BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G29930.1 Length=1952 Score E Sequences producing significant alignments: (Bits) Value Ahg933473 jgi|Araly1|933473|scaffold_401461.1 412 4e-114 Ahg933470 jgi|Araly1|933470|scaffold_401458.1 300 3e-80 > Ahg933473 jgi|Araly1|933473|scaffold_401461.1 Length=669 Score = 412 bits (223), Expect = 4e-114 Identities = 468/576 (81%), Gaps = 58/576 (10%) Strand=Plus/Plus Query 990 GATGTATC-AGAATTTCATCTCTGGCTGCCCTGTGCTTGAGGAATTATTCCTACATTATG 1048 |||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 20 GATGTATCAAG-ATTTCATCTCTGGCTGCCATGTGCTTGAGGAATTATTCCTACATTATG 78 Query 1049 ATAATGAGACACA-ATGCCCGGCTTGGAAAGGGCTCGTATCGAGTCCTTCCATCAAACGG 1107 ||||||| | || ||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 79 ATAATGACTC-CAGATGCCCGGCTTGGAACGGGCTCGTCTCGAGTCCTTCCATCAAACGA 137 Query 1108 CTGAACATCTATGACAATCCTTCC-GAGTTACGTTATGA-GGCTTAC-A--AATGTTGCT 1162 |||||||||||| |||||| |||| |||||||||| | | ||||||| | ||||||| | Sbjct 138 CTGAACATCTATCACAATC-TTCCTGAGTTACGTT-TAAAGGCTTACGATGAATGTTGGT 195 Query 1163 TTCAGATACCCAGCCTTGTGTACCTTGACTATTCTAGTTATGTGGCG-AAACAGTATGCG 1221 || ||| || || ||| | |||||||| ||||| |||||||| || ||| |||||| | Sbjct 196 TTAAGACACGGAGTCTTATATACCTTGAGTATTCGAGTTATGTCACGGAAA-AGTATGTG 254 Query 1222 GTTGATCTGGTTTCCCTTGAAGAAGCTAGACTCAATATCCGA-T-ATCC--G--GA-GAG 1274 |||||| ||| |||||||||||||||||||||| || | ||| | || | || ||| Sbjct 255 GTTGATTTGGGTTCCCTTGAAGAAGCTAGACTCGATCTTCGACTTATAGATGACGATGAG 314 Query 1275 ACTT-G--T-AGATC-A-GAA--TGAGG------A---T-A---T-TTTT-GGTGATGTT 1311 | | | | ||| | | ||| ||||| | | | | |||| |||||||| Sbjct 315 AATGAGAATGAGAGCGATGAAGATGAGGCTGGTGAGGATGAGAATGTTTTTGGTGATGTG 374 Query 1312 ACGGATTTGCTTAAAGGGATAAGCAATGTTAAAACCCTTCATTTATCTTCTGATTCTCTT 1371 | ||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||||| Sbjct 375 AAGGATTTGGTTAAAGGGATGATAAATGTTAAAACCCTTCACTTATCTT-TGATTCTCTT 433 Query 1372 GAG-----------G-TGTTTCACTTGTGCTGTGATACAATGCCGGTGTTTCATAACCTC 1419 ||| | ||||||||||||| ||||||||||| ||||| ||||| |||||| Sbjct 434 GAGTAATAAATCCAGGTGTTTCACTTGTGGTGTGATACAATTCCGGTATTTCAAAACCTC 493 Query 1420 CTTACTTTATCTTTTGAGAGTGACGAAGAAATAGGCTGGCAAGTGGTGCCACTTCTCCTC 1479 || | || || |||||||||||| |||||| |||||||||||||||||||||||||||| Sbjct 494 CTCA-TT-ATATTTTGAGAGTGATAAAGAAAGAGGCTGGCAAGTGGTGCCACTTCTCCTC 551 Query 1480 AACAAATCTCCAAACCTAGAAACTTTAGTCATCAAG 1515 | ||| |||||||||||||||||| ||||||||||| Sbjct 552 AGCAACTCTCCAAACCTAGAAACTCTAGTCATCAAG 587 > Ahg933470 jgi|Araly1|933470|scaffold_401458.1 Length=317 Score = 300 bits (162), Expect = 3e-80 Identities = 260/306 (85%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 1555 TGCGCTTGCAT-CTCTAAGAGGAGGAAGAAAAAGAAGAAGACGACGGAGGATGACG-A-A 1611 ||||||||||| | ||||||||| || ||| |||||||||| || ||| || | | | | Sbjct 1 TGCGCTTGCATAC-CTAAGAGGATGATGAAGAAGAAGAAGAAGATGGAAGA-G-GGAATA 57 Query 1612 TGTTGTTTATCTACATGTCAAGTCAAAGTGCTAAATATTTCAGGGTATCGAGGTACTTGT 1671 || |||||||| || |||||||| || |||||| |||||||||||||| |||||| ||| Sbjct 58 TGCTGTTTATCGACTTGTCAAGTGAAGGTGCTACGTATTTCAGGGTATCAAGGTACATGT 117 Query 1672 AAAGAGCTGAAACAAATGAGGCATTTCTTGGAGA-ATTTGAAATGTCTTGAAACTGTCAA 1730 | |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||| Sbjct 118 AGAGAGCTGAAACAGATGAGGCATTTCTTGG-GACATTTGAAATGTCTTGAAACTGTCAA 176 Query 1731 TGTGGGTGTTGATGTGAAGCGCAGAGAATATAA-GAATGGTAATAACAAGTACCAGAGGA 1789 |||||||||||| ||||| | | ||||| | || || || ||| |||||||||| ||| | Sbjct 177 TGTGGGTGTTGAAGTGAATCACCGAGAAGACAACGA-TGTTAACAACAAGTACCTGAGAA 235 Query 1790 TCACCAATGCTGTTATGGAGCTTCCTAGATTTTCATCAAACTGTCAGA-TCCAATTCTTC 1848 ||||| ||||| ||||| ||||||| ||| |||||||||||||| ||| |||| |||||| Sbjct 236 TCACCGATGCTCTTATGAAGCTTCCCAGAGTTTCATCAAACTGT-AGAATCCATTTCTTC 294 Query 1849 TGATTT 1854 |||||| Sbjct 295 TGATTT 300 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73361811870 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5