BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29990.1
Length=1749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481908 jgi|Araly1|481908|fgenesh2_kg.4__968__AT2G29990.1 2313 0.0
Ahg919443 jgi|Araly1|919443|scaffold_100724.1 1266 0.0
> Ahg481908 jgi|Araly1|481908|fgenesh2_kg.4__968__AT2G29990.1
Length=1515
Score = 2313 bits (1252), Expect = 0.0
Identities = 1439/1528 (94%), Gaps = 18/1528 (1%)
Strand=Plus/Plus
Query 1 ATGTTCATGATCAAAAACCTCACACGAATTTCACCAAATACATCATCAATCATCACCAGA 60
|||||| |||||||||||||| ||||||| ||||||| | ||||||||||| ||||||||
Sbjct 1 ATGTTCTTGATCAAAAACCTCTCACGAATCTCACCAACTTCATCATCAATCGTCACCAGA 60
Query 61 TTCAGAAACTCCGGATCATCATCATTATCATACACTCTCGCTTCTCGTTTCTGCACAGC- 119
||| ||| | |||| ||| || | |||||||||||| ||||||||||||||
Sbjct 61 TTCCGAAGCACCGG------ATC---AT--T-CACTCTCGCTTCCCGTTTCTGCACAGCT 108
Query 120 TCAAGAGACTCAGATTCAATCTCCAGCTAAAATTCCAAATGATGTGGATCGGAGTCAGTA 179
|| ||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||
Sbjct 109 TC-AGAGACTCAGATTCAATCTCCGGCTAAAATTTCAAATGATGTGGATCAGAGTCAATA 167
Query 180 TTCAGGTTT-GCCACCGACGAGAGAAGGAGAGAAGCCGAGAGTAGTGGTTCTCGGGTCGG 238
| ||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 168 TGCAGGTTTAG-CACCGACGAGAGAAGGAGAGAAACCGAGAGTGGTGGTTCTCGGGTCGG 226
Query 239 GTTGGGCGGGTTGTCGATTGATGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 GTTGGGCGGGTTGTCGATTGATGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTG 286
Query 299 TTTCTCCGAGAAACCATATGGTTTTCACTCCTCTTCTTGCTTCTACTTGTGTTGGTACTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 TTTCTCCGAGAAACCATATGGTTTTCACTCCTCTTCTTGCTTCTACTTGTGTTGGTACTC 346
Query 359 TCGAATTTAGGTCTGTTGCTGAACCTATCTCACGTATTCAACCTGCGATTTCTAGAGAGC 418
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 347 TCGAATTTAGGTCTGTCGCTGAGCCTATCTCACGGATTCAACCTGCGATTTCTAGAGAGC 406
Query 419 CTGGTTCTTTTTTCTTCCTCGCTAATTGCTCTCGTCTTGATGCTGATGCTCATGAGGTTC 478
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 407 CTGGTTCTTATTTCTTCCTCGCTAATTGCTCTCGTCTTGATGCTGAGGCTCATGAGGTTC 466
Query 479 ATTGTGAGACTTTGACTGATGGATTGAACACATTAAAGCCATGGAAGTTTAAGATTGCTT 538
| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 467 ACTGTGAGACTTTAACTGATGGCTTGAATACATTAAAGCCATGGAAGTTCAAGATTGCTT 526
Query 539 ATGATAAGCTTGTGATAGCAAGTGGTGCAGAGGCTTCTACGTTTGGAATCCATGGTGTTA 598
|||||||||||||| |||| || ||||||||||| || |||||||||||||||||||| |
Sbjct 527 ATGATAAGCTTGTGGTAGCTAGCGGTGCAGAGGCGTCAACGTTTGGAATCCATGGTGTCA 586
Query 599 TGGAAAATGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTAC 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TGGAAAACGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTAC 646
Query 659 TTTTGAATCTGATGCTCTCTGATACTCCTGGTATATCGAAAGAGGAGAAAAGGAGGCTGT 718
