BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G29995.1
Length=522
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481909 jgi|Araly1|481909|fgenesh2_kg.4__969__AT2G29995.1 444 3e-124
> Ahg481909 jgi|Araly1|481909|fgenesh2_kg.4__969__AT2G29995.1
Length=484
Score = 444 bits (240), Expect = 3e-124
Identities = 427/509 (84%), Gaps = 46/509 (9%)
Strand=Plus/Plus
Query 1 GCCGGTGTGAGACGTTTTGTGGCGTCTATAAATAT-ACAAGAGGTGAGAGAGAAAGaaaa 59
||||||||||||| |||||||||||||| |||||| | ||||||||| | | ||
Sbjct 1 GCCGGTGTGAGACTTTTTGTGGCGTCTACAAATATAAAAAGAGGTGA-A-CG--AG---- 52
Query 60 aaaGAAAGAGTAAAACAATGGGTTATTCATCATCCTCAAGAATTGGGTTATGTTTGTTCC 119
|| |||| | || ||||||||| | ||||| |||||| || |||||||| ||||||
Sbjct 53 --AG--AGAG-AGAA-AATGGGTTA-T--TCATCGTCAAGATTTTGGTTATGTATGTTCC 103
Query 120 TCTTCTTCACATTTGCTCTTC-TCTCTTCTGCTCGCATCAGTCTTTCATTTTCAGAAAAT 178
||||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 104 TCTTCTTCACATTTGCT-TTCCTCTCTTCTGCTCGCATCAGTGTTTCATTTCCAGAAAAT 162
Query 179 GAAATGACGGTGGTGCCAGAACGGTCATTGATGGTGAGCACCAACGACTACAGTGACCCT 238
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||
Sbjct 163 GAAATGACGGTGGTGCCAGAACGGTCATTGATGGTAAGCACCAACGACTACGGTGAGCCT 222
Query 239 ACAGCTAACGGTAGACATGATCCACCCCGTGGAGGCAGAGGAC-GCAGACGTTAAGAGAG 297
|||||||||||||||| |||||||| ||||| |||||| || ||||||||| |||||
Sbjct 223 TCAGCTAACGGTAGACACGATCCACCGCGTGGCGGCAGAA-ACCGCAGACGTT--GAGAG 279
Query 298 AGGATAA---T-TT-T---CTTAAT-TTTCCGA-CTCCTCTTGC-AAGCTTG-CAAATAA 345
||||||| | || | ||||| ||||| | |||||||||| || ||| |||||||
Sbjct 280 AGGATAACAATCTTATTTTCTTAAAATTTCCCAGCTCCTCTTGCTAA--TTGGCAAATAA 337
Query 346 TCTATATATATAGAAAACAGTAAAAGTAGTTTTAAAAA----CGAGTTATATATGTGATA 401
|||||||||||||||| || |||||||| ||| ||||| || ||||||||||| |||
Sbjct 338 TCTATATATATAGAAAGCAATAAAAGTA-TTTAAAAAAAAAACGTGTTATATATGTAATA 396
Query 402 TCAGAgtgtgtgtgtgtgtAATATATAATACTTCATTTGCATTTGTGTTCT--CTACATC 459
||||| ||| || | |||||||||||| || || |||||||||||||||| |||||||
Sbjct 397 TCAGACTGT-TGACTTTGTAATATATAACACCTCGTTTGCATTTGTGTTCTTTCTACATC 455
Query 460 GACTTCAACTTGTTATTCTTACCTAGATT 488
||||| ||||||||||| ||||| |||||
Sbjct 456 GACTTGAACTTGTTATTTTTACCAAGATT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001483322
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5