BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30070.1
Length=2403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481917 jgi|Araly1|481917|fgenesh2_kg.4__977__AT2G30070.1 3609 0.0
> Ahg481917 jgi|Araly1|481917|fgenesh2_kg.4__977__AT2G30070.1
Length=2361
Score = 3609 bits (1954), Expect = 0.0
Identities = 2215/2339 (95%), Gaps = 26/2339 (1%)
Strand=Plus/Plus
Query 66 AACTAAACTGAAATATTGCAGAGTTTTGAATACACGGCCATGAACCAATCACCATCTCTT 125
||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 43 AACTAAACTGAAATATTGC--AGTTTTGCTTACACGGCCATGAACCAATCACCATCTCTA 100
Query 126 ATCGAACAGGGTATTTCTCAACAGCATTTGAAGACTTTGTCTTGTGCCAATGTTCTTACT 185
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 101 ATCGAACAGGGTATTTCTCAACAGCATTTGAAGACTGTGTCTTGTGCCAATGTTCTCACT 160
Query 186 TTGGCTTACCAGAGTCTTGGAGTGATCTATGGTGATCTTAGTACATCGCCACTCTATGTT 245
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 161 TTGGCTTACCAGAGCCTTGGAGTGATCTATGGTGATCTTAGTACATCGCCTCTATATGTT 220
Query 246 TATAAGACCACTTTCTCTGGGAAACTAAGTCTTCATGAAGACGATGAAGAGATCTTTGGA 305
||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 221 TATAAAACCACTTTCTCTGGGAAACTAAGTCTCCATGAAAACGATGAAGAGATCTTTGGA 280
Query 306 GTGTTCTCTTTCATCTTCTGGACATTTACACTCATTGCTCTTTTTAAATACGTTTTCATT 365
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 281 GTGTTCTCTTTCATCTTCTGGACATTTACACTCATTGCTCTCTTTAAATACGTTTTCGTT 340
Query 366 GTTCTCTCAGCAGATGACAATGGAGAAGGTGGAACATTTGCGTTGTACTCGCTTCTTTGT 425
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 341 GTTCTCTCTGCAGATGACAATGGAGAAGGTGGAACATTTGCGTTGTACTCGCTTCTGTGT 400
Query 426 AGATATGCCAAGCTAAGCATTTTACCAAATCATCAAGAAATGGATGAGAAACTATCAACA 485
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 AGATATGCCAAGCTAAGGATTTTACCAAATCATCAAGAAATGGATGAGAAACTATCAACA 460
Query 486 TATGCAACGGGAAGCCCAGGAGAGACTCGGCAAAGCGCAGCGGTTAAATCATTCTTTGAG 545
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 461 TATGCAATGGGAAGCCCGGGAGAGACTCGGCAGAGCGCAGCGGTTAAATCATTCTTTGAG 520
Query 546 AAGCATCCGAAATCTCAAAAGTGTTTGTTGCTCTTTGTTCTTTTAGGGACATGTATGGCT 605
|| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 521 AAACACCCGAAATCTCAAAAGTGTTTGTTGCTCTTTGTGCTTTTAGGGACATGTATGGCT 580
Query 606 ATTGGTGATAGTGTCCTCACTCCAACAATCTCAGTTCTTTCAGCTGTTTCTGGAGTCAAA 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 ATTGGTGATAGTGTCCTCACTCCAACAATCTCAGTTCTTTCAGCTGTTTCTGGAGTCAAG 640
Query 666 CTCAAGATTCCCAACCTTCACGAGAATTATGTTGTCATCATCGCATGTATCATCTTGGTG 725
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 641 CTCAAGATTCCCAACCTTCACGAGAATTATGTTGTCATCATCGCCTGTATCATCTTGGTG 700
Query 726 GCGATATTCTCAGTCCAGCGTTATGGTACGCATAGAGTCGCCTTCATTTTCGCTCCAATC 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 701 GCGATATTCTCAGTCCAGCGTTATGGTACGCATAGAGTCGCCTTCATTTTCGCTCCAATC 760
Query 786 TCCACTGCTTGGCTTCTCTCCATCAGTAGCATTGGAGTTTACAACACTATAAAATGGAAC 845
||||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 761 TCCACCGCTTGGCTTCTCTCCATTAGCAGCATTGGAGTTTACAACACTATTAAATGGAAC 820
