACTAAGAGATCTAGTGGAAGCCAGTATAGATCACAGTCAAAGGATAATGCA 2427
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 2218 AAGACAAGCACTAAGAGATCTAGTGGAAGCCAGTGGAGACCACAGTCGAAGGATAATGCA 2277
Query 2428 TCACGTGATTTACAAAGTCGATCTGTGAGCTCAAACGGATCGGAGCGAGGAGTATCACCT 2487
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2278 TCACGTGATTTACAAAGTCGATCTGTGAGCTTAAACGGATCGGAGCGAGGAGTATCACCT 2337
Query 2488 TGCTCCAGCGAAAAGCTTTTGAGTTTGAGCTCTGCAGAAGACATGACAAACAGCAGTAAC 2547
||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||| |||
Sbjct 2338 TGCTCCAGCGAAAAGCTTTCGAGATTGAGCTCTACAGAAGACATGACAAGCAGCAGCAAC 2397
Query 2548 TCAACTCCAGTTGTCAAAAAGCTTTTCTCAGAATCTCTTTTAGTGGATCCTAATGATGG 2606
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2398 TCAACTCCAGTTGTCAAAAAGCTTTTCTCAGAATCTCTTTTAGTGGATCCTAGTGATGG 2456
Score = 414 bits (224), Expect = 2e-114
Identities = 261/279 (94%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 2675 TGGCGAGACAAGAGTCGAGTTCCAAGTCGGACATTTCTAAACAGAAGCCACG-CGTTGGA 2733
|||||||||||||||| || |||||||||||||||||||| || || ||| | || ||||
Sbjct 2459 TGGCGAGACAAGAGTCAAGCTCCAAGTCGGACATTTCTAATCAAAATCCA-GTCGGTGGA 2517
Query 2734 ATCAATAGCGATCTTAGTAGTCTAGAGTCACTTGCATATTCATATGAACAGCTCAGAGTT 2793
|||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 2518 ATCAATCGCGATCTTAGTAGTCTAGAGTCGCTTACATATTCATATAAACAGCTCAGAGTT 2577
Query 2794 GATTCTCAGAAGCCAGTGACGGATATAGATGCAACAAGAAGAGAGGCGTACTTAACAGAG 2853
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2578 GATTCTCAGGAGCCAGTGTCAAATATAGATGCAACAAGAAGAGAGGCGTACTTAACAGAG 2637
Query 2854 AAAGAGTTTGAAGAGAGATTTGGAATGGCGAAATCTGAGTTCTATGCACTTCCAAAGTGG 2913
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2638 AAAGAGTTTGAAGAGAGATTTGGAATGGCGAAATCTGAGTTCTATGCACTTCCAAAATGG 2697
Query 2914 AAACAGAATAAACTCAAAATATCTCTTCATCTTTTCTAA 2952
|||||||||||||| ||||||||||||||||||||||||
Sbjct 2698 AAACAGAATAAACTTAAAATATCTCTTCATCTTTTCTAA 2736
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116099066760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5