BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29960.1
Length=807
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481903 jgi|Araly1|481903|fgenesh2_kg.4__963__AT2G29960.1 1098 0.0
> Ahg481903 jgi|Araly1|481903|fgenesh2_kg.4__963__AT2G29960.1
Length=703
Score = 1098 bits (594), Expect = 0.0
Identities = 670/706 (95%), Gaps = 8/706 (1%)
Strand=Plus/Plus
Query 30 aaaaaaaaaaaCGATCACGAAGATGGCGAAAGCAAGCTTTATTCTACTCGGAACTCTCTT 89
|||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||
Sbjct 1 AAAAAAAAAAACGATCACGAAGATGGCGAAAGCAAGCTCTATTCTACTTGGCACTCTCTT 60
Query 90 CCTCTTCGGAGCCATAGCTTCAATTCAGGCAAAAGAAGATCTCAAGGAGGTTACTCACAA 149
|||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 61 CCTCTTCGGAGCCATAGCTTTGATTCAGGCAAAAGAAGATCTCAAGGAAATTACTAACAA 120
Query 150 GGTTTACTTCGATGTAGAGATCGACGGCAAATCCGCTGGTCGCGTTGTTATAGGAC-TAT 208
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 121 GGTTTACTTCGATGTAGAGATCGACGGCAAATCCGCTGGTCGCGTTGTTATAGG-CTTAT 179
Query 209 TTGGCAAGGCAGTTCCTAAAACTGCAGAAAACTTCAGAGCTTTGTGCACAGGGGAGAAAG 268
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 TTGGCAAGGCAGTTCCTAAAACTGCAGAAAACTTCAAAGCTTTGTGCACAGGGGAGAAAG 239
Query 269 GTGTAGGGAAGAGTGGGAAACCTCTACACTACAAGGGAAGCAAGTTCCATCGAATCATTC 328
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTGTTGGGAAGAGTGGGAAACCTCTACACTACAAGGGAAGCAAGTTCCATCGAATCATTC 299
Query 329 CCAGCTTTATGATCCAGGGAGGTGACTTCACGCATGGGAACGGTATGGGTGGAGAATCAA 388
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 300 CCAGCTTTATGATCCAGGGAGGGGACTTCACACATGGAAACGGTATGGGTGGAGAATCAA 359
Query 389 TCTATGGTCAGAAGTTTGCTGATGAGAACTTCAAGCTGAAGCACACTGGACCAGGTGTAC 448
|||||||||||||||||| ||||| || ||||||||||||||||| ||||||||| | |
Sbjct 360 TCTATGGTCAGAAGTTTGAAGATGAAAATTTCAAGCTGAAGCACACCGGACCAGGTTTGC 419
Query 449 TTTCAATGGCGAACTCGGGAGAAGACACAAATGGTTCGCAGTTTTTTATCACAACGGTGA 508
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 420 TTTCGATGGCGAACTCGGGAGAAGACACAAATGGTTCGCAGTTTTTTATCACAACCGTGA 479
Query 509 CAACAAGCTGGTTAGATGGAAGGCATGTGGTGTTTGGGAAAGTGGTGCAAGGAATGGATG 568
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 480 CAACAAGCTGGTTAGATGGAAGGCATGTGGTGTTTGGGAAAGTGGTTCAAGGAATGGATG 539
Query 569 TAGTTTATAAGATTGAAGCTGAGGGCAAA-CAAAGCGGAACTCCTAAGAGCAAAGTCGTA 627
||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||
Sbjct 540 TAGTTTATAAGATTGAAGCGGAAGG-AAAGCAAAGCGGAACTCCTAAGAGCAAAGTCGTA 598
Query 628 ATTGCAGACAGTGGAGAACTTCCTCTCTAA--GAATA-GCATTTTAAAGTTACTCTTACG 684
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 599 ATTGCAGACAGTGGAGAACTTCCTCTCTAAAAGAATATG-ATTTTAAAGTTACTCTTACG 657
Query 685 AGTTAGTTGTAATCTAAACACGTCCCAAATGCTACAAGAACAGAAT 730
||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 658 AGTTATTTATAATCTAAACACGTCCCAAATGCTAGAAGAACAGAAT 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29812121094
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5