BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30100.1
Length=1661
Score E
Sequences producing significant alignments: (Bits) Value
Ahg933499 jgi|Araly1|933499|scaffold_401487.1 2156 0.0
Ahg952329 jgi|Araly1|952329|scaffold_5900005.1 1696 0.0
> Ahg933499 jgi|Araly1|933499|scaffold_401487.1
Length=2743
Score = 2156 bits (1167), Expect = 0.0
Identities = 1344/1428 (94%), Gaps = 17/1428 (1%)
Strand=Plus/Plus
Query 24 TTCGTTGA-CTATCTCGA-CGATTTCTCTCCGACGATTCC-TCCCCCGACTTCATCGAAA 80
|||||||| || |||| | |||||||||||||| |||||| | |||||||||||||| ||
Sbjct 50 TTCGTTGACCT-TCTC-ACCGATTTCTCTCCGAAGATTCCGT-CCCCGACTTCATCGTAA 106
Query 81 CCACAGCGTAAAACCCAATTCCCGAATCAT-A--TGCAATCTGAAACT-AAACTACTCTG 136
||||||||||||||||||||||||||||| | |||||||||||| | ||||||||| |
Sbjct 107 TCACAGCGTAAAACCCAATTCCCGAATCATCATCTGCAATCTGAAA-TCAAACTACTCCG 165
Query 137 CTGGAAAATTTCGCGAGAT--G-GGACTATCACGTTCCGTGGAGCTAGACCAATTCATCA 193
|||| |||||||| ||| | | ||| |||| ||||||||||||||||||||||||||||
Sbjct 166 CTGGGAAATTTCGTGAGCTCGGAGGATTATCTCGTTCCGTGGAGCTAGACCAATTCATCA 225
Query 194 CAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTG 253
|||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct 226 CAAGCGAGGAAGAAGAAGAAGAAGCAGAGGAAATAGGAGAAGGGTTTTTCGAAGCGATTG 285
Query 254 AGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGAT 313
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 286 AGGAATTAGAGAGGATGACTAGAGAACCATCAGATATTCTCGAAGAGATGAATCATCGAT 345
Query 314 TATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCAT 373
|||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 346 TATCTTCTCGAGAATTGCAATTGATGCTTGTCTATTTCGCACAAGAAGGTAGAGATTCTT 405
Query 374 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAA 433
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 406 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAAAATAGAGTTGATGAAGAGATAA 465
Query 434 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTA 493
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 466 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTCAAGAGGAATGTG 525
Query 494 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 585
Query 554 TTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 613
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 TTAGTATGATGGAGAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 645
Query 614 TTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTG 673
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 646 TTTTGTTTGTGAAGGAGGTTTTAAGGAGGAGAGATGGTTTTGGGTATAGTGTTGTTGGTG 705
Query 674 GTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGG 733
||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 706 GTGGT--T-CTGAAGGTAGAAAAGGTGGACCAGTTGGGTATCTTGCTTGGAAATTGATGG 762
Query 734 TTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 793
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTGATGGAGACTATAAGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 822
Query 794 AACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTC 853
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 823 AGCCAGAAGCTTATAGCTATCTAATTGCGATGACAGCAATTGTGAAAGAGCTGAATAGTC 882
Query 854 TTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTG 913
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 883 TTGGGAAGACATTACGCGAGTTGAAACGCTTTACACGGGCTGGTTTTGTTGCTGAGATCG 942
Query 914 ATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGC 973
||||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||
Sbjct 943 ATGATCATGATAGGGTACTCATTGAGAAGTACCAATCGGAAACATTATCCCGCGGACTGC 1002
Query 974 AGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCC 1033
| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1003 AATTAGCCACTTGGGCGGTTGAGGAAGGTCAAGAAAATGATTCCATAATTGGGGTGGTCC 1062
Query 1034 ATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGC 1093
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1063 ATGAGAGGCTCCTCGCAATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAAC 1122
Query 1094 TCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGG 1153
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1123 TCTGGAAGATGAAACTTGCAGGGAGAGAACCCGAAGCTGACCTCCACGACATCGTTATGG 1182
Query 1154 CGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCTCGGCTACTGACACGAGTTGAGT 1213
||||||||||||||||||||||||||||||||||||| ||||| |||||||| || ||||
Sbjct 1183 CGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCACGGCTTCTGACACGGGTGGAGT 1242
Query 1214 TCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCATGGTTGCTCAGAGGGTATGTGAAAG 1273
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 1243 TCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCTTGGTTACTCAGAGGGTATGTAAAAG 1302
Query 1274 GAGGGCACTTCGAAGAGGCTGCAGAGACATTGGTATCGATGATCGACTCTGGGTTGCATC 1333
|||||||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1303 GAGGGCACTTTGAAGAAGCTGCAGAGACACTGGTATCGATGATCGACTCTGGTTTGCATC 1362
Query 1334 CGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATCCAACGGCCGA 1393
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1363 CGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATTCAACGGCCGA 1422
Query 1394 GAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGACGCTG 1441
||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1423 GAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGATGCTG 1470
> Ahg952329 jgi|Araly1|952329|scaffold_5900005.1
Length=1222
Score = 1696 bits (918), Expect = 0.0
Identities = 1079/1155 (93%), Gaps = 17/1155 (1%)
Strand=Plus/Plus
Query 24 TTCGTTGA-CTATCTCGA-CGATTTCTCTCCGACGATTCC-TCCCCCGACTTCATCGAAA 80
|||||||| || |||| | |||||||||||||| |||||| | |||||||||||||||||
Sbjct 50 TTCGTTGACCT-TCTC-ACCGATTTCTCTCCGAAGATTCCGT-CCCCGACTTCATCGAAA 106
Query 81 CCACAGCGTAAAACCCAATTCCCGAATCAT-A--TGCAATCTGAAACT-AAACTACTCTG 136
||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||| |
Sbjct 107 CCACAGCGTAAAACCCAGTTCCCGAATCATCATCTGCAATCTGAAA-TCAAACTACTCCG 165
Query 137 CTGGAAAATTTCGCGAGAT--G-GGACTATCACGTTCCGTGGAGCTAGACCAATTCATCA 193
|||| |||||||| ||| | | ||| |||| ||||||||||||||||||||||||||||
Sbjct 166 CTGGGAAATTTCGTGAGCTCGGAGGATTATCTCGTTCCGTGGAGCTAGACCAATTCATCA 225
Query 194 CAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTG 253
|||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||||||
Sbjct 226 CAAGCGAGGAAGAAGAAGAAGAAGCAGAGGAAATAGGAGAAGGGTTTTTCGAAGCGATTG 285
Query 254 AGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGAT 313
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 286 AGGAATTAGAGAGGATGACTAGAGAACCATCAGATATTCTCGAAGAGATGAATCATCGAT 345
Query 314 TATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCAT 373
|||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 346 TATCTTCTCGAGAATTGCAATTGATGCTTGTCTATTTCGCACAAGAAGGTAGAGATTCTT 405
Query 374 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAA 433
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 406 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAAAATAGAGTTGATGAAGAGATAA 465
Query 434 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTA 493
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 466 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTCAAGAGGAATGTG 525
Query 494 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 553
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 526 ATGCACACCAAGTGTTTGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 585
Query 554 TTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 613
||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 586 TTAGTATGATGGAGAAAGTTATTGCTTTGTATTGTGAGATGGGTAAGAAAGAATCTGCGG 645
Query 614 TTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTG 673
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 646 TTTTGTTTGTGAAGGAGGTTTTAAGGAGGAGAGATGGTTTTGGGTATAGTGTTGTTGGTG 705
Query 674 GTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGG 733
||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 706 GTGGT--T-CTGAAGGTAGAAAAGGTGGACCAGTTGGGTATCTTGCTTGGAAATTGATGG 762
Query 734 TTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 793
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TTGATGGAGACTATAAGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 822
Query 794 AACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTC 853
| |||||||| || |||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 823 AGCCAGAAGCTTATAGCTATCTAATTGCGATGACAGCAATTGTGAAAGAGCTGAATAGTC 882
Query 854 TTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTG 913
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 883 TTGGGAAGACATTACGCGAGTTGAAACGCTTTACACGGGCTGGTTTTGTTGCTGAGATCG 942
Query 914 ATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGC 973
||||||| ||||||||||||||||||||||| ||||| ||||||||||| || |||||||
Sbjct 943 ATGATCATGATAGGGTACTCATTGAGAAGTACCAATCGGAAACATTATCCCGCGGACTGC 1002
Query 974 AGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCC 1033
| ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1003 AATTAGCCACTTGGGCGGTTGAGGAAGGTCAAGAAAATGATTCCATAATTGGGGTGGTCC 1062
Query 1034 ATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGC 1093
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1063 ATGAGAGGCTCCTCGCAATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAAC 1122
Query 1094 TCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGG 1153
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 1123 TCTGGAAGATGAAACTTGCAGGGAGAGAACCCGAAGCTGACCTCCACAACATCGTTATGG 1182
Query 1154 CGATCTGCGCTTCAC 1168
| |||||||||||||
Sbjct 1183 CCATCTGCGCTTCAC 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62277550575
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5