BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29930.1
Length=1952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933473 jgi|Araly1|933473|scaffold_401461.1 412 4e-114
Ahg933470 jgi|Araly1|933470|scaffold_401458.1 300 3e-80
> Ahg933473 jgi|Araly1|933473|scaffold_401461.1
Length=669
Score = 412 bits (223), Expect = 4e-114
Identities = 468/576 (81%), Gaps = 58/576 (10%)
Strand=Plus/Plus
Query 990 GATGTATC-AGAATTTCATCTCTGGCTGCCCTGTGCTTGAGGAATTATTCCTACATTATG 1048
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 20 GATGTATCAAG-ATTTCATCTCTGGCTGCCATGTGCTTGAGGAATTATTCCTACATTATG 78
Query 1049 ATAATGAGACACA-ATGCCCGGCTTGGAAAGGGCTCGTATCGAGTCCTTCCATCAAACGG 1107
||||||| | || ||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 79 ATAATGACTC-CAGATGCCCGGCTTGGAACGGGCTCGTCTCGAGTCCTTCCATCAAACGA 137
Query 1108 CTGAACATCTATGACAATCCTTCC-GAGTTACGTTATGA-GGCTTAC-A--AATGTTGCT 1162
|||||||||||| |||||| |||| |||||||||| | | ||||||| | ||||||| |
Sbjct 138 CTGAACATCTATCACAATC-TTCCTGAGTTACGTT-TAAAGGCTTACGATGAATGTTGGT 195
Query 1163 TTCAGATACCCAGCCTTGTGTACCTTGACTATTCTAGTTATGTGGCG-AAACAGTATGCG 1221
|| ||| || || ||| | |||||||| ||||| |||||||| || ||| |||||| |
Sbjct 196 TTAAGACACGGAGTCTTATATACCTTGAGTATTCGAGTTATGTCACGGAAA-AGTATGTG 254
Query 1222 GTTGATCTGGTTTCCCTTGAAGAAGCTAGACTCAATATCCGA-T-ATCC--G--GA-GAG 1274
|||||| ||| |||||||||||||||||||||| || | ||| | || | || |||
Sbjct 255 GTTGATTTGGGTTCCCTTGAAGAAGCTAGACTCGATCTTCGACTTATAGATGACGATGAG 314
Query 1275 ACTT-G--T-AGATC-A-GAA--TGAGG------A---T-A---T-TTTT-GGTGATGTT 1311
| | | | ||| | | ||| ||||| | | | | |||| ||||||||
Sbjct 315 AATGAGAATGAGAGCGATGAAGATGAGGCTGGTGAGGATGAGAATGTTTTTGGTGATGTG 374
Query 1312 ACGGATTTGCTTAAAGGGATAAGCAATGTTAAAACCCTTCATTTATCTTCTGATTCTCTT 1371
| ||||||| |||||||||| | ||||||||||||||||| ||||||| ||||||||||
Sbjct 375 AAGGATTTGGTTAAAGGGATGATAAATGTTAAAACCCTTCACTTATCTT-TGATTCTCTT 433
Query 1372 GAG-----------G-TGTTTCACTTGTGCTGTGATACAATGCCGGTGTTTCATAACCTC 1419
||| | ||||||||||||| ||||||||||| ||||| ||||| ||||||
Sbjct 434 GAGTAATAAATCCAGGTGTTTCACTTGTGGTGTGATACAATTCCGGTATTTCAAAACCTC 493
Query 1420 CTTACTTTATCTTTTGAGAGTGACGAAGAAATAGGCTGGCAAGTGGTGCCACTTCTCCTC 1479
|| | || || |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 494 CTCA-TT-ATATTTTGAGAGTGATAAAGAAAGAGGCTGGCAAGTGGTGCCACTTCTCCTC 551
Query 1480 AACAAATCTCCAAACCTAGAAACTTTAGTCATCAAG 1515
| ||| |||||||||||||||||| |||||||||||
Sbjct 552 AGCAACTCTCCAAACCTAGAAACTCTAGTCATCAAG 587
> Ahg933470 jgi|Araly1|933470|scaffold_401458.1
Length=317
Score = 300 bits (162), Expect = 3e-80
Identities = 260/306 (85%), Gaps = 12/306 (4%)
Strand=Plus/Plus
Query 1555 TGCGCTTGCAT-CTCTAAGAGGAGGAAGAAAAAGAAGAAGACGACGGAGGATGACG-A-A 1611
||||||||||| | ||||||||| || ||| |||||||||| || ||| || | | | |
Sbjct 1 TGCGCTTGCATAC-CTAAGAGGATGATGAAGAAGAAGAAGAAGATGGAAGA-G-GGAATA 57
Query 1612 TGTTGTTTATCTACATGTCAAGTCAAAGTGCTAAATATTTCAGGGTATCGAGGTACTTGT 1671
|| |||||||| || |||||||| || |||||| |||||||||||||| |||||| |||
Sbjct 58 TGCTGTTTATCGACTTGTCAAGTGAAGGTGCTACGTATTTCAGGGTATCAAGGTACATGT 117
Query 1672 AAAGAGCTGAAACAAATGAGGCATTTCTTGGAGA-ATTTGAAATGTCTTGAAACTGTCAA 1730
| |||||||||||| |||||||||||||||| || |||||||||||||||||||||||||
Sbjct 118 AGAGAGCTGAAACAGATGAGGCATTTCTTGG-GACATTTGAAATGTCTTGAAACTGTCAA 176
Query 1731 TGTGGGTGTTGATGTGAAGCGCAGAGAATATAA-GAATGGTAATAACAAGTACCAGAGGA 1789
|||||||||||| ||||| | | ||||| | || || || ||| |||||||||| ||| |
Sbjct 177 TGTGGGTGTTGAAGTGAATCACCGAGAAGACAACGA-TGTTAACAACAAGTACCTGAGAA 235
Query 1790 TCACCAATGCTGTTATGGAGCTTCCTAGATTTTCATCAAACTGTCAGA-TCCAATTCTTC 1848
||||| ||||| ||||| ||||||| ||| |||||||||||||| ||| |||| ||||||
Sbjct 236 TCACCGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGT-AGAATCCATTTCTTC 294
Query 1849 TGATTT 1854
||||||
Sbjct 295 TGATTT 300
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73361811870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5