BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29970.1
Length=3378
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481905 jgi|Araly1|481905|fgenesh2_kg.4__965__AT2G29970.1 4835 0.0
> Ahg481905 jgi|Araly1|481905|fgenesh2_kg.4__965__AT2G29970.1
Length=3374
Score = 4835 bits (2618), Expect = 0.0
Identities = 3146/3391 (93%), Gaps = 75/3391 (2%)
Strand=Plus/Plus
Query 1 ATAAAACATAAAAACTATATATTATAAATTAAAAACACTTCTTTTTCATAAAAGCGACTA 60
||| |||||||||||||||||||||||| |||| | | ||||||||||||||||||||||
Sbjct 1 ATATAACATAAAAACTATATATTATAAA-TAAATATATTTCTTTTTCATAAAAGCGACTA 59
Query 61 CACGGTTTTCATTTCTTTGTCGTAAAAATCCCATTTCCAGCTTTAAAAATTTCACGCTTT 120
|||||||||||||||||||||||||||||| ||||||||||||| ||| | |
Sbjct 60 CACGGTTTTCATTTCTTTGTCGTAAAAATCTCATTTCCAGCTTT---TGTTT-A----TA 111
Query 121 GTTTTTGTTTATAGTTTCTTGTATGAATTTTATTGATTGGTGTTGTGGTTTGGTTTACTT 180
| ||| || || |||| | || |||||||| || | | |||||||||||||| ||
Sbjct 112 G--TTTCTTGAT--TTTC---T-TG--TTTTATTGGTT-G-G-TGTGGTTTGGTTTAGTT 158
Query 181 TTAATTTCGAATTTTTTATAACTAAACCGGCGACGATGCCGACACCAGTAACCACGGCGA 240
||||||||||| |||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 159 TTAATTTCGAA--TTTT-CCACTAAACCGGCGACGATGCCGACACCGGTAACCACAGCGA 215
Query 241 GACAATGTTTAACGGAAGAAACAGCGCGTGCATTAGACGACGCAGTCTCCGTCGCGCGTC 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 216 GACAATGTTTAACGGAAGAAACAGCACGTGCATTAGACGACGCAGTCTCCGTCGCGCGTC 275
Query 301 GTCGAAGCCACGCACAAACGACGTCACTTCACGCCGTTTCAGGTCTTTTAACAATGCCTT 360
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 276 GACGAAGCCACGCACAAACGACGTCACTTCACGCCGTTTCAGGTCTTTTAACGATGCCTT 335
Query 361 CATCGATTCTCCGAGAAGTGTGTATCTCACGCGCCGCCCACAACACACCGTACTCTTCAC 420
| || |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 336 CCTCAATTCTCCGAGAAGTGTGTATCTCACGCGCCGCTCATAACACACCGTACTCTTCAT 395
Query 421 GTCTCCAGTTTCGCGCGCTTGAGCTCTGCGTCGGCGTTTCTCTAGACAGATTACCTTCTT 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GTCTCCAATTTCGCGCGCTTGAGCTCTGCGTCGGCGTTTCTCTAGACAGATTACCTTCTT 455
Query 481 CGAAAT------------CAAC-AC--CAACGACGACGGTGGAAGAAGATCCTCCGGTCT 525
|||||| |||| || |||| |||||||||||||||||||||||||| |
Sbjct 456 CGAAATCACCACCACCACCAACAACAACAACAACGACGGTGGAAGAAGATCCTCCGGTGT 515
Query 526 CAAACTCTCTCATGGCGGCGATCAAAAGATCTCAAGCGACTCAACGACGTCATCCAGAGA 585
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 516 CAAACTCACTCATGGCGGCGATCAAAAGATCTCAAGCCACTCAACGACGTCATCCAGAGA 575
Query 586 CTTATCATCTTCATCAAATCCATGG--A-AACAACAACACGGAAACGACGTCGGTTTTGA 642