Query 846 CCGCGTATAGTCTCTGCGCTTTCGCCTGTTTACATGTATAAGTTCCTTAGAAGCACCGGT 905
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 821 CCGCGTATAGTCTCTGCGCTTTCGCCTGTTTACATGTATAAGTTCCTCAGAAGCACCGGT 880
Query 906 GTTGAAGGGTGGGTTTCACTTGGAGGTGTTGTTCTTTCAATCACAGGTGTTGAGACTATG 965
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 881 GTAGAAGGGTGGGTTTCACTTGGAGGAGTTGTTCTTTCAATCACTGGTGTTGAGACTATG 940
Query 966 TTTGCTGACTTAGGTCACTTCTCTTCTCTGTCCATAAAGGTGGCTTTCTCGTTCTTTGTA 1025
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 941 TTTGCTGACTTAGGTCACTTCTCATCTCTGTCCATAAAGGTGGCTTTCTCGTTCTTTGTA 1000
Query 1026 TACCCGTGTTTGATACTTGCATACATGGGTGAGGCTGCGTTTCTCTCTAAACACCATGAA 1085
||||| |||||||| ||||| || ||||| ||||||||||||||||||||||| ||||||
Sbjct 1001 TACCCATGTTTGATTCTTGCGTATATGGGCGAGGCTGCGTTTCTCTCTAAACATCATGAA 1060
Query 1086 GATATTCAGCAAAGCTTCTACAAGGCGATACCCGAGCCTGTGTTCTGGCCAGTGTTCATT 1145
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 GACATTCAGCAAAGCTTCTACAAGGCGATACCCGAGCCTGTGTTCTGGCCAGTGTTCATT 1120
Query 1146 GTGGCTACATTTGCAGCTGTGGTGGGAAGCCAAGCTGTCATATCCGCAACGTTTTCGATC 1205
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1121 GTGGCTACATTTGCAGCTGTGGTGGGAAGCCAAGCTGTCATATCCGCAACATTTTCGATC 1180
Query 1206 ATAAGTCAATGTTGTGCACTTGATTGCTTTCCTCGGGTCAAGATCATTCACACTTCAAGC 1265
||||||||||| ||||| || ||||||||||| ||||||||| |||||||||||||||||
Sbjct 1181 ATAAGTCAATGCTGTGCGCTCGATTGCTTTCCCCGGGTCAAGGTCATTCACACTTCAAGC 1240
Query 1266 AAAATACATGGACAAATCTATATCCCTGAAGTTAACTGGATGCTGATGTGTCTTTGCCTG 1325
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1241 AAAATACATGGACAAATCTATATCCCTGAAGTTAACTGGATGCTGATGTGCCTTTGTTTG 1300
Query 1326 GCGGTCACTATCGGGTTAAGAGACACTAATATGATGGGTCATGCATATGGACTTGCTGTG 1385
|||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1301 GCGGTCACAATCGGGTTAAGAGACACTAACATGATGGGTCATGCATACGGACTTGCTGTG 1360
Query 1386 ACCTCTGTGATGCTTGTGACTACATGTTTGATGACTTTAGTGATGACAATTGTCTGGAAG 1445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1361 ACCTCTGTGATGCTTGTGACTACATGTTTGATGACTTTAGTGATGACAATTGTCTGGAAG 1420
Query 1446 CAAAGAATCATTACAGTTCTCGCATTCGTTGTCTTTTTCGGTTCCATCGAGCTTCTCTAT 1505
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1421 CAAAGAATCATTACAGTTCTCGCATTCGTGGTCTTTTTTGGTTCCATCGAGCTTCTTTAT 1480
Query 1506 TTCTCGTCATGCGTCTACAAAGTACCTGAAGGAGGTTGGATTCCGATTCTCCTCTCTTTG 1565
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 1481 TTCTCTTCATGCGTCTACAAAGTACCCGAAGGAGGTTGGATCCCGATTCTCCTCTCCTTA 1540
Query 1566 ACATTCATGGCGGTAATGTACATATGGAACTACGGAACTACAAAGAAACATGAATTCGAC 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 ACATTCATGGCGGTAATGTACATATGGAACTACGGAACTACAAAGAAACATGAATTCGAC 1600
Query 1626 GTTGAGAACAAGGTCTCGATGGACCGGATAGTTTCTCTAGGACCAAGCATAGGAATGGTT 1685
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1601 GTTGAGAACAAGGTCTCGATGGACCGGATAGTTTCTCTAGGACCGAGCATAGGAATGGTG 1660
