BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30000.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933488 jgi|Araly1|933488|scaffold_401476.1                        531    3e-150


> Ahg933488 jgi|Araly1|933488|scaffold_401476.1
Length=374

 Score =  531 bits (287),  Expect = 3e-150
 Identities = 336/360 (93%), Gaps = 2/360 (1%)
 Strand=Plus/Plus

Query  104  CACTGTTCCAGTAAGCCATGGCGAAGCATCACCCTGATTTGATCATGTGCCGGAAACAAC  163
            |||||||   || ||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct  6    CACTGTTTTGGT-AGCTATGGCGAAGCATCACCCTGATTTGATCATGTGCAGGAAACAAC  64

Query  164  CCGGAATTGCTATTGGACGACTGTGTGAGAAATGCGATGGGAAATGCGTGATTTGTGATT  223
            |||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  65   CCGGAATTGCCATTGGACGACTGTGTGAGAAATGCGACGGGAAATGTGTGATTTGTGATT  124

Query  224  CTTATGTGCGTCCGTGTACTCTAGTACGTATTTGTGATGAATGCAACTACGGGTCATTCC  283
            ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  125  CTTATGTGCGTCCATGTACTCTGGTACGTATTTGTGATGAATGCAACTACGGGTCATTCC  184

Query  284  AAGGTCGGTGTGTTATATGCGGTGGCGTTGGAATCTCAGATGCTTATTACTGCAAAGAGT  343
            ||||||||||||| |||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct  185  AAGGTCGGTGTGTGATATGCGGAGGGGTTGGAATCTCCGATGCTTATTACTGTAAAGAGT  244

Query  344  GTACACAGCAGGAGAAAGACAGAGATGGTTGCCCCAAGATTGTTAACCTTGGCAGTGCGA  403
            |||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  245  GTACGCAACAAGAGAAAGACAGAGATGGTTGCCCCAAGATTGTTAACCTTGGGAGTGCGA  304

Query  404  AAACCGATCTCTTCTATGAACGCAAGAAATACGGATTCAAAAAACGATGATAGTTCGGTA  463
            |||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct  305  AAACCGATCTGTTCTATGAACGTAAGAAATACGGATTCAAAAAACGATGATATTT-GGTA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5