||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||
Sbjct 576 CTTATCATCTTCATCAAATCCATGGAAACAACAACAACACTCAAACGACGTCGGTTTTGA 635
Query 643 AAGTTGAGTTGAAGTATTTTATACTATCCATTTTAGATGACCCGATTGTGAGTCGGGTCT 702
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 636 AAGTTGAGTTAAAGTATTTTATACTATCCATTTTAGATGACCCGATTGTGAGTCGGGTTT 695
Query 703 TTGGTGAAGCCGGGTTTAGAAGCACCGACATTAAACTCGACGTGCTTCATCCTCCGGTGA 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 696 TTGGTGAAGCCGGGTTTAGAAGCACCGACATTAAACTCGACGTGCTTCATCCTCCGGTGA 755
Query 763 CGTCTCAATTCTCTTCACGGTTCACGTCAAGATCTCGTATTCCTCCTCTGTTTTTATGTA 822
||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 756 CGTCTCAGTTCTCTTCACGGTTTTCTTCAAGATCTCGTATTCCTCCTCTGTTTTTATGTA 815
Query 823 ACTTACCGGAATCTGACT-CGGGTCGGGTTAGATTCGGGTTTCCGTTTGGTGATCTCGAC 881
|| ||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||
Sbjct 816 ACCTACCGGAATCTGA-TCCGGGTCGGGTTAGATTCGGGTTTCCGTTGGGTGATCTCGAC 874
Query 882 GAGAACTGTAGAAGAATCGGTGAAGTTTTAGCG-AGGAAAGATAAGAAGAATCCATTACT 940
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 875 GAGAACTGTAGAAGAATCGGAGAAGTTTTAG-GAAGGAAAGATAAGAAGAATCCATTACT 933
Query 941 AGTTGGTGTTTGTGGTGTTGAAGCTCTTAAAACGTTTACTGATTCTATAAACAGAGGAAA 1000
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 AGTTGGTGTTTGTGGTGGTGAAGCTCTTAAAACGTTTACTGATTCTATAAACAGAGGAAA 993
Query 1001 GTTTGGTTTTTTACCTTTGGAGATTAGTGGGTTAAGTGTAGTTAGTATAAAGATTAGTGA 1060
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 994 GTTTGGTTTTTTACCTCTGGAGATTAGTGGGTTAAGTGTAGTTAGTATAGAGATTAGTGA 1053
Query 1061 AGTTTTAGTTGATGGATCAAGAATAGATATAAAGTTTGATGATTTAGGGAGATTGAAGTC 1120
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1054 TGTTTTAGTTGATGGATCAAGAATCGATATAAAGTTTGATGATTTAGGAAGATTGAAGTC 1113
Query 1121 AGGGATGGTTTTGAACCTTGGAGAGTTAAAGGTTTTAGCTAGTGATGTTTTCTCTGTTGA 1180
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1114 AGGGATGGTTTTGAATCTTGGAGAGTTAAAGGTTTTAGCTAGTGATGTTTTCTCTGTT-A 1172
Query 1181 -TGTGATTGAGAAGTTTGTGTTGAAGCTCGCTGATTTGTTGAAGCTTCACCGTGAGAAAC 1239
|||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct 1173 GTGTGGTTGAGAAGTTTGTGTTGAAGCTCTCTGATTTGTTGAAGCTTCACAGTGAGAAGC 1232
Query 1240 TTTGGTTTATTGGAAGTGTTTCGAGTAATGAGACGTATTTGAAGCTGATTGAGAGGTTTC 1299
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1233 TTTGGTTTATTGGAAGTGTTTCGAGTAATGAGACGTATTTGAAGCTGATTGAGAAGTTTC 1292
Query 1300 CAACGATTGATAAAGATTGGAATCTTCATCTTCTTCCTATTACATCTTCAAGTCAAGGGC 1359