|||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 647 TTTTAAATCTGATGCTCTCTGATACTCCTGGCATATCGAAAGAGGAGAAAAAGAGGCTGT 706
Query 719 TACATTGTGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGTGGTGAACTGAGTG 778
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 707 TACATTGCGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGCGGTGAACTGAGTG 766
Query 779 ACTTTATTATGAAAGATGTTCGTCAACGATATGCCCATGTTAAGGACGACATTCATGTTA 838
||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 767 ACTTTATCATGAAAGATGTTCGTCAACGATATTCCCATGTGAAGGACGACATTCATGTTA 826
Query 839 CTTTGATAGAGGCCAGGGATATTCTTTCATCCTTCGATGATCGTCTCAGACGTTATGCTA 898
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 827 CTTTGATAGAGGCCAGGGATATACTTTCATCTTTCGATGATCGTCTCAGACGTTATGCTA 886
Query 899 TCAAGCAGTTAAACAAGTCTGGAGTACGGTTTGTGCGAGGGATTGTGAAAGATGTGCAGT 958
| |||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 887 TAAAGCAGTTGAACAAGTCTGGAGTGCGGTTTGTGCGTGGCATTGTGAAAGATGTGCAGT 946
Query 959 CTCAGAAGTTAATACTTGACGATGGCACAGAGGTTCCCTACGGACTCTTAGTGTGGTCCA 1018
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 947 CTCAGAAGCTAATACTTGACGATGGCACAGAAGTTCCCTACGGACTCTTAGTGTGGTCCA 1006
Query 1019 CTGGTGTTGGTCCTTC-TCCTTTCGTTAGGTCTCTTGGTCTTCCAAAAGATCCTACTGGA 1077
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 CTGGTGTTGGTCCTTCCTC-TTTCGTTAGGTCTCTTGGTCTTCCAAAAGATCCTACTGGA 1065
Query 1078 AGGATTGGCATTGACGAATGGATGCGTGTACCTTCAGTGCAAGACGTGTTTGCCATTGGT 1137
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1066 AGGATTGGCATTGACGAATGGATGCGTGTACCTTCTGTACAAGACGTGTTTGCCATTGGT 1125
Query 1138 GACTGCAGCGGATATCTGGAGACCACCGGAAAACCGACTCTTCCTGCTCTAGCTCAGGTA 1197
||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1126 GACTGCAGCGGATATCTGGAGACCACCGGAAAACCAACCCTTCCTGCTCTCGCTCAGGTA 1185
Query 1198 GCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGCGATCGGGAAAGGCAATGGA 1257
|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||
Sbjct 1186 GCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGAGATTGGGAAAGCCAATGGA 1245
Query 1258 GGACGAGCCAACAGCGCAAAGGAGATAGAACTTGGAGTTCCCTTTGTGTATAAGCACCTT 1317
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1246 GGACGGGCCAACAGCGCAAAGGAGATAGAACTTGGAGCTCCATTTGTGTATAAGCACCTT 1305
Query 1318 GGAAGCATGGCTACTATCGGTCGATACAAAGCCCTAGTCGACCTTCGCGAGAGCAAGGAC 1377
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1306 GGAAGCATGGCTACGATCGGTAGATACAAAGCACTAGTCGACCTTCGCGAGAGCAAGGAC 1365
Query 1378 GCAAAAGGGATATCAATGACTGGTTTCGTGAGCTGGTTCATATGGAGATCGGCGTACCTG 1437
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1366 GCAAAAGGGATATCAATGACTGGTTTCGTGAGCTGGTTCATATGGAGGTCGGCGTATCTG 1425
Query 1438 ACTCGAGTCATAAGCTGGAGAAACCGATTCTATGTCGCTATCAACTGGTTCACCACTTTC 1497
