BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30090.1
Length=1161
Score E
Sequences producing significant alignments: (Bits) Value
Ahg900781 jgi|Araly1|900781|Al_scaffold_0004_1431 1611 0.0
Ahg952264 jgi|Araly1|952264|scaffold_50000001.1 326 3e-88
> Ahg900781 jgi|Araly1|900781|Al_scaffold_0004_1431
Length=1077
Score = 1611 bits (872), Expect = 0.0
Identities = 1014/1083 (94%), Gaps = 8/1083 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGGGCAATGGGAAGAAGAAGTTGATGAAGAGGTGGTGATCAGATGCTACGATGAT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGGGCAATGGGAGGAAGAAGTTGATGAAGAGGTGGTGATCAGATGCTACGATGAT 60
Query 61 CGTAGGGACAGAATTCAAATGGGTCGTATGGAGAAGAGTTGTGAGATTGGTCACGACCAC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AGTAGGGACAGAATTCAAATGGGTCGTGTGGAGAAGAGTTGTGAGATTGGTCACGACCAA 120
Query 121 CAAACTCTTCTCTTCACTGACACTTTAGGTGATCCCATCTGCAGAATCCGAAATAGTCCT 180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CAAACTCTTCTCTTCACAGACACTTTAGGCGATCCCATCTGCAGAATCCGAAATAGTCCT 180
Query 181 TTCTTCATTATGCTGGTGGCAGGGGTTGGGAACAAGCTGGTAGGTTCCATACAAGGCTCA 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTTCATTATGCTGGTGGCAGAGGTTGGGAACAAGCTGGTAGGTTCCATACAAGGCTCA 240
Query 241 GTAAAGCCAGTGGAGTTTCATGATAAGTCAGTGAGAGTGGGTTATGTCCTAGGTCTCAGA 300
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 241 GTAAAGCCAGTGGAGTTTCATGATAAGTCAGTGAGAGTTGGTTATGTTCTTGGTCTCAGA 300
Query 301 GTTGTGCCGTCGTATCGACGCCGTGGCATTGGATCGATTCTGGTGAGAAAACTTGAGGAA 360
||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 GTTGTGCCGCCGTATCGACGCCGTGGCATTGGTTCGATTCTGGTGAGAAAGCTTGAGGAA 360
Query 361 TGGTTCGAGTCTCACAATGCTGACTATGCTTACATGGCTACTGAAAAGGACAATGAGGCC 420
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 361 TGGTTCGAGTCTCACAATGCTGACTATGCTTACATGGCCACTCAAAAGGACAATGAGGCC 420
Query 421 TCTCACGGTCTCTTCATCGGGAGACTTGGCTACGTCGTCTTTAGAAACCCCGCAATCCTG 480
|||| |||||||||| |||||| ||||||||| || ||||| |||||||||||||||||
Sbjct 421 TCTCTCGGTCTCTTCGTCGGGAAACTTGGCTATGTGGTCTTCCGAAACCCCGCAATCCTG 480
Query 481 GTCAATCCCGTCAACCCCGGCCGTGGTTTAAAATTGCCTTCTGACATCGGAATAAGGAAG 540
|||||||| |||||||||||||| ||||||||||| || ||| |||| ||||||||||||
Sbjct 481 GTCAATCCTGTCAACCCCGGCCGCGGTTTAAAATTACCGTCTAACATTGGAATAAGGAAG 540
Query 541 CTAAAGGTGAAAGAAGCCGAGTCATTGTACCGGAGAAATGTGGCAGCTACGACAGAATTT 600
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 541 CTAAAGGTGAAAGAGGCCGAGTCATTGTACCGGAGATATGTAGCAGCTACGACAGAATTT 600
Query 601 TTCCCGGACGACATTAACAAAATCTTGCGGAACAAGTTAAGTATCGGGACATGGGTGGCT 660
|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 TTCCCGGAAGATATTAACAAAATCTTGCGGAACAAGTTAAGTATCGGGACATGGTTGGCT 660
Query 661 TACTACAATAATGTCGACAACACCAGAAGCTGGGCAATGCTTAGTGTTTGGGATAGTAGC 720
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACTACAATGATG---ACAACACCAGAAGCTGGGCAATGCTTAGTGTTTGGGATAGTAGC 717
Query 721 AAAGTCTTCAAACTAAGGATCGAGAGAGCTCCTTTGAGCTATTTGCTTCTCACTAAAGTT 780
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAAGTCTTCAAACTTAGGATCGAGAGAGCTCCTTTGAGCTATTTGCTTCTCACTAAAGTT 777
Query 781 TCCAAA-TTATTTGGTAA-TTTCTTGTCATTATTGGGATTAACAGTTTTGCCTGATTTGT 838
|||||| || |||||||| ||| ||||| |||||||||||||| | | |||| ||| |||
Sbjct 778 TCCAAAATT-TTTGGTAAATTT-TTGTCGTTATTGGGATTAACGGCTATGCCGGATCTGT 835
Query 839 TTACTCCGTTTGGGTTCTATTTCCTTTACGGGGTTCACTCGGAAGGTCCACATTGTGGGA 898
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 836 TTACTTCGTTTGGGTTCTATTTCCTTTATGGGGTTCACTCGGAAGGTCCACTTTGTGGGA 895
Query 899 AACTAGTTAGGGCTTTGTGTGAGCACGTTCATAACATGGCTGCGTTAAATGATGGTTGCG 958
||||||||||||||||||||||||||||||||||||||||||| | | |||| || | |
Sbjct 896 AACTAGTTAGGGCTTTGTGTGAGCACGTTCATAACATGGCTGCATCAGATGACAGTGGTG 955
Query 959 CATGTAAAGTCGTGGTGGTGGAGGTCGACAAAGGAAGTAACGGCGATGATTCTTTGCAAA 1018
| ||||| || |||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 956 CGTGTAAGGTTGTGGTGGTGGAGGTCGACAAAGGAAGTAACGGCGATGATTCTCTACAGA 1015
Query 1019 GGTGTATTCCGCATTGGAAAATGCTTTCGTGTGACGATGATATGTGGTGTATCAAGCCGT 1078
| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1016 GATGTATTCCACATTGGAAAATGCTTTCGTGTGACGATGATATGTGGTGTAT-ATGCCGT 1074
Query 1079 TGA 1081
|||
Sbjct 1075 TGA 1077
> Ahg952264 jgi|Araly1|952264|scaffold_50000001.1
Length=316
Score = 326 bits (176), Expect = 3e-88
Identities = 190/197 (96%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 1 ATGGTGGGGCAATGGGAAGAAGAAGTTGATGAAGAGGTGGTGATCAGATGCTACGATGAT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 21 ATGGTGGGGCAATGGGAGGAAGAAGTTGATGAAGAGGTGGTGATCAGATGCTACGATGAT 80
Query 61 CGTAGGGACAGAATTCAAATGGGTCGTATGGAGAAGAGTTGTGAGATTGGTCACGACCAC 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 81 AGTAGGGACAGAATTCAAATGGGTCGTGTGGAGAAGAGTTGTGAGATTGGTCACGACCAA 140
Query 121 CAAACTCTTCTCTTCACTGACACTTTAGGTGATCCCATCTGCAGAATCCGAAATAGTCCT 180
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 141 CAAACTCTTCTCTTCACAGACACTTTAGGCGATCCCATCTGCAGAATCCGAAATAGTCCG 200
Query 181 TTCTTCATTATGCTGGT 197
|||||||||||||||||
Sbjct 201 TTCTTCATTATGCTGGT 217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43307633712
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5