BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G30032.1

Length=126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg933491 jgi|Araly1|933491|scaffold_401479.1                        204    1e-52


> Ahg933491 jgi|Araly1|933491|scaffold_401479.1
Length=226

 Score =  204 bits (110),  Expect = 1e-52
 Identities = 121/126 (96%), Gaps = 2/126 (2%)
 Strand=Plus/Plus

Query  2    TGTTACGAAAA-ATTATTTTATTTGTTTGCTTCTGGGAAGATCTCTGCCCTTCCGTGAAC  60
            |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  79   TGTTAC-AAAATTTTATTTTATTTGTTTGCTTCTGGGAAGATCTCTGCCCTTCCGTGAAC  137

Query  61   GTGAAGTACTATATTAACGGTCCACCACTTGTATGGATATCCTTTAGATTAGAATCCAAA  120
            |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct  138  GTGAAGTACTATATTAACGGTCTACCACTTGTATGGATATCCTTTAGATTAGAGTCCAAA  197

Query  121  AAATAA  126
            ||||||
Sbjct  198  AAATAA  203



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 3974977032


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5