BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30060.1
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933494 jgi|Araly1|933494|scaffold_401482.1 1042 0.0
Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578 619 1e-176
> Ahg933494 jgi|Araly1|933494|scaffold_401482.1
Length=703
Score = 1042 bits (564), Expect = 0.0
Identities = 647/686 (94%), Gaps = 10/686 (1%)
Strand=Plus/Plus
Query 108 TTGA-TTTGACACTATGGCGAGCATTAGCAACGAGCCCGAGCGTGAGAACAGAGACGAAG 166
|||| ||| | || ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 7 TTGATTTTAATACGATGGCGAGCATTAGCAACGAGCCAGAGCGTGAGCACAGAGACGAAG 66
Query 167 AAGAGACTGGAGCCAACGAAGATGAAGACACCGGTGCTCAGGTTGCTCCTATCGTCAGGC 226
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 67 AAGAGACTGGAGCCAACGAAGATGAAGACACCGGTGCTCAGGTTGCTCCAATCGTCAGGC 126
Query 227 TTGAAGAAGTCGCCGTCACCACCGGTGAAGAAGACGAAGACACCATCCTCGATCTGAAAT 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTGAAGAAGTCGCCGTCACCACCGGTGAAGAAGACGAAGACACCATCCTCGATCTGAAAT 186
Query 287 CGAAGTTGTATCGATTTGATAAAGATGGAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTG 346
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 CGAAGTTGTATCGATTCGATAAAGATGGAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTG 246
Query 347 TTAAGTTTTTGAAACATAGAGTTTCTGGGAAGATTCGTCTCGTTATGAGGCAATCGAAAA 406
||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 247 TTAAGTTCTTAAAACATAGAGTTTCTGGGAAGATTCGTCTTGTTATGAGGCAATCGAAAA 306
Query 407 CTTTGAAGATCTGTGCTAATCATCTTGTTGGATCGGGTATGAGTGTTCAGGAACACGCTG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 CTTTGAAGATCTGTGCTAATCATCTTGTTGGATCGGGTATGAGTGTTCAGGAACACGCTG 366
Query 467 GGAATGATAAGTCTTGTGTATGGCACGCTCGTGATTTCTCCGATGGTGAATTGAAGGATG 526
||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||
Sbjct 367 GGAATGATAAGTCTTGTGTTTGGCACGCTCTTGATTTCTCCGATGGAGAATTGAAGGATG 426
Query 527 AGCTCTTCTGTATCCGGTTTGCTTCAGTTGAGAATTGCAAAGCATTTATGCAAAAGTTCA 586
|||| ||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 427 AGCTATTCTGTATCCGTTTTGCTTCAGTTGAGAACTGCAAAGCTTTTATGCAAAAGTTCA 486
Query 587 AGGAAGTAGCTGAATCTGAAGAAGAGAAAGAAGAGAGCAAAGATGCCTCTGATACCGCTG 646
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 487 AGGAAGTAGCTGAATCTGAAGAAGAGAAAGAAGAGAGCAAAGACGCCTCTGATACCGCTA 546
Query 647 GTCTTCTTGAGAAGTTAACAGTggaagagaaggaaagtgagaagaaaccagtggagaagg 706
|||||||||||||||||||||||||||||||| ||| ||| ||||||||| |||||| |
Sbjct 547 GTCTTCTTGAGAAGTTAACAGTGGAAGAGAAGAAAACCGAGGAGAAACCAGCGGAGAAAG 606
Query 707 cagaggaaaac-a--aaaa---ga-g--tgaagCTGTTGAAGAAAAGAAAACAGAGGAGT 757
