BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30080.1
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320761 jgi|Araly1|320761|fgenesh1_pm.C_scaffold_4000818 1517 0.0
> Ahg320761 jgi|Araly1|320761|fgenesh1_pm.C_scaffold_4000818
Length=1008
Score = 1517 bits (821), Expect = 0.0
Identities = 962/1027 (94%), Gaps = 22/1027 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTGCGTCACCGGAACAGAGGCAGCAATCA-GAGCAGCGGCATGTAGAGACGG 59
||||||||||||||||||||||||||||| || || | |||| ||||| |||||||||||
Sbjct 1 ATGGCTTCTTGCGTCACCGGAACAGAGGCGGCGAT-ACGAGCCGCGGCTTGTAGAGACGG 59
Query 60 CGAAGAAGCCTCTCATCTAAAGATAGTCGCCGTCTTCGCCATCTTTCTCACAAGCGTTTT 119
||| | ||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 60 CGACGCAGCCTCTCATCTAAAGATAGTCGCCGTCTTCGCCATCTTTCTCACTAGTGTTTT 119
Query 120 CGGAGTTTGGGGACCAGTTTTACTCGCTAAATACTTTCATGGTAAACCTCTGTACGATAA 179
||| ||||||||||| ||| ||||||||||||||||||| |||||| |||| ||||||||
Sbjct 120 CGGTGTTTGGGGACCGGTTATACTCGCTAAATACTTTCACGGTAAATCTCTCTACGATAA 179
Query 180 AGCAATTCTTGTGATAAAGTGTTTCGCCGCCGGCGTGATTCTCTCGACGTCTTTAGTCCA 239
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 180 AGCGATTCTTGTGATAAAGTGTTTCGCCGCCGGCGTTATTCTCTCGACGTCTTTAGTCCA 239
Query 240 CGTTTTACCGGAAGCGTTTGAGTCACTCGCTGATTGCCAAGTGTCGTCACGTCATCCATG 299
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 CGTGTTACCGGAAGCATTTGAGTCACTCGCTGATTGCCAAGTGTCGTCACGTCATCCGTG 299
Query 300 GAAAGATTTTCCGTTTGCTGGTTTAGTTACGATGATCGGAGCTATAACGGCTTTGTTGGT 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GAAAGATTTTCCGTTTGCTGGTTTGGTTACGATGATCGGAGCTATAACGGCTTTGTTGGT 359
Query 360 TGATTTAACGGCGAGTGAACATATGGGACACggtggtggtggtggtggtgACGGAGGGAT 419
||||||||||||||||||||||||||||||| |||||||||||| | | ||||| ||
Sbjct 360 TGATTTAACGGCGAGTGAACATATGGGACAC---GGTGGTGGTGGT-G-G-CGGAGAAAT 413
Query 420 GGAGTATATGCCGGTGGGTAAGGCGGTTGGAGGGTTAGAAATGAAAGAAGGAAAGTGTGG 479
|||||||| | ||||||||| ||||||||||||||||||||||||| |||
Sbjct 414 GGAGTATA----------T--GGCGGTTGGGGGGTTAGAAATGAAAGAAGGAAAGTTTGG 461
Query 480 GGCTGATTTGGAAATACAAGAAAATAGTGAGGAGGAAATTGTGAAGATGAAACAAAGATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 GGCTGATTTGGAAATACAAGAAAATAGTGAGGAGGAAATTGTGAAGATGAAACAAAGATT 521
Query 540 AGTGTCACAAGTTCTTGAAATAGGGATTATATTTCATTCGGTGATAATTGGAGTAACAAT 599
||||||||||||||||||||| ||||| |||||||||||| |||| ||||||||||| |
Sbjct 522 AGTGTCACAAGTTCTTGAAATTGGGATAATATTTCATTCGATGATTATTGGAGTAACTTT 581
Query 600 GGGAATGTCACAAAATAAGTGTACCATTAGACCTTTGATTGCTGCGCTTTCTTTTCATCA 659
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 582 GGGAATGTCACAAAATAAGTGTACCATTAGACCTTTGATTGCTGCACTTTCGTTTCATCA 641
Query 660 GATTTTTGAAGGTTTGGGTCTTGGTGGTTGCATTGCTCAGGCTGGGTTTAAGGCAGGGAC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GATTTTTGAAGGTTTGGGTCTTGGTGGTTGCATTGCTCAGGCTGGGTTTAAGGCAGGGAC 701
Query 720 AGTGGTGTATATGTGCTTAATGTTCGCGGTAACAACGCCACTCGGGATTGTACTAGGGAT 779
|||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 702 AGTGGTTTATATGTGCTTGATGTTCGCGGTAACGACGCCTCTCGGGATTGTACTAGGGAT 761
Query 780 GGTGATATTTGCAGCGACCGGGTACGATGATCAGAACCCGAACGCATTGATAATGGAGGG 839
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 762 GGTGATATTTGCAGCGACCGGATACGATGATCAGAACCCGAATGCATTGATAATGGAGGG 821
Query 840 TTTATTGGGATCATTCTCTTCAGGTATTCTAATATACATGGCCTTGGTTGACCTAATTGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 822 TTTATTGGGATCATTCTCTTCAGGTATTCTAATATACATGGCCTTGGTTGATCTAATTGC 881
Query 900 ATTGGATTTCTTCCATAACAAGATGCTGACGACTTGC-GGTGAATCGGGTTCTCGCCTCA 958
||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||
Sbjct 882 ATTGGATTTCTTCCATAACAAGATGTTGACGACA-GCCGGTGAATCGGGTTCTCGGCTCA 940
Query 959 AGAAGCTTTGTTTTGTGGCTTTGGTTTTAGGTTCTGCCTCTATGTCACTACTTGCTCTTT 1018
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 AGAAGCTCTGTTTTGTGGCTTTGGTTTTAGGTTCTGCCTCTATGTCACTACTTGCTCTTT 1000
Query 1019 GGGCTTA 1025
|||||||
Sbjct 1001 GGGCTTA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38161039917
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5