BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30120.2
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481922 jgi|Araly1|481922|fgenesh2_kg.4__982__AT2G30120.1 852 0.0
Ahg497212 jgi|Araly1|497212|fgenesh2_kg.59__1__AT2G30120.1 824 0.0
> Ahg481922 jgi|Araly1|481922|fgenesh2_kg.4__982__AT2G30120.1
Length=1165
Score = 852 bits (461), Expect = 0.0
Identities = 534/570 (94%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 8 TACTTTCACAAACCGGAGAAGATTATCGGAGATCGCAAACTATGGCCGGACGAGATCGTT 67
||||||| |||||||||||| | ||||||||||| ||||||||||||||||||| ||||
Sbjct 1 TACTTTCGCAAACCGGAGAATACAATCGGAGATCGGAAACTATGGCCGGACGAGACCGTT 60
Query 68 ATATTCCATCATCAGCAGTTTCAACTTCATCATCTTCAAGATTATTAGAATCTCAATTAA 127
|| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATCTTCCATCGTCGGCAGTTTCAACTTCATCATCTTCAAGATTAGTAGAATCTCAATTAA 120
Query 128 TCGAATCCGATCGAAATCGAGCTCGATCTGTAATCCTCGAGGATCGAATCGCAATCCAAC 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 TCGAATCCGATCGAAATCGAGCTCGATCTGTAATCCTCGAGGATCGAATCGCAATTCAAC 180
Query 188 ACCGTGAAATCCAATCTCTTCTCAACGACAATCAACGATTAGCTGTAGCACACATCGGAC 247
|||||||||||||||||||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 181 ACCGTGAAATCCAATCTCTTCTCAACGATAACCAACGATTAGCTGTGGCACACATTGGAC 240
Query 248 TCAAAGACCAGCTCAATGTAGCTAAGCGTGAGCTCGAACGGTTACTTGAAACCGCTGTTA 307
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||
Sbjct 241 TCAAAGACCAGCTCAATTTAGCCAAGCGTGAGCTCGAACGGTTACTTGAAACCGCTGCTA 300
Query 308 AAGTTAAAGCGGAAGGAGAAGCTAAAGTGCGTGAGGTTTATCAGAATGCGTTGAGAATGG 367
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||
Sbjct 301 AAGTTAAAGCGGAAGGAGAAGCTAAGGTGCGAGAGGTTTATCAGAATGCGTTGAGGATGG 360
Query 368 AGGCGGAGGCTCGTGTGATTGATGGACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATG 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCGGAGGCTCGTGTGATTGATGGACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATG 420
Query 428 TACAGAGGTTAGGTAGTGATAGACAGGAGTTAGCTACGGAATTGGCTATGTTTGATGATG 487
|||||||||||| || |||||||||||||||||||||||| ||||||||| |||||| ||
Sbjct 421 TACAGAGGTTAGCTAATGATAGACAGGAGTTAGCTACGGAGTTGGCTATGCTTGATGGTG 480
Query 488 AGATGGCTAAGGCTAAACCGAATTCGGATCGAGCTATTGAGGTTAAATTGGAGATTGAGA 547
|||||| ||| || |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 481 AGATGGTTAAAGCGAAACCGAATTCGGATCGAGCCATTGAGGTTAAGGCGGAGATTGAGA 540
Query 548 TTCTTCGAGGAGA-GATTCGTAAAGGAAGG 576
||||| ||||||| | ||||||||||||||
Sbjct 541 TTCTTAGAGGAGAAG-TTCGTAAAGGAAGG 569
Score = 363 bits (196), Expect = 2e-99
Identities = 246/270 (91%), Gaps = 3/270 (1%)
Strand=Plus/Plus
Query 574 AGGGCTGCTCTTGAGCTGGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAGCGCGGT 633
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 709 AGGGCTGCTCTTGAGCTTGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAACGCGGT 768
Query 634 ATGGAGAAGACTATCGATCATTTGAATCGAGAGATTGTAAAACTTGAGGAAGAATTGGTT 693
|||||||||||||||||||| |||||||| |||||||| |||||| ||| ||||||||||
Sbjct 769 ATGGAGAAGACTATCGATCACTTGAATCGTGAGATTGTGAAACTTCAGGCAGAATTGGTT 828
Query 694 GATCTGGAGACTAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGCAGCTCCAACCCCAAGT 753