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1426 ACTCGAGTCGTAAGCTGGAGAAACCGATTCTATGTCGCCATCAACTGGTTCACCACTTTC 1485
Query 1498 GTTTTTGGTCGTGACATTAGCCGTATCT 1525
|| || ||||||||||||||||||||||
Sbjct 1486 GTCTTCGGTCGTGACATTAGCCGTATCT 1513
> Ahg919443 jgi|Araly1|919443|scaffold_100724.1
Length=1571
Score = 1266 bits (685), Expect = 0.0
Identities = 1141/1360 (84%), Gaps = 36/1360 (3%)
Strand=Plus/Plus
Query 184 GGTTTGCCACCGACGAGAGAAGGAGAGAAGCCGAGAGTAGTGGTTCTCGGGTCGGGTTGG 243
|||||| | ||||| | |||||| ||||||||||| || ||||||||||||||||||||
Sbjct 208 GGTTTGGCTCCGACTAAAGAAGGTGAGAAGCCGAGGGTTCTGGTTCTCGGGTCGGGTTGG 267
Query 244 GCGGGTTGTCGA-TTGATGAAAGGGATCGATACGAATCTCTACGACGTCGTTTGTGTTTC 302
||||||||||| || ||||||||||||||||||| | | ||||||||||||||||| ||
Sbjct 268 GCGGGTTGTCGGCTT-ATGAAAGGGATCGATACGAGTATTTACGACGTCGTTTGTGTCTC 326
Query 303 TCCGAGAAACCATATGGTTTTCACTCCTCTTCTTG-CTTCTACTTGTGTTGGTACTCTCG 361
||| || ||||| ||||| ||||||||||| |||| |||||||||| |||||||| || |
Sbjct 327 TCCTAGGAACCACATGGTCTTCACTCCTCT-CTTGGCTTCTACTTGCGTTGGTACCCTTG 385
Query 362 AATTTAGGTCTGTTGCTGAACCTATCTCACGTATTCAACCTGCGATTTCTA-GAGAGCCT 420
| |||||||| ||||||||||| ||||| ||||| ||||| |||||||| | |||| ||
Sbjct 386 AGTTTAGGTCCGTTGCTGAACCAATCTCTCGTATCCAACCGGCGATTTC-ACGAGAACCC 444
Query 421 GGTTCTTTTTTCTTCCTCGCTAATTGCTCTCGTCTTGATGCTGATGCTCATGAGGTTCAT 480
||||||| || ||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct 445 GGTTCTTATTACTTCCTCGCTAATTGCTCTAAACTTGATGCTGATAATCATGAGGTGCAT 504
Query 481 TGTGAGACTTTGACTGATGGAT-TGAACACATTAAAGCCATGGAAGTTTAAGATTGCTTA 539
||||||||| | ||||| || | | | |||||| |||||||||||||| ||||| |||||
Sbjct 505 TGTGAGACTGTAACTGAAGGCTCT-AGCACATTGAAGCCATGGAAGTTCAAGATAGCTTA 563
Query 540 TGATAAGCTTGTGA-TAGCAAGTGGTGCAGAGGCTTCTACGTTTGGAATCCATGGTGT-T 597
|| || || || | |||| |||||||||| || || || |||||||| |||| || |
Sbjct 564 CGACAAACTGGT-ACTAGCTTGTGGTGCAGAAGCATCCACATTTGGAATTAATGGCGTCT 622
Query 598 ATGGAAAATGCGATCTTCCTTCGTGAAGTTCACCATGCTCAGGAGATTCGTAGGAAGCTA 657
| ||||| || |||||||| ||||| |||||||| ||||| || || |||||||||||
Sbjct 623 -TAGAAAACGCCATCTTCCTCCGTGAGGTTCACCACGCTCAAGAAATCCGTAGGAAGCTT 681
Query 658 CTT-TTGAATCTGATGCTCTCTGATACT-CCTGGTATATC-GAAAGAGGAGAA-AAGGAG 713
||| || || || ||||||||||| | | || || ||||| ||| || ||||| ||| ||
Sbjct 682 CTTCTT-AACCTCATGCTCTCTGA-AGTTCCAGGCATATCCGAA-GATGAGAAGAAG-AG 737
Query 714 GCTGTTACATTGTGTTGTGGTTGGTGGTGGACCAACTGGTGTTGAGTTTAGTGGTGAACT 773
| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
Sbjct 738 GTTGTTGCATTGTGTTGTGGTTGGAGGTGGGCCAACTGGTGTTGAGTTTAGTGGTGAATT 797
Query 774 GAGTGACTTT-ATTATGAAAGATGTTCGTCA-ACGATATGCCCATGTTAAGGACGACATT 831
|||||| ||| || ||||||||||||||||| | ||||| | ||||| || || ||||||