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CGATGATTGATAAAGATTGGAATCTTCATCTTCTTCCTATTACATCTTCAAGTCAAGGGG 1352
Query 1360 TTTATCCAAAATCTAGTTTGATGGGATCTTTTGTTCCATTTGGAGGGTTTTTCTCATCCA 1419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1353 TTTATCCAAAATCTAGTTTGATGGGATCTTTTGTTCCATTTGGAGGGTTTTTCTCATCAA 1412
Query 1420 CATCGGATTTTAGAATACCGTCTAGTAGCTCGATGAATCAGACTTTACCTCGGTGTCATC 1479
|||||||||||||| |||||| ||||| |||||||||||||| ||| |||||||||||||
Sbjct 1413 CATCGGATTTTAGAGTACCGTTTAGTAACTCGATGAATCAGAGTTTGCCTCGGTGTCATC 1472
Query 1480 TTTGTAACGAGAAGTATGAGCAAGAAGTCACCGCCTTTGCTAAGTCGGGGTCGATG-ATC 1538
||||||| |||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 1473 TTTGTAATGAGAAGTATGAGCAAGAAGTCACCGCCTTTGCTAAGTCCGGGTCGA-GTCTC 1531
Query 1539 GATGATCAGTGTTCGGAGAAGTTACCTTCTTGGTTACGAAATGTGGAGCATGAACACGAG 1598
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1532 GATGATCAGTGTTCAGAGAAGTTACCTTCTTGGTTACGAAATGTGGAGCATGAACAAGAC 1591
Query 1599 AAAGGAAATCTCGGAAAGGTTAAAGATGATCCAAACGTATTAGCCTCTCGGATTCCCGCT 1658
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 AAAGGAAGTCTCGGAAAGGCTAAAGATGATCCAAACGTATTAGCCTCTCGGATTCCCGCT 1651
Query 1659 CTGCAGAAGAAATGGGACGACATTTGTCAAAGAATCCATCAAACTCCGGCGTTTCCTAAA 1718
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1652 CTGCAGAAGAAATGGGACGACATTTGTCAAAGAATCCATCAAACTCCGGCTTTTCCTAAA 1711
Query 1719 CTCAGTTTTCAGCCCGTTAGACCGCAGTTCCCGCTTCAGCTTGGTT-CTTCTAGCCAGAC 1777
||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct 1712 ATCAGTTTTCAGCCTGTTAGACCGCAGTTCCCGCTTCAGCT-GGTTTCTTCTAGCCAGTC 1770
Query 1778 CAAGATGAGTCTTGGAAGCCCAACTGAGAAAATTGTTTGCA-C-T-AGGACGTCTGAAAG 1834
|||||||||||| ||||||||||||||| ||| |||| ||| | | ||||||||||||||
Sbjct 1771 CAAGATGAGTCTCGGAAGCCCAACTGAGCAAAGTGTTCGCAGCATTAGGACGTCTGAAAG 1830
Query 1835 CTTTCAAGGGATGGTGGCTCTACCGCAGAATCCGCCACACCAACCTGGTTTATCAGTCAA 1894
|||||| |||| || ||| | ||||||||| ||||||||||| ||||||||||| ||
Sbjct 1831 CTTTCAGGGGACGG---CTCAAGTGCAGAATCCACCACACCAACCCGGTTTATCAGTTAA 1887
Query 1895 AATCTCAAAGCCAAAACATACTGAGGATCTCTCAAGTT-CAACAACGAACTCGCCTTTGA 1953
|||||||| |||||||| || ||||||||| ||||| || ||||||||||||||||||
Sbjct 1888 GATCTCAAAACCAAAACAGACAGAGGATCTCACAAGTCGCA-CAACGAACTCGCCTTTGA 1946
Query 1954 GCTTTGTTACAACAGATTTAGGGTTGGGAACAATCTACGCATCGAAGAACCAAGAACCAA 2013
||| |||||||||||||||||| |||||||||||||| |||||||| ||||| || |||
Sbjct 1947 GCTGTGTTACAACAGATTTAGGATTGGGAACAATCTATGCATCGAAAAACCAGGATTCAA 2006