|| ||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 829 AATTTGGAGACGAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGTAGCTCCAAACCCAAGC 888
Query 754 CCTGGATTGGCTGCAAGTTATGGAAACAACACCGATGATATATATGGAGGTCAAGGCCGG 813
|||||||||||||||||||||||||||| | || |||| ||||||||||||| ||||
Sbjct 889 CCTGGATTGGCTGCAAGTTATGGAAACA-CG--GAAAATATTTATGGAGGTCAAGCCCGG 945
Query 814 CAATACCCGGAGGCTAATGGTACTCATGAG 843
||||||||||||||||| ||| |||| |||
Sbjct 946 CAATACCCGGAGGCTAACGGTTCTCACGAG 975
> Ahg497212 jgi|Araly1|497212|fgenesh2_kg.59__1__AT2G30120.1
Length=1161
Score = 824 bits (446), Expect = 0.0
Identities = 513/546 (94%), Gaps = 2/546 (0%)
Strand=Plus/Plus
Query 32 ATCGGAGATCGCAAACTATGGCCGGACGAGATCGTTATATTCCATCATCAGCAGTTTCAA 91
||||||||||| ||||||||||||||||||| |||||| ||||||| || ||||||||||
Sbjct 1 ATCGGAGATCGGAAACTATGGCCGGACGAGACCGTTATCTTCCATCGTCGGCAGTTTCAA 60
Query 92 CTTCATCATCTTCAAGATTATTAGAATCTCAATTAATCGAATCCGATCGAAATCGAGCTC 151
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTTCATCATCTTCAAGATTAGTAGAATCTCAATTAATCGAATCCGATCGAAATCGAGCTC 120
Query 152 GATCTGTAATCCTCGAGGATCGAATCGCAATCCAACACCGTGAAATCCAATCTCTTCTCA 211
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GATCTGTAATCCTCGAGGATCGAATCGCAATTCAACACCGTGAAATCCAATCTCTTCTCA 180
Query 212 ACGACAATCAACGATTAGCTGTAGCACACATCGGACTCAAAGACCAGCTCAATGTAGCTA 271
|||| || |||||||||||||| |||||||| ||| ||||||||||||||||| |||| |
Sbjct 181 ACGATAACCAACGATTAGCTGTGGCACACATTGGAGTCAAAGACCAGCTCAATTTAGCCA 240
Query 272 AGCGTGAGCTCGAACGGTTACTTGAAACCGCTGTTAAAGTTAAAGCGGAAGGAGAAGCTA 331
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 AGCGTGAGCTCGAACGGTTACTTGAAACCGCTGCTAAAGTTAAAGCGGAAGGAGAAGCTA 300
Query 332 AAGTGCGTGAGGTTTATCAGAATGCGTTGAGAATGGAGGCGGAGGCTCGTGTGATTGATG 391
| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 AGGTGCGAGAGGTTTATCAGAATGCGTTGAGGATGGAGGCGGAGGCTCGTGTGATTGATG 360
Query 392 GACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATGTACAGAGGTTAGGTAGTGATAGAC 451
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 361 GACTTGGAGCTGAGCTTGGTCAGGTTAGGTCTGATGTACAGAGGTTAGCTAATGATAGAC 420
Query 452 AGGAGTTAGCTACGGAATTGGCTATGTTTGATGATGAGATGGCTAAGGCTAAACCGAATT 511
|||||||||||||||| ||||||||| |||||| |||||||| ||| || ||||||||||
Sbjct 421 AGGAGTTAGCTACGGAGTTGGCTATGCTTGATGGTGAGATGGTTAAAGCGAAACCGAATT 480
Query 512 CGGATCGAGCTATTGAGGTTAAATTGGAGATTGAGATTCTTCGAGGAGA-GATTCGTAAA 570
|||||||||| ||||||||||| |||||||||||||||| ||||||| | ||||||||
Sbjct 481 CGGATCGAGCCATTGAGGTTAAGGCGGAGATTGAGATTCTTAGAGGAGAAG-TTCGTAAA 539
Query 571 GGAAGG 576
||||||
Sbjct 540 GGAAGG 545
Score = 315 bits (170), Expect = 5e-85
Identities = 194/206 (94%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 574 AGGGCTGCTCTTGAGCTGGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAGCGCGGT 633
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 687 AGGGCTGCTCTTGAGCTTGAGAAGAAGACACGAGCTAGTAACCTTCACCATGAACGCGGT 746
Query 634 ATGGAGAAGACTATCGATCATTTGAATCGAGAGATTGTAAAACTTGAGGAAGAATTGGTT 693
|||||||||||||||||||| |||||||| |||||||| |||||| ||| ||||||||||
Sbjct 747 ATGGAGAAGACTATCGATCACTTGAATCGTGAGATTGTGAAACTTCAGGCAGAATTGGTT 806
Query 