Query 1686 AGAGTTCCAGGAATAGGACTGGTCTATTCGAATCTTGTGACGGGAGTTCCAGCTGTTTTC 1745
|||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1661 AGAGTTCCCGGAATAGGACTAGTCTACTCGAATCTTGTGACGGGAGTTCCAGCTGTTTTC 1720
Query 1746 GGACATTTCGTGACGAATCTGCCTGCGTTTCACAAGATTCTAGTGTTTGTATGTGTGAAG 1805
|||||||||||||||||| |||| || |||||||||||||| |||||||||||||||||
Sbjct 1721 GGACATTTCGTGACGAATTTGCCGGCATTTCACAAGATTCTGGTGTTTGTATGTGTGAAA 1780
Query 1806 TCAGTTCAGGTTCCTTATGTTGGAGAAGAAGAGAGGTTTGTGATAAGCAGAGTAGGGCCA 1865
|| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1781 TCGGTTCAGGTTCCCTATGTTGGAGAAGAAGAGAGATTTGTGATAAGCAGAGTAGGGCCA 1840
Query 1866 AAAGAGTATGGAATGTTTAGAAGTGTGGTTAGGTATGGATACAGAGATGTTCCTAGAGAA 1925
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1841 AAAGAGTATGGAATGTTTAGAAGTGTGGTTAGATATGGATACAGAGATGTTCCAAGAGAA 1900
Query 1926 ATGTATGACTTCGAAAGCCGGTTAGTATCTGCAATAGTCGAATTCGTTGAAACCGAACCG 1985
|||||||| ||||||||||||||||| ||||| |||||||| ||||||||||| ||||||
Sbjct 1901 ATGTATGATTTCGAAAGCCGGTTAGTGTCTGCTATAGTCGAGTTCGTTGAAACAGAACCG 1960
Query 1986 GGACTTGAAGAAGAAGAAATGTCGAGTGTTCGGAGAAAGAAAGAGGAATGTATGGAGATA 2045
||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||
Sbjct 1961 GGACTTGAAGAAGAAGAAATGTCGAATGTTAGGAGAAAGAAGGAGGAATGTATGGAGATA 2020
Query 2046 ATGGAAGCGAAAGAAGCTGGAGTAGCGTATATACTGGGACATTCATACGCAAAGGCGAAG 2105
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2021 ATGGAAGCGAAAGAAGCAGGAGTCGCGTATATACTGGGACATTCATACGCAAAGGCGAAG 2080
Query 2106 CAATCATCGTCGGTGTTGAAGAAACTAGCAGTGAATGTTGTATTTGCGTTCATGAGCACG 2165
||||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct 2081 CAATCATCGTCGGTGTTGAAGAAGCTAGCGGTGAATGTCGTGTTTGCGTTCATGAGCACA 2140
Query 2166 AATTGCAGAGGAACAGATGTTGTGCTTAATGTTCCTCACACTTCTCTGCTTGAAGTTGGA 2225
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2141 AATTGCAGAGGAACAGATGTTGTGCTTAATGTTCCTCATACTTCTCTGCTTGAAGTTGGA 2200
Query 2226 ATGGTTTATTACGTCTAAACAGAG-TAATACTTAGCTTTAGCATAAGATCAGTACAGTTT 2284
|||||||||||||||||||||||| || |||| ||||||| | || || |||
Sbjct 2201 ATGGTTTATTACGTCTAAACAGAGATA-TACTAAGCTTTA--A------CA-TA-AGT-- 2247
Query 2285 TTAGTAGTAGTACAGTATATAAGAGAGCTCTAACTTCATTTTCAGTTGTTTT---AGCAG 2341
|||||||||||| |||| | ||||| |||||||||||||||||||||||| ||||
Sbjct 2248 --AGTAGTAGTACACTATAGA-GAGAGATCTAACTTCATTTTCAGTTGTTTTTTTAGCA- 2303
Query 2342 AGAAGTTT-AATGTGTAAATATACTTACAGTTAATGAA-GGAAAATGAAGAAATGATAA 2398
| |||||| ||||||||||||||||||| ||| ||||| ||||||| ||||||||||||
Sbjct 2304 A-AAGTTTTAATGTGTAAATATACTTACGGTTCATGAATGGAAAATCAAGAAATGATAA 2361
Score = 78.7 bits (42), Expect = 2e-13
Identities = 42/42 (100%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1 ACATTATTATATTCTCTCTGTTTCTTCCAATCCAATCCAAtc 42
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACATTATTATATTCTCTCTGTTTCTTCCAATCCAATCCAATC 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90540512365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5