BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30100.1 Length=1661 Score E Sequences producing significant alignments: (Bits) Value Ahg933499 jgi|Araly1|933499|scaffold_401487.1 2156 0.0 Ahg952329 jgi|Araly1|952329|scaffold_5900005.1 1696 0.0 > Ahg933499 jgi|Araly1|933499|scaffold_401487.1 Length=2743 Score = 2156 bits (1167), Expect = 0.0 Identities = 1344/1428 (94%), Gaps = 17/1428 (1%) Strand=Plus/Plus Query 24 TTCGTTGA-CTATCTCGA-CGATTTCTCTCCGACGATTCC-TCCCCCGACTTCATCGAAA 80 |||||||| || |||| | |||||||||||||| |||||| | |||||||||||||| || Sbjct 50 TTCGTTGACCT-TCTC-ACCGATTTCTCTCCGAAGATTCCGT-CCCCGACTTCATCGTAA 106 Query 81 CCACAGCGTAAAACCCAATTCCCGAATCAT-A--TGCAATCTGAAACT-AAACTACTCTG 136 ||||||||||||||||||||||||||||| | |||||||||||| | ||||||||| | Sbjct 107 TCACAGCGTAAAACCCAATTCCCGAATCATCATCTGCAATCTGAAA-TCAAACTACTCCG 165 Query 137 CTGGAAAATTTCGCGAGAT--G-GGACTATCACGTTCCGTGGAGCTAGACCAATTCATCA 193 |||| |||||||| ||| | | ||| |||| |||||||||||||||||||||||||||| Sbjct 166 CTGGGAAATTTCGTGAGCTCGGAGGATTATCTCGTTCCGTGGAGCTAGACCAATTCATCA 225 Query 194 CAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTG 253 |||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||| Sbjct 226 CAAGCGAGGAAGAAGAAGAAGAAGCAGAGGAAATAGGAGAAGGGTTTTTCGAAGCGATTG 285 Query 254 AGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGAT 313 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 286 AGGAATTAGAGAGGATGACTAGAGAACCATCAGATATTCTCGAAGAGATGAATCATCGAT 345 Query 314 TATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCAT 373 |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 346 TATCTTCTCGAGAATTGCAATTGATGCTTGTCTATTTCGCACAAGAAGGTAGAGATTCTT 405 Query 374 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAA 433 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 406 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAAAATAGAGTTGATGAAGAGATAA 465 Query 434 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTA 493 ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 466 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTCAAGAGGAATGTG 525 Query 494 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 553 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 585 Query 554 TTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 613 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586 TTAGTATGATGGAGAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 645 Query 614 TTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTG 673 |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 646 TTTTGTTTGTGAAGGAGGTTTTAAGGAGGAGAGATGGTTTTGGGTATAGTGTTGTTGGTG 705 Query 674 GTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGG 733 ||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 706 GTGGT--T-CTGAAGGTAGAAAAGGTGGACCAGTTGGGTATCTTGCTTGGAAATTGATGG 762 Query 734 TTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 793 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 TTGATGGAGACTATAAGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 822 Query 794 AACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTC 853 | |||||||| || |||||||| |||||||||||||| || ||||||||||||||||||| Sbjct 823 AGCCAGAAGCTTATAGCTATCTAATTGCGATGACAGCAATTGTGAAAGAGCTGAATAGTC 882 Query 854 TTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTG 913 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 883 TTGGGAAGACATTACGCGAGTTGAAACGCTTTACACGGGCTGGTTTTGTTGCTGAGATCG 942 Query 914 ATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGC 973 ||||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||||| Sbjct 943 ATGATCATGATAGGGTACTCATTGAGAAGTACCAATCGGAAACATTATCCCGCGGACTGC 1002 Query 974 AGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCC 1033 | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1003 AATTAGCCACTTGGGCGGTTGAGGAAGGTCAAGAAAATGATTCCATAATTGGGGTGGTCC 1062 Query 1034 ATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGC 1093 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1063 ATGAGAGGCTCCTCGCAATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAAC 1122 Query 1094 TCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGG 1153 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1123 TCTGGAAGATGAAACTTGCAGGGAGAGAACCCGAAGCTGACCTCCACGACATCGTTATGG 1182 Query 1154 CGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCTCGGCTACTGACACGAGTTGAGT 1213 ||||||||||||||||||||||||||||||||||||| ||||| |||||||| || |||| Sbjct 1183 CGATCTGCGCTTCACAGAAAGAGGTTAATGCAGTTTCACGGCTTCTGACACGGGTGGAGT 1242 Query 1214 TCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCATGGTTGCTCAGAGGGTATGTGAAAG 1273 |||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||| Sbjct 1243 TCATGGGATCTCAGAGAAAGAAGAAGACTCTGTCTTGGTTACTCAGAGGGTATGTAAAAG 1302 Query 1274 GAGGGCACTTCGAAGAGGCTGCAGAGACATTGGTATCGATGATCGACTCTGGGTTGCATC 1333 |||||||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||| Sbjct 1303 GAGGGCACTTTGAAGAAGCTGCAGAGACACTGGTATCGATGATCGACTCTGGTTTGCATC 1362 Query 1334 CGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATCCAACGGCCGA 1393 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1363 CGGAGTATATTGATCGAGTGGCTGTGATGCAAGGAATGACAAGGAAGATTCAACGGCCGA 1422 Query 1394 GAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGACGCTG 1441 ||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1423 GAGATGTTGAAGCATATATGAGTCTGTGCAAGAGGCTCTTTGATGCTG 1470 > Ahg952329 jgi|Araly1|952329|scaffold_5900005.1 Length=1222 Score = 1696 bits (918), Expect = 0.0 Identities = 1079/1155 (93%), Gaps = 17/1155 (1%) Strand=Plus/Plus Query 24 TTCGTTGA-CTATCTCGA-CGATTTCTCTCCGACGATTCC-TCCCCCGACTTCATCGAAA 80 |||||||| || |||| | |||||||||||||| |||||| | ||||||||||||||||| Sbjct 50 TTCGTTGACCT-TCTC-ACCGATTTCTCTCCGAAGATTCCGT-CCCCGACTTCATCGAAA 106 Query 81 CCACAGCGTAAAACCCAATTCCCGAATCAT-A--TGCAATCTGAAACT-AAACTACTCTG 136 ||||||||||||||||| |||||||||||| | |||||||||||| | ||||||||| | Sbjct 107 CCACAGCGTAAAACCCAGTTCCCGAATCATCATCTGCAATCTGAAA-TCAAACTACTCCG 165 Query 137 CTGGAAAATTTCGCGAGAT--G-GGACTATCACGTTCCGTGGAGCTAGACCAATTCATCA 193 |||| |||||||| ||| | | ||| |||| |||||||||||||||||||||||||||| Sbjct 166 CTGGGAAATTTCGTGAGCTCGGAGGATTATCTCGTTCCGTGGAGCTAGACCAATTCATCA 225 Query 194 CAAGCGAGGAGGAAGAAGGAGAAGCAGAGGAGATAGGAGAAGGATTTTTCGAAGCGATTG 253 |||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||||||| Sbjct 226 CAAGCGAGGAAGAAGAAGAAGAAGCAGAGGAAATAGGAGAAGGGTTTTTCGAAGCGATTG 285 Query 254 AGGAACTAGAGAGGATGACTAGAGAACCATCAGATATACTCGAAGAGATGAATCATCGAT 313 ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 