Sbjct 798 GAGTGA-TTTCATCATGAAAGATGTTCGTCAGA-GATATTCTCATGTGAAAGATGACATT 855
Query 832 CATGTTACTTTGATAGAGGCCAGGGATATTCTTTCATCCTTCGATGATCGTCTCAGACGT 891
| ||||||||||| ||||| |||||||| ||||| || ||||||||||| || || |
Sbjct 856 CGCGTTACTTTGATTGAGGCAAGGGATATACTTTCTTCGTTCGATGATCGGCTAAGGCAC 915
Query 892 TATGCTATCAAGCAGTTAAACAAGTCTGGAGT-ACGGTTTGTGCGAGGGATTGTGAAAGA 950
||||| |||||||||||||||||||||||||| | | || ||||||||||||||||||||
Sbjct 916 TATGCAATCAAGCAGTTAAACAAGTCTGGAGTGAAGCTT-GTGCGAGGGATTGTGAAAGA 974
Query 951 TGTGCAGTCTCAGAAGTTAATACTTGACGATGGCACAGAGGTTCCCTACGGACTCTTAGT 1010
||| || |||||||| |||| ||||| ||||| || || ||||| ||||| ||||||||
Sbjct 975 AGTGAAGCCTCAGAAGCTAATCCTTGATGATGGTACTGAAGTTCCTTACGGTCTCTTAGT 1034
Query 1011 GTGGTCCACTGGTGTTGGTCCTTCTCC-TTTCGTTAGGTCTCTTGGTCTTCCAAAAGATC 1069
||||| |||||||||||||| ||| | ||| || |||||||||| | ||||||||||||
Sbjct 1035 CTGGTCAACTGGTGTTGGTCCATCTTCATTT-GTGAGGTCTCTTGATTTTCCAAAAGATC 1093
Query 1070 CTAC-TGGAAGGATTGGCATTGACGAATGGATGCGTGTACCTTCAGTGCAAGACGTGTTT 1128
| | |||||||||||| ||||| || ||||||||||||||||| || ||||||||||||
Sbjct 1094 C-AGGTGGAAGGATTGGTATTGATGAGTGGATGCGTGTACCTTCTGTACAAGACGTGTTT 1152
Query 1129 GCCATTGGTGACTGCAGCGGATATCTGGAGACCACCGGAAAACCGACTCTTCCTGCTCTA 1188
|| ||||||||||| ||||||||||| |||| ||| || ||| | || |||||||||||
Sbjct 1153 GCAATTGGTGACTGTAGCGGATATCTCGAGAGCACAGGGAAATCAACACTTCCTGCTCTT 1212
Query 1189 GCTCAGGTAGCTGAGAGAGAAGGCAAATACTTGGCGAATCTACTAAATGCGATCGGGAAA 1248
|| ||||| |||||||||||||||||||||||||| ||||| | || | ||| ||||||
Sbjct 1213 GCACAGGTGGCTGAGAGAGAAGGCAAATACTTGGCAAATCTGTTTAACGTGAT-GGGAAA 1271
Query 1249 GGCA--ATGGAGGACGAGCCAACAGCGCAAAGGAGATAGAACTTGGAGTTCCCTTTGTGT 1306
|| | |||||||||||||| ||||||||||| || || ||||||| || |||||||
Sbjct 1272 AGCTGGA-GGAGGACGAGCCAATAGCGCAAAGGAAATGGAGCTTGGAGAACCATTTGTGT 1330
Query 1307 ATAAGCACCTTGG-AAGCATGGCTACTATCGGTCGATACAAAGCCCTAGTCGACCTTCGC 1365
|||| || |||| ||| ||||||||||| || |||||||||| || || || || ||
Sbjct 1331 ATAAACAT-TTGGGAAGTATGGCTACTATTGGAAGATACAAAGCTCTTGTTGATCTCCGT 1389
Query 1366 GAGAGCAAGGACGCAAAAGGGATATCAATGACTGGTTTCGTGAGCTGGTTCATATGGAGA 1425
||||| ||||| | |||||| ||||||||| | ||||| ||||||||||||||||||||
Sbjct 1390 GAGAGTAAGGAAGGAAAAGGAATATCAATGGCAGGTTTTGTGAGCTGGTTCATATGGAGG 1449
Query 1426 TCGGCGTACCTGACTCGAGTCATAAGCTGGAGAAACCGATTCTATGTCGCTATCAACTGG 1485
|| || || |||||||||||| | |||||||||||||| |||||||| |||||||| |||
Sbjct 1450 TCTGCTTATCTGACTCGAGTCGTCAGCTGGAGAAACCGTTTCTATGTTGCTATCAATTGG 1509
Query 1486 TTCACCACTTTCGTTTTTGGTCGTGACATTAGCCGTATCT 1525
|||| ||||| || |||||||||||||||||||| ||||
Sbjct 1510 CTCACTACTTTTGTCTTTGGTCGTGACATTAGCCGAATCT 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65629492135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5