BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30020.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1 2052 0.0
> Ahg481911 jgi|Araly1|481911|fgenesh2_kg.4__971__AT2G30020.1
Length=1405
Score = 2052 bits (1111), Expect = 0.0
Identities = 1314/1411 (93%), Gaps = 17/1411 (1%)
Strand=Plus/Plus
Query 3 AAATCGAAATCAAAATATAGAAACGATGTCTTGCTCCGTCGCCGTATGTAATTCTCCGGT 62
||||||||||| ||| |||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1 AAATCGAAATCGGAATCTAGAAACGATGTCTTGTTCCGTCGCCGTTTGTAATTCTCCGGT 60
Query 63 GTTTTCACCGTCGTCTTCTCTATTCTGCAACAAATCTTCGATTCTCTCGTCACCGCAAGA 122
||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 61 GTTTTCACCGTCGTCGTCTCTATTCTGCAACAAAGCTTCGATTCTCTCTTCACCGCAAGA 120
Query 123 ATCTCTTTCTCTAACGCTTTCTCATCGCAAACCTCAGACCTCTTCTCCTTCCTCTCCATC 182
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 121 ATCTCTTTCTCTAACTCTTTCTCATCGCAAACCTCAAACCTCTTCTCCTTCCTCTCCTTC 180
Query 183 CACCACCGTTTCTTCTCCTAAATCTCCATTTCGTCTCCGTTTCCAGAAACCTCCGTCCGG 242
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 181 CACCACCGTTTCTTCTCCTAAATCGCCGTTTCGTCTCCGTTTCCAGAAACCTCCGTCCGG 240
Query 243 ATTCGCTCCTGGTCCATTATCTTTTGGATCTGAATCTGTTTCTGCATCCTCTCCTCCGGG 302
||||||||||| ||| ||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 241 ATTCGCTCCTGCTCCGTTATCGTTTGGATCTGAGTCTGTTTCTGCATCGTCTCCTCCGGG 300
Query 303 AGGTGTTTTAAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATT 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGTGTTTTGAAGAGGAAACGACCTACAAGGCTTGATATACCGATTGGTGTTGCTGGATT 360
Query 363 TGTAGCTCCGATTTCTTCATCGGC--C-GCTGTGGCTGCGACGCCgagagaggagtgtag 419
||||||||||||||| || |||| | ||||||||||| |||||||| |||||| ||||
Sbjct 361 TGTAGCTCCGATTTCGTCGGCGGCGGCGGCTGTGGCTGCAACGCCGAGGGAGGAGAGTAG 420
Query 420 agaggttgagagagaAGGTGATGGTTATTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGC 479
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 421 AGAGGTTGAGAGAGAAGGTGATGGTTACTCTGTTTATTGTAAGAGAGGAAGAAGAGAAGC 480
Query 480 TATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGAT-TT 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 TATGGAGGATCGTTTCTCTGCTATCACCAATCTTCATGGAGATCGTAAACAGGCGATATT 540
Query 539 TCGGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCAGCTAAGAACTTAG 598
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 T-GGAGTCTATGATGGTCATGGAGGAGTTAAAGCGGCTGAGTTTGCGGCTAAGAACTTAG 599
Query 599 ATAAGAACATTGTAGAAGAAGTAGTTGGTA-AGAGAGACGAGTCTGAGATAGCTGAAGCG 657
|||||||||||||||||||| |||||||| | ||||||||||||||| ||||||| |||
Sbjct 600 ATAAGAACATTGTAGAAGAAATAGTTGGTTTA-AGAGACGAGTCTGAGGTAGCTGACGCG 658
Query 658 GTGAAACATGGTTACTTGGCAACAGACGC-GTCGTTTCTTAAGGAGGAAGACGTTAAGGG 716