|||||||||| | |||| || | |||||||||||| |||||||||||||||||||
Sbjct 607 CAGAGGAAAAGGAGGAAAACAAGAAGAGTGAAGCTGTTGACGAAAAGAAAACAGAGGAGT 666
Query 758 CTGTTCCCTCAGCTTAAGATGCATGC 783
||||| ||||| ||||||||||||||
Sbjct 667 CTGTTACCTCAACTTAAGATGCATGC 692
> Ahg334013 jgi|Araly1|334013|fgenesh1_pg.C_scaffold_1000578
Length=2118
Score = 619 bits (335), Expect = 1e-176
Identities = 477/546 (87%), Gaps = 8/546 (1%)
Strand=Plus/Plus
Query 135 CAACGAGCCCGAGCGTGAGAACAGAGACGAAGAAGAGACTGGAGCCAACGAAGATGAAGA 194
|||||| ||||||| ||| |||||||||| |||||| | ||||| ||||| ||||| ||
Sbjct 1440 CAACGAACCCGAGCACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGAGGATGAGGA 1499
Query 195 CACCGGTGCTCAGGTTGCTCCTATCGTCAGGCTTGAAGAAGTCGCCGTCACCACCGGTGA 254
|||||| |||||||| ||||| ||||| |||||||| || || |||||||| ||||| ||
Sbjct 1500 CACCGGAGCTCAGGTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCACTACCGGCGA 1559
Query 255 AGAAGACGAAGACACCATCCTCGATCTGAAATCGAAGTTGTATCGATTTGATAAAGATG- 313
|||||||||||| || |||||||||||||||| ||| ||||||| || ||||| ||||
Sbjct 1560 GGAAGACGAAGACGCCGTCCTCGATCTGAAATCAAAGCTGTATCGGTTCGATAAGGATGC 1619
Query 314 GAAGTCAGTGGAAGGAGAGAGGTGCTGGTACTGTTAAGTTTTTGAAA-CATAGAGTTTCT 372
||| ||||||||| |||||||| ||||||||||| ||| | || ||| |||| | ||
Sbjct 1620 GAA-TCAGTGGAAAGAGAGAGGAGCTGGTACTGTCAAGCTCTT-AAAGCATAAAAACACT 1677
Query 373 GGGAAGATTCGTCTCGTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCATCTT 432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1678 GGGAAGATTCGTCTCGTTATGAGGCAATCGAAAACTTTGAAGATCTGTGCTAATCA-CTT 1736
Query 433 -GTTGGATCGGGTATGAGTGTTCAGGAACACGCTGGGAATGATAAGTCTTGTGTATGGCA 491
||| |||||| |||||||||||||| |||| ||||||||| ||||| ||||| |||||
Sbjct 1737 CGTTAAATCGGGCATGAGTGTTCAGGAGCACGTTGGGAATGAAAAGTCATGTGTGTGGCA 1796
Query 492 CGCTCGTGA-TTTCTCCGATGGTGAATTGAAGGATGAGCTCTTCTGTATCCGGTTTGCTT 550
||||||||| ||| | ||||||||| | ||||||||||| ||||||||| | |||||||
Sbjct 1797 CGCTCGTGACTTT-GCTGATGGTGAACTCAAGGATGAGCTTTTCTGTATCAGATTTGCTT 1855
Query 551 CAGTTGAGAATTGCAAAGCATTTATGCAAAAGTTCAAGGAAGTAGCTGAATCTGAAGAAG 610
|| |||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1856 CAATTGAGAATTGCAAAACATTTATGCAAAAGTTCAAGGAAGTTGCTGACTCTGAAGAAG 1915
Query 611 AGAAAGAAGAGAGCAAAGATGCCTCTGATACCGCTGGTCTTCTTGAGAAGTTAACAGTgg 670
|||||||||||||||||||||||||||| || ||||||||||||||||| || || ||||
Sbjct 1916 AGAAAGAAGAGAGCAAAGATGCCTCTGACACTGCTGGTCTTCTTGAGAAATTGACTGTGG 1975
Query 671 aagaga 676
||||||
Sbjct 1976 AAGAGA 1981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42583298289
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5