BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29900.1
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481900 jgi|Araly1|481900|fgenesh2_kg.4__960__AT2G29900.1 2145 0.0
> Ahg481900 jgi|Araly1|481900|fgenesh2_kg.4__960__AT2G29900.1
Length=1338
Score = 2145 bits (1161), Expect = 0.0
Identities = 1282/1340 (96%), Gaps = 10/1340 (1%)
Strand=Plus/Plus
Query 31 TTCATCATCTTCATCGAATTTGTCAATTTGACTTGCCAAAGCTGAAATCTTTGAGTACCC 90
||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1 TTCATCATCCTCTTCGAATTTGTCAATTTGACTTGCCAAAACTGAAATCTTTGAGTACCC 60
Query 91 AATGGATCGAAATCAAAGACCCAGAAGCATTTTGGATTCATTAGGTGAAGAACTCATCGC 150
|||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 61 AATGGATCGAAACCAAAGACCCAGAAGCCTATTGGATTCATTAGGTGAAGAACTCATCGC 120
Query 151 AATCCTCACACCTGTCTCGATTTGTATGTTCACCGTTGTTCTTCTGGTCTGTATCCTAAA 210
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 AATCCTCACACCTGTCTCGATTTGTATGTTCACCGTTGTTCTTCTTGTCTGTATCCTAAA 180
Query 211 CTCCGACCCTTCTTCTTCCTCCGCTTCTTTCTCCTCTATAGCCACCGCAGCTTACTCTGA 270
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||
Sbjct 181 CTCCGACCCTTCTTCTTCCTCCGCTTCTTTCTCCTCCATAGCCACCGCAGCTTACGCAGA 240
Query 271 GAGCGATTCAGATTCCTCATGGGACAAATTCGTAGGTGCCCTTTTGAATTCTGTCGTCTT 330
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 GAGCGATTCAGATTCCTCATGGGACAAATTCGTCGGTGCCCTTTTGAATTCTGTCGTCTT 300
Query 331 CGTCGCTGCAATCACTGTTGCAACATTTGTTCTCGTCCTTCTCTTTTATCTCCGATGTGT 390
||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 301 CGTCGCTGCGATCACTGTTGCAACATTTGTTCTCGTGCTGCTCTTTTATCTCAGATGTGT 360
Query 391 TAAATTCTTGAAATTCTACATGGGTTTCTCAGCTTTTATCGTTTTAGGGAACTTAGGTGG 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TAAATTCTTGAAATTCTACATGGGTTTCTCAGCTTTTATCGTTTTAGGGAACTTAGGTGG 420
Query 451 AGAAATCTTAGTTTTATTGATAGATCGATTTAGATTCCCGATTGATTCTATCACGTTTTT 510
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 421 AGAAATCTTAGTTTTATTGATCGATCGATTTAGATTCCCGATTGATTCCATCACGTTTCT 480
Query 511 GATACTTCTCTTCAATTTCTCCGTCGTTGGTGTTTTCGCTGTGTTCATGTCGAAGTTTTC 570
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATACTTCTTTTCAATTTCTCTGTCGTTGGTGTTTTCGCTGTGTTCATGTCGAAGTTTTC 540
Query 571 GATTTTGATCACTCAAGGTTACTTGGTTTGGATTGGTGTTTTAGTTGCTTACTTCTTCAC 630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GATTTTGATCACTCAAGGTTACTTGGTTTGGATTGGTGTTTTAGTTGCTTACTTCTTCAC 600
Query 631 GTTGTTACCTGAATGGACTACTTGGGTTCTTCTCGTAGCTTTGGCACTTTATGACATTGC 690
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTATTACCTGAATGGACTACTTGGGTTCTTCTCGTAGCTTTGGCACTTTATGACATTGC 660
Query 691 TGCTGTTCTTTTACCTGTTGGTCCATTACGTCTTCTTGTTGAAATGGCTATATCTAGAGA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TGCTGTTCTTTTACCTGTTGGTCCATTACGTCTTCTTGTTGAAATGGCTATATCTAGAGA 720
Query 751 CGAAGACATCCCGGCTTTGGTTTACGAAGCACGGCCTGTGATCCGAAATGATTCCCGTTC 810
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 CGAAGATATCCCGGCTTTGGTTTACGAAGCACGGCCTGTGATTCGAAATGATTCCCGTTT 780
Query 811 GGTTCAGAGAAGAGTTTGGAGAGAACAAAGATCTA--GCC----AGAACAACGCTAATCG 864
|||||||||||||||||||||||||| |||||| | | | ||||| ||||||||||
Sbjct 781 GGTTCAGAGAAGAGTTTGGAGAGAACGAAGATCCAATGACGTTGAGAACCACGCTAATCG 840
Query 865 AAATGAAGTAAGGGTGGTT-GAATCAGCAG-AAGTAGAAGAAGAACATGTTGGTTCAAGT 922
||||||||||||| |||| || |||| || ||||||||||||||||||| ||||||||
Sbjct 841 GAATGAAGTAAGGGCGGTTAGA-TCAG-AGGAAGTAGAAGAAGAACATGTCGGTTCAAGC 898
Query 923 GAAAGAGCAGAGATATCTGTGCCGTTGATTGATAGAAGACCTGAGCAAGCTGAGAATTCA 982
||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 899 GAAAGGGCAGAGATATCTGTGCCGTTGATTGATCGAAGACCTGAGCAGGCTGAGAATTCA 958
Query 983 GAGACTTTTCTTGAAGGAATTGGGTTGGGATCATCAGGTGCTATCAAGTTAGGGCTTGGG 1042
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GAGACTTTTCTTGAAGGAATTGGGTTGGGATCATCAGGTGCTATCAAGTTAGGGCTTGGG 1018
Query 1043 GATTTCATCTTCTATAGTGTTTTGGTTGGAAGAGCTGCAATGTATGATCTGATGACGGTT 1102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATTTCATCTTCTATAGTGTTTTGGTTGGAAGAGCTGCAATGTATGATCTGATGACGGTT 1078
Query 1103 TACGCTTGTTACTTGGCGATCATAGCTGGTTTAGGGATCACATTGATGCTATTGTCTGTG 1162
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1079 TATGCTTGTTACTTGGCGATCATAGCCGGTTTAGGGATCACATTGATGCTATTGTCTGTG 1138
Query 1163 TATCAGAAGGCTTTACCAGCTCTTCCTGTATCGATCATGTTAGGTGTTGTGTTTTACTTT 1222
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1139 TATCAGAAGGCTTTACCAGCTCTTCCTGTATCGATCATGTTAGGCGTTGTGTTTTACTTT 1198
Query 1223 TTGGCGCGGTTGTTGCTTGAAGTTTTCGTTGTGCAATGTTCTTCTAACCTTGTGATGTTC 1282
||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1199 TTGGCGCGGTTATTGCTTGAAGTTTTTGTTGTGCAATGTTCTTCAAACCTTGTGATGTTC 1258
Query 1283 TAACTGTATGGAATGTGAAAGGGTGGTTTTGAGTACAGTTTCATTTGTTTCGTCAAAACA 1342
||| |||||||| ||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct 1259 TAAGAGTATGGAAAGTGAAAGGGTGATTTTGAGTACAGTTTCGTTTGTTTCGTCAAAATA 1318
Query 1343 ATTTTGTTGGTTTGATTGAT 1362
||| ||||||||||||||||
Sbjct 1319 ATTGTGTTGGTTTGATTGAT 1338
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51656552535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5