Query 2014 GCACACCAGTATCAGTTGAAA-GGAGAGACTTTGAGGTGATCAAAGAGAAACAATTGTTG 2072
|||||| ||||| | | ||| ||||||||||||||||||||||||| ||||||| ||||
Sbjct 2007 ACACACCTGTATC-GCTCAAAAGGAGAGACTTTGAGGTGATCAAAGAAAAACAATCGTTG 2065
Query 2073 -TCAGCTTCGAGATACTGCAAAGATTTCAAGTCTCTCAGGGAACTACTCTCTCGAAAAGT 2131
| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2066 GTG-GCTTCAAGATACTGCAAAGATTTCAAGTCTCTCAGGGAATTACTCTCTCGAAAAGT 2124
Query 2132 CGGTTTTCAGAACGAAGCTGTGAATGCGATTAGCGAAATTGTTTGTGGATACAGAGATGA 2191
|||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2125 CGGTTTTCAGAATGAAGCTGTGAATGCCATTAGCGAAATCGTTTGTGGATACAGAGATGA 2184
Query 2192 GTCCAGGAGAAGAAACAACCACGTAGCAACCACAAGTAATGTTTGGCTTGCTCTTCTTGG 2251
|||||||||||||||| || | |||||||||||||||||||||||||||||||||||||
Sbjct 2185 GTCCAGGAGAAGAAACCAC-A--TAGCAACCACAAGTAATGTTTGGCTTGCTCTTCTTGG 2241
Query 2252 ACCTGATAAAGCCGGGAAGAAGAAAGTAGCATTAGCTCTTGCTGAAGTCTTCTGTGGTGG 2311
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || ||
Sbjct 2242 ACCTGATAAAGCCGGGAAGAAGAAAGTAGCATCAGCTCTTGCCGAAGTCTTCTGCGGGGG 2301
Query 2312 ACAAGACAACTTCATCTGTGTGGATTTCAAGTCACAAGACAGTCTTGACGATAGATTCAG 2371
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2302 CCAAGACAACTTCATCTGTGTGGATTTCAAGTCACAGGACAGTCTTGACGATAGATTCAG 2361
Query 2372 AGGGAAAACAGTTGTTGATTACATTGCTGGCGAAGTGGCGAGACGTGCGGATTCTGTTGT 2431
||| |||||||||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 2362 AGGAAAAACAGTTGTTGATTACATTGCTAACGAAGTGGCGAGGCGGGCGGATTCTGTTGT 2421
Query 2432 TTTCATCGAAAACGTGGAAAAGGCCGAGTTCCCTGATCAGATCAGATTGTCTGAGGCTAT 2491
||||||||||||||||||||| || |||||||||||||| |||||||||||||| |||||
Sbjct 2422 TTTCATCGAAAACGTGGAAAAAGCTGAGTTCCCTGATCAAATCAGATTGTCTGATGCTAT 2481
Query 2492 GAGAACTGGAAAACTCCGTGACTCGCATGGGAGAGAGATCAGTATGAAAAATGTTATAGT 2551
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2482 TAGAACTGGAAAACTCCGGGACTCGCATGGGAGAGAGATCAGTATGAAAAATGTTATAGT 2541
Query 2552 TGTTGCTACTATTTCTGGAAGTGATAAAGCCAGTGATTGTCATGTTCTTGAAGAACCAGT 2611
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 2542 TGTTGCTACTATTTCTGGAAGTGATAAAGACAGTGATTGTCATGTTCTTGAAGAACCGGT 2601
Query 2612 CAAATACTCCGAGGAAAGAGTTCTCAATGCCAAAAACTGGACACTTCAGATAAAACTAGC 2671
|||||| || |||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct 2602 CAAATATTCAGAGGAAAGAGTTCTCAGTGCCAAAAACTGGAAACTTCAGATAAGACTAGC 2661
Query 2672 -AGACACTTCAAATGTTAACAAGAATGGTCCCAATAAGAGAAGACAGGAGGAGGCAGAAA 2730
| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 2662 CA-ACACTTCAAATGTTAACAAGAATGGTCCGAATAAGAGAAGACAAGAGGAGGCAGAAA 2720
Query 2731 CAGAGGTGACAGAGCTTCGAGCCCTTAAGTCTCAGCGTTCGTTTCTTGATCTAAATCTTC 2790
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2721 CAGAGGTGACAGAGCTTCGAGCCCTTAAGTCTCAACGTTCGTTTCTTGATCTGAATCTTC 2780
Query 2791 CTGTGGATGAGATTGAAGCAAACGAAGACGAAGCGTATACAATGTCGGAGAACACAGAAG 2850
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2781 CTGTGGATGAGATAGAAGCAAACGAAGACGAAGCGTATACAATGTCCGAGAACACGGAAG 2840
Query 2851 CTTGGCTTGAGGATTTTGTGGAACAAGTAGATGGGAAAGTGACGTTCAAGCTTATTGACT 2910
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 2841 CTTGGCTTGAGGATTTTGTGGAACAAGTAGACGGGAAAGTGACTTTCAAGCTTATTGACT 2900
Query 2911 TTGATGAGTTAGCAAAAAACATAAAAAGGAATATTCTTTCGCTATTTCATCTGTCTTTTG 2970
||||||||||||| || ||| |||||||||| || |||||||||||||||| ||||||||
Sbjct 2901 TTGATGAGTTAGCTAAGAACGTAAAAAGGAACATCCTTTCGCTATTTCATCGGTCTTTTG 2960
Query 2971 GACCTGAAACACATCTAGAGATCGAAAACGATGTGATCCTTAAGATTCTTGCTGCTTTAA 3030
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||
Sbjct 2961 GACCTGAAACACATCTAGAGATCGAAAACGATGCGATCCTTAAGATTCTTGGTGCCTTAA 3020
Query 3031 GATGGTCATCAGATGAAGAGAAAACATTTGATCAGTGGCTGCAAACTGTTCTTGCTCCAA 3090
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 3021 GATGGTCATCAGATGAAGAGAAAACATTTGATCAATGGCTGCAAAATGTTCTTGCTCCAA 3080
Query 3091 GCTTTGCTAAAGCGAGACAAAAGTGTGTTCCCGCTGCTCCTTTTTCTGTGAAACTTGTTG 3150
||||| |||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 3081 GCTTTACTAAAGCGAGACAAAAGTATGTTCCCGCTACTCCTTTTGCTGTGAAACTTGTTG 3140
Query 3151 CCTCTAGAGAGTCTCCGGCTGAAGAGGAGACTACAGGGATACAACAGTTTCCGGCGAGAG 3210
|||||||||| ||| ||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 3141 CCTCTAGAGATTCTTCGGCTGAAGAGGAAACTACCGGAATACAACAGTTTCCGGCGAGAG 3200
Query 3211 TCGAAGTGATCTGATTATT-GTTG-TTGTAATTTTATGTATAAGTGATGATAGTTATATA 3268
||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||||
Sbjct 3201 TCGAAGTGATCTGATTATTTGT-GATTGTAATTTCATGTATAAGTGATGATAGTTATATA 3259
Query 3269 GATTATCCCAGAGTTTTGTAATCGGCTTGGTTTGAGTTTGTTCTTTGTCACTAAATGTAT 3328
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3260 GATTTTCCCAGAGTTTTGTAATCGGCTTGGTTTGAGTTTGTGCTTTGTCACTAAATGTAT 3319
Query 3329 ATATTATATAGTCATAAAGCTGAGCTATTAA 3359
|| | |||||| | |||||||||| ||||||
Sbjct 3320 AT-T-ATATAGGCTTAAAGCTGAGTTATTAA 3348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127530927123
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5