||||||| ||||||||| |||||||||| | |||||||||||||| |||| || |||||
Sbjct 659 GTGAAACGCGGTTACTTGACAACAGACGCAG-CGTTTCTTAAGGAGAAAGATGTCAAGGG 717
Query 717 TGGTTCATGCTGTGTCACGGCTCTGGTTAACGAAGGGAACCTTGTTGTGTCTAACGCCGG 776
|||||| ||||||||||||||| |||||| |||||||||||||||||||||||| |||||
Sbjct 718 TGGTTCGTGCTGTGTCACGGCTTTGGTTAGCGAAGGGAACCTTGTTGTGTCTAATGCCGG 777
Query 777 TGACTGTCGTGCTGTTATGAGTGTAGGAGGTGTAGCTAAGGCTTTATCTTCTGATCACCG 836
||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 778 TGACTGTCGCGCTGTTATGAGTGTAGGAGGTGTGGCTAAGGCTCTATCTTCTGATCACCG 837
Query 837 CCCGTCTAGAGACGATGAACGGAAAAGAATTGAAACCACGGGAGGATATGTTGATACGTT 896
|||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 838 TCCGTCTAGAGACGACGAAAGGAAAAGAATTGAAACCACGGGTGGATATGTTGATACGTT 897
Query 897 TCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCAAGAGGAATTGGAGATGCTCA 956
||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 898 TCACGGTGTTTGGAGAATCCAGGGATCTTTAGCTGTGTCGAGAGGGATCGGAGATGCTCA 957
Query 957 ACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATTTCGAGAATCGAGCATGACCA 1016
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 958 ACTTAAGAAATGGGTTATAGCTGAACCAGAGACAAAGATCTCGAGAATTGAGCAGGACCA 1017
Query 1017 TGAGTTTTTGATCTTGGCATCTGATGGTTTATGGGATAAAGTGAGTAACCAAGAAGCAGT 1076
|||||| ||||||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct 1018 TGAGTTCTTGATCTTGGCGTCAGATGGTTTATGGGATAAGGTGAGTAACCAAGAAGCAGT 1077
Query 1077 AGACATTGCTCGTCCTCTC-TGCTTAGGAACCGAGAAGCCATTGTTGTTAGCTGCCTGTA 1135
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 1078 AGACATTGCTCGTCC-CTTATGCTTAGGAACCGAGAAGCCATTGTTGTTAGCAGCCTGTA 1136
Query 1136 AGAAGCTTGTCGATTTATCTGCTTCACGAGGCTCGTCTGATGATATCAGTGTGATGTTGA 1195
|||||||||||||| | || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1137 AGAAGCTTGTCGATCTCTCGGCTTCACGAGGCTCGTCGGATGATATCAGTGTGATGTTGA 1196
Query 1196 TCCCTTTACGCCAGTTCATATAGAAAA-GAGAGGCATCTTAGAAGATTTTAGATATATGA 1254
||||||| ||||||||| ||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 1197 TCCCTTTGCGCCAGTTCGTATAGAAGATGAGTGGCATCTTAGAAGATTTTAGATATATGA 1256
Query 1255 TAAACGTTAGAAATTTGGAGGTTTTATATGATTTAGTTCTTTTGTTTAACTT-GATCCAT 1313
||| |||||||| |||||||||||| | ||||||||||||||| |||||||| ||| |||
Sbjct 1257 TAA-CGTTAGAACTTTGGAGGTTTTCTGTGATTTAGTTCTTTT-TTTAACTTTGATTCAT 1314
Query 1314 TCATTTATTTATTCTTTCTAACTTAGTGAACAAA-GCTAAACTCAT-TGTGGCTTATGAT 1371
|||||||||||||||||||||||||||||| ||| |||||| | | ||| || ||||||
Sbjct 1315 TCATTTATTTATTCTTTCTAACTTAGTGAAAAAAAGCTAAATTTAAATGTAGCCTATGAT 1374
Query 1372 TACTTGTATGATTCGAGCATTGGCCGAAATT 1402
||||||||||||||||||||| | |||||||
Sbjct 1375 TACTTGTATGATTCGAGCATTTGTCGAAATT 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5