BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29910.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933470 jgi|Araly1|933470|scaffold_401458.1 459 4e-128
Ahg478663 jgi|Araly1|478663|fgenesh2_kg.3__1364__AT3G12981.1 296 3e-79
> Ahg933470 jgi|Araly1|933470|scaffold_401458.1
Length=317
Score = 459 bits (248), Expect = 4e-128
Identities = 292/312 (94%), Gaps = 8/312 (3%)
Strand=Plus/Plus
Query 1269 TGCCCTTGTATACCTAAGA-G--GATGAAGAAGAAGAAG-A-A-GGAATTGGGAATATGC 1322
||| |||| |||||||||| | |||||||||||||||| | | |||| ||||||||||
Sbjct 1 TGCGCTTGCATACCTAAGAGGATGATGAAGAAGAAGAAGAAGATGGAAGAGGGAATATGC 60
Query 1323 TGTTTATCGACTTGTCAAGTGAAGGTGCTACATATTTCAGGGTATCAAGGTACATGTAGA 1382
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TGTTTATCGACTTGTCAAGTGAAGGTGCTACGTATTTCAGGGTATCAAGGTACATGTAGA 120
Query 1383 GAGCTGAAACAGATGAGGCATTTCTTGGGAAATTTGAAATGTCTTGAAACTGTCAATGTT 1442
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GAGCTGAAACAGATGAGGCATTTCTTGGGACATTTGAAATGTCTTGAAACTGTCAATGTG 180
Query 1443 GGTGTTGAAATGAATCACCGAGAAGACAACGATGTTGACAACAAATACCTCAGAATCACT 1502
||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||||||
Sbjct 181 GGTGTTGAAGTGAATCACCGAGAAGACAACGATGTTAACAACAAGTACCTGAGAATCACC 240
Query 1503 GATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTAGAATCCATTTCTTCTGATTT 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGTAGAATCCATTTCTTCTGATTT 300
Query 1563 ATCTTCT-CCTC 1573
|||| || ||||
Sbjct 301 ATCT-CTTCCTC 311
> Ahg478663 jgi|Araly1|478663|fgenesh2_kg.3__1364__AT3G12981.1
Length=514
Score = 296 bits (160), Expect = 3e-79
Identities = 255/299 (85%), Gaps = 13/299 (4%)
Strand=Plus/Plus
Query 1011 TATT-TTGGGTGATGTTACCAATCTGGTTACA-GGACTAAGCAACATTAAAACCCTTCAC 1068
|||| || ||||||||||| ||||||||| || ||| ||||||| ||||||||||||||
Sbjct 63 TATTGTT-GGTGATGTTACTAATCTGGTTGCAGGGA-TAAGCAATGTTAAAACCCTTCAC 120
Query 1069 TTGTCTCCTGATTCTCTCGAGGT-GTTCTACTTTTGTTGTAAATCAATGCCGGTGTTTCA 1127
|| ||| |||||||||| ||||| ||| ||| || |||||||||||||||||||||||
Sbjct 121 TTATCTTCTGATTCTCTTGAGGTATTTC-ACTCGTGCTGTAAATCAATGCCGGTGTTTCA 179
Query 1128 CAACCTCCTTACTTTATCTTTTGAGAGTGCCAAA-AAAGAGGCTGGCCAGTG-TTGCCAC 1185
||||||| ||||||||||||||||||||| |||| |||||||||||| || | || ||||
Sbjct 180 CAACCTCGTTACTTTATCTTTTGAGAGTGACAAAGAAAGAGGCTGGCAAGCGGTT-CCAC 238
Query 1186 TTCTCATCAATAAGTCTCCTAACCTAGAGACTTTAGTCATCAAGGGTCTTGTGCACCAAG 1245
||||| |||| || ||||| || ||||| ||||||||||||||||||||||||||| |||
Sbjct 239 TTCTCCTCAACAACTCTCCAAATCTAGAAACTTTAGTCATCAAGGGTCTTGTGCACGAAG 298
Query 1246 TTACACGTAGA-TGCGGGGACGCCTGCCCTTGTATACCTAAGA-GGATGAAGAAGAAGA 1302
||||| | | | ||||| || || ||| |||| || ||||||| |||| |||| |||||
Sbjct 299 TTACA-GAAAAATGCGGAGATGCATGCGCTTGCATCCCTAAGAAGGAT-AAGAGGAAGA 355
Score = 169 bits (91), Expect = 7e-41
Identities = 148/173 (86%), Gaps = 13/173 (8%)
Strand=Plus/Plus
Query 1382 AGAGCTGAAACAGATGAGGCATTTCTTGGGAAATTTGAAATGTCTTGAAACTGTCAATGT 1441
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 353 AGAGCTGAAACAGATGAGGCATTTCTTGGGGAATTTAAAATGTCTTGAAACTGTCAAGGT 412
Query 1442 TGGTGTTGAAAT-GAATCACCGAGAAGACAACGATGTTGACAACAAATACCTCAGAATCA 1500
|||||||||| | || ||| || | ||| |||||| | || | ||| | |||||||
Sbjct 413 TGGTGTTGAAGTCGA-TCA---AG--G-CAAGGATGTT-A-AA-AGGTACATGAGAATCA 462
Query 1501 CTGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGT-AGAATCCATTT 1552
| ||||||||||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 463 CCAATGCTCTTATGAAGCTTCCTAGAGTTTCATCAAACTGTCAGA-TCCATTT 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5