BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30010.1
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933489 jgi|Araly1|933489|scaffold_401477.1 1845 0.0
> Ahg933489 jgi|Araly1|933489|scaffold_401477.1
Length=1230
Score = 1845 bits (999), Expect = 0.0
Identities = 1168/1247 (94%), Gaps = 22/1247 (2%)
Strand=Plus/Plus
Query 86 ttc-ttttcttcaagcgcttctttAATGGCGGCTGTTCAATGTCTCACTTTCCTCTTCTT 144
||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCTTTTTC-TCAA--GCTTCTTTAATGGCGGCTGTTCAATGTCTCACTTTCCTCTTCTT 57
Query 145 GTTTCTTCTCCAAAACGCGACGTCAGCTTCACCTCTCCCTCTCTTCCGGCGGCCGATCCA 204
||||||||||||||| || ||||||||||||||||||||| ||||||||| | | ||
Sbjct 58 GTTTCTTCTCCAAAATGCCACGTCAGCTTCACCTCTCCCTTTCTTCCGGC-G--G--CC- 111
Query 205 AAGCAACCACAGCAACTTCG-TGAAGCATCCTCGCC-GAAGTCAGGTGGTT-TTCCCGGT 261
| ||||| |||||||||| | ||||||||||||| ||| || |||| || || |||||
Sbjct 112 --G-AACCAAAGCAACTTCGCT-AAGCATCCTCGCCGGAA-TCCGGTGATTCTT-CCGGT 165
Query 262 GAATCATAGTAGTTGTGATCTGTTCGCCGGCGAGTGGGTGCGGGATGAGACTTACCCACT 321
|||||| ||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||
Sbjct 166 GAATCACAGTAGTTGTGATCTGTTCGCCGGAGAGTGGGTGCAGGATGAGACGTACCCGCT 225
Query 322 TTACCGGTCTAAAGAATGCGGCCGAGGAATCATAGATCCGGGATTCGACTGCCAGACTTA 381
||||||| |||||||||| ||| |||||||||||||||||||||| ||||| ||||| ||
Sbjct 226 TTACCGGGCTAAAGAATGTGGCGGAGGAATCATAGATCCGGGATTTGACTGTCAGACGTA 285
Query 382 CGGCAGACCTGACTCCGACTATCTCAAGTTCCGGTGGAAACCTTTCAACTGCAATGTCCC 441
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 286 CGGCAGACCTGACTCCGACTATCTCAAGTTCCGGTGGAAACCATTCAACTGCAATGTCCC 345
Query 442 TAGATTCAATGGAGTGAAGTTTCTACAAGAAATGAGAGACAAAACCATAATGTTCGTTGG 501
|||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 346 TAGATTCAATGGGGTGAAGTTTCTACAAGAAATGAGGGACAAAACGATAATGTTCGTTGG 405
Query 502 TGATTCGTTGGGTAGAAACCAATGGGAGTCGTTGATATGTATGATCTCTTCATCAGCACC 561
|||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 406 TGATTCATTGGGTAGAAACCAATGGGAGTCGTTGATCTGTATGATCACTTCATCAGCACC 465
Query 562 GTCCATTAATACTCACATCATTCATGAAGATCCTCTCTCTACCTTCAAGATCCTTGACTA 621
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 466 GTCCATTAATACACACATCATTCATGAAGATCCTCTCTCTACCTTCATGATCCTTGACTA 525
Query 622 CAACGTGAAGGTATCATTCTATAGAGCTCCTTATCTTGTAGACATCGACAAAATTAACGG 681
||||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 526 CAACGTGAAAGTGTCATTCTATAGAGCTCCTTATCTTGTAGACATAGACAAAATTCACGG 585
Query 682 AAAGACAACTCTTAAACTCGACGAAATCTCTGTGGATGCATCGAATGCTTGGCGCACAGC 741
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 586 AAAGACAACTCTTAAACTCGACGAAATCTCTGTCGATGCATCGACCGCTTGGCGCACAGC 645
Query 742 CGACGTTCTATTGTTCAACACTGGTCACTGGTGGAGCCACACAGGTTCTTTACGAGGGTG 801
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 646 CGACGTTCTATTGTTCAACACTGGTCACTGGTGGAGCCACACAGGGTCTTTACGAGGGTG 705
Query 802 GGAGCAGATGGAGACAGGTGGGAGATATTACGGCGACATGGATAGGTTAGTGGCGTTGAG 861
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 706 GGAGCAGATGGAGACAGGAGGGAGATATTACGGCGACATGGATAGGTTAGTGGCGTTGAG 765
Query 862 AAAAGGACTAGGAACGTGGTCTAGTTGGGTCCTTCGTTATATCAATTCTCCTCTCACTAG 921
|||||||||| |||| |||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 766 AAAAGGACTAAGAACATGGTCTGGTTGGGTCCTTCGTTATATCAATTCGCCTCTCACTAG 825
Query 922 AGTTTTCTTCCTCTCGGTCTCACCCACACACTACAACCCAAATGAGTGGACTTCAAGATC 981
||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 826 AGTTTTCTTCCTCTCCGTCTCACCCACACACTACGACCCAAATGAGTGGACTTCAAGATC 885
Query 982 AAAAACTTCAACAATAACTCAAGGAGGTAAAAGCTGCTACGGACAAACGACACCGTTTAG 1041
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 886 AAAAACTTCAACGATAACTCAAGGAGCTAAAAGCTGCTACGGACAAACGACACCGTTTAG 945
Query 1042 TGGAACAACGTATCCAACAAGTTCATACGTGAACCAGAAGAAAGTGATAGACGACGTGGT 1101
||||||| |||||||||||||||| ||||| ||||| |||||||| || |||||||||||
Sbjct 946 TGGAACATCGTATCCAACAAGTTCTTACGTAAACCAAAAGAAAGTTATTGACGACGTGGT 1005
Query 1102 TAAAGAGATGAAGTCTCATGTCTCATTGATGGATATAACTATGCTCTCTGCTCTTCGTGT 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1006 TAAAGAGATGAAGTCTCATGTCTCATTGATGGATATAACTATGCTCTCTGCTCTTCGCGT 1065
Query 1162 CGACGGTCATCCTTCGATATATAGTGGAGATCTCAACCCTTCTTTGAAAAGAAATCCTGA 1221
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1066 CGACGGTCATCCTTCGATATATAGTGGAGATCTCAACCCTTCTTTTAAAAGAAATCCTGA 1125
Query 1222 CCGTTCATCTGATTGTAGCCATTGGTGTCTTCCGGGTCTTCCC-GACACTTGGAACCAAT 1280
|||||| |||||||||||||||||||||||||| ||||| ||| || || ||||||||||
Sbjct 1126 CCGTTCTTCTGATTGTAGCCATTGGTGTCTTCCTGGTCT-CCCTGATACGTGGAACCAAT 1184
Query 1281 TGTTTTATGCTGCTTTGTTGTACTGAAGATTTGATTAACCAAGATCA 1327
|||||||||||||||||||||| | || |||||||||||||||||||
Sbjct 1185 TGTTTTATGCTGCTTTGTTGTATT-AATATTTGATTAACCAAGATCA 1230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5