286 AGGAATTAGAGAGGATGACTAGAGAACCATCAGATATTCTCGAAGAGATGAATCATCGAT 345 Query 314 TATCTTCTAGAGAATTGCAATTGATGCTTGTTTACTTCGCACAAGAAGGTAGAGATTCAT 373 |||||||| |||||||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 346 TATCTTCTCGAGAATTGCAATTGATGCTTGTCTATTTCGCACAAGAAGGTAGAGATTCTT 405 Query 374 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAGAATAGAGTTGATGAAGAGATAA 433 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 406 GGTGTACTTTAGAAGTGTTTGAATGGTTGAAAAAGGAAAATAGAGTTGATGAAGAGATAA 465 Query 434 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTGAAGATGAATGTA 493 ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| Sbjct 466 TGGAGTTAATGGTTTCGATTATGTGTGGTTGGGTTAAGAAATTGATTCAAGAGGAATGTG 525 Query 494 ATGCACACCAAGTGTTCGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 553 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 526 ATGCACACCAAGTGTTTGACTTATTGATTGAGATGGATTGTGTTGGTTTAAAACCTGGTT 585 Query 554 TTAGTATGATGGACAAAGTTATTGCTTTGTATTGTGAGATGGGGAAGAAAGAAAGTGCGG 613 ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 586 TTAGTATGATGGAGAAAGTTATTGCTTTGTATTGTGAGATGGGTAAGAAAGAATCTGCGG 645 Query 614 TTTTGTTTGTCAAGGAGGTTTTAAGAAGGAGAGATGGTTTTGGTTATAGTGTTGTTGGTG 673 |||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 646 TTTTGTTTGTGAAGGAGGTTTTAAGGAGGAGAGATGGTTTTGGGTATAGTGTTGTTGGTG 705 Query 674 GTGGTGGTTCTGAAGGTAGAAAAGGTGGACCTGTTGGGTATCTTGCTTGGAAATTTATGG 733 ||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 706 GTGGT--T-CTGAAGGTAGAAAAGGTGGACCAGTTGGGTATCTTGCTTGGAAATTGATGG 762 Query 734 TTGATGGAGATTATAGGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 793 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 TTGATGGAGACTATAAGAAGGCAGTTGATATGGTTATGGAGTTAAGACTTTCAGGGCTGA 822 Query 794 AACCAGAAGCGTACAGCTATCTTATTGCGATGACAGCTATAGTGAAAGAGCTGAATAGTC 853 | |||||||| || |||||||| |||||||||||||| || ||||||||||||||||||| Sbjct 823 AGCCAGAAGCTTATAGCTATCTAATTGCGATGACAGCAATTGTGAAAGAGCTGAATAGTC 882 Query 854 TTGGAAAGACATTACGCGAGTTGAAACGCTTTGCACGGGCTGGTTTTGTTGCTGAGATTG 913 |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 883 TTGGGAAGACATTACGCGAGTTGAAACGCTTTACACGGGCTGGTTTTGTTGCTGAGATCG 942 Query 914 ATGATCACGATAGGGTACTCATTGAGAAGTATCAATCAGAAACATTATCTCGTGGACTGC 973 ||||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||||||| Sbjct 943 ATGATCATGATAGGGTACTCATTGAGAAGTACCAATCGGAAACATTATCCCGCGGACTGC 1002 Query 974 AGTTAGCAACTTGGGCGGTTGAGGAAGGCCAAGAAAATGATTCCATTATTGGGGTGGTCC 1033 | ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1003 AATTAGCCACTTGGGCGGTTGAGGAAGGTCAAGAAAATGATTCCATAATTGGGGTGGTCC 1062 Query 1034 ATGAGAGGCTACTCGCTATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAGC 1093 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1063 ATGAGAGGCTCCTCGCAATGTATATATGTGCGGGACGTGGACCAGAAGCAGAGAAACAAC 1122 Query 1094 TCTGGAAGATGAAACTTGCAGGGAGAGAACCTGAAGCTGACCTCCACGACATTGTTATGG 1153 ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| Sbjct 1123 TCTGGAAGATGAAACTTGCAGGGAGAGAACCCGAAGCTGACCTCCACAACATCGTTATGG 1182 Query 1154 CGATCTGCGCTTCAC 1168 | ||||||||||||| Sbjct 1183 CCATCTGCGCTTCAC 1197 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62277550575 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5