BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30050.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481915 jgi|Araly1|481915|fgenesh2_kg.4__975__AT2G30050.1 1862 0.0
> Ahg481915 jgi|Araly1|481915|fgenesh2_kg.4__975__AT2G30050.1
Length=1258
Score = 1862 bits (1008), Expect = 0.0
Identities = 1179/1260 (94%), Gaps = 17/1260 (1%)
Strand=Plus/Plus
Query 37 CTTAGCGTTTCCTTCTCCGGCGATATTCTTCTTCTTCGGCTCACATTGCATCGTCTCTCA 96
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 1 CTTAGCGTTTCCTTCTCCGGCGATCTTCTTCTTCTTCGACTCACATTGCATCGTCTCTCA 60
Query 97 CTCGATCCTTCGTTCTTTCAGGGACAATCATTTCGGAAACATGCCAGGTCAGAAGATTGA 156
|||||||| |||| | |||||||||| |||||| |||||||||||||| |||||||||||
Sbjct 61 CTCGATCCGTCGTGCGTTCAGGGACACTCATTTTGGAAACATGCCAGGCCAGAAGATTGA 120
Query 157 AACGGGTCATGAGGACATTGTCCATGATGTGCAGATGGATTACTATGGAAAGCGAATTGC 216
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 121 AACGGGTCATGAGGACATTGTCCATGATGTCCAAATGGATTACTATGGAAAGCGAATTGC 180
Query 217 AACTGCATCATCTGACTGCACCATCAAGATAACCGGTGTCAGCAACAACGGTGGATCGCA 276
|||||| |||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 181 AACTGCCTCATCTGACTGCACCATCAAGATAACTGGCGTTAGCAACAACGGTGGATCGCA 240
Query 277 GCAACTAGCCACATTAACCGGCCACCGTGGTCCTGTCTGGGAAGTCGCGTGGGCACACCC 336
|| |||||| |||||||| || ||||||||||| |||||||| |||||||||||||||||
Sbjct 241 GCCACTAGCTACATTAACTGGGCACCGTGGTCCAGTCTGGGAGGTCGCGTGGGCACACCC 300
Query 337 -AAAGTATGGATCAATCCTTGCTTCATGCTCCTATGATGGTCAAGTCATACTCTGGAAAG 395
||| | ||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TAAA-TTTGGATCAATGCTAGCTTCATGCTCATATGATGGTCAAGTCATACTCTGGAAAG 359
Query 396 AAGGCAACCAGAACCAATGGACCCAAGATCATGTTTTCACAGACCACAAATCTTCAGTCA 455
||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 360 AAGCCAACCAGAACCAATGGACCCAAGCTCATGTCTTCACAGACCACAAATCTTCAGTCA 419
Query 456 ACTCCATTGCATGGGCTCCTCATGATATCGGACTATCCTTGGCCTGCGGGTCATCTGATG 515
|||||||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||
Sbjct 420 ACTCCATTGCATGGGCTCCTCACGATCTCGGATTATCCTTGGCTTGCGGGTCATCTGATG 479
Query 516 GCAACATTTCGGTTTTCAC-AGCCCGTGCTGACGGTGGCTGGGACACATCAAGGATTGAC 574
||||||||||||||||||| || ||||||||| ||||||||||||||| |||||||||||
Sbjct 480 GCAACATTTCGGTTTTCACAAG-CCGTGCTGATGGTGGCTGGGACACAACAAGGATTGAC 538
Query 575 CAAGCACATCCGGTTGGAGTCACTTCAGTCTCATGGGCCCCAGCCACAGCGCCTGGTGCT 634
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 CAAGCGCATCCGGTTGGAGTCACTTCAGTCTCATGGGCCCCGGCCACAGCGCCTGGTGCT 598
Query 635 CTTGTGAGCTCTGGTCTTCTCGATCCGGTTTACAAGCTAGCTTCTGGTGGATGTGATAAT 694
||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||
Sbjct 599 CTTGTGAGCTCTGGTCTGCTCGATCCTGTTTACAAGCTAGCTTCTGGTGGGTGTGATAAC 658
Query 695 ACCGTGAAAGTGTGGAAGCTCGCTAACGGGTCATGGAAGATGGATTGCTTTCCAGCTCTT 754
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 659 ACCGTGAAAGTGTGGAAACTCTCTAACGGGTCATGGAAGATGGATTGCTTTCCAGCTCTT 718
Query 755 CAAAAGCACACTGATTGGGTCCGTGATGTGGCTTGGGCACCAAACTTGGGTCTCCCCAAG 814
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 719 CAAAAGCACACTGATTGGGTCCGTGATGTGGCTTGGGCACCAAATTTGGGCCTCCCCAAG 778
Query 815 TCCACCATAGCCAGTGGTTCCCAAGATGGGAAAGTTATCATATGGACAGTGGGAAAAGAA 874
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 779 TCCACCATAGCTAGTGGTTCTCAAGATGGGAAAGTTATCATATGGACAGTGGGAAAAGAA 838
Query 875 GGTGAGCAATGGGAAGGTAAGGTTCTCAAGGACTTTATGACTCCTGTGTGGCGGGTCTCG 934
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 839 GGTGAGCAATGGGAAGGTAAGGTTCTCAAGGACTTTATGACTCCCGTGTGGCGGGTCTCA 898
Query 935 TGGTCGTTGACCGGTAACTTATTGGCCGTATCCGATGGGAACAACAACGTGACTGTGTGG 994
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 899 TGGTCGTTGACCGGTAACTTGTTGGCCGTGTCCGATGGAAACAACAACGTGACAGTGTGG 958
Query 995 AAAGAGGCTGTTGATGGAGAGTGGGAACAAGTTACTGCTGTTGAGCCTTAGGTTTTTGAT 1054
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 959 AAAGAGGCTGTTGATGGAGAGTGGGAACAAGTTACTGCTGTGGAGCCTTAGGTTTTTGAT 1018
Query 1055 GCTTTGCTATCT--CTCT--GCTCTT-CCTTTAAGGAACTGAATCAAACAT-TTTTTCTT 1108
|||||||||||| |||| |||||| ||||||||||||||||| ||||| ||||||||
Sbjct 1019 GCTTTGCTATCTATCTCTCTGCTCTTACCTTTAAGGAACTGAATTAAACACATTTTTCTT 1078
Query 1109 TACTCTTTTCTTAGTCCGGTTTGGTGG-TCTTTTTCAGGGAATGTTGAATTGGTTTTCTT 1167
|| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1079 TAATCTTTTCTTAGTCCGGTTTGGTGGGTCTTTTTGAGGGAATGTTGAATTGGTTTTCTT 1138
Query 1168 AAAG---ACTTTTGGATTAttttt-ttt--CTTATTCTTTTCATAGACACCATTTTAAAA 1221
||| ||||||||||| ||||| ||| ||| ||||||||||||| |||| |||||||
Sbjct 1139 AAAATTCACTTTTGGATTTTTTTTCTTTTTCTTTTTCTTTTCATAGAGACCACTTTAAAA 1198
Query 1222 TTCTAAAAACCAAGATCTTCATGATATATAGTTTGTCTCTTCATTTGATTTTCTTTTTTC 1281
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1199 TTCGAAAAACCGAGATCTTCATGATATATAGTTTGTCTCTTCATTTGATTTTCTTCTTTC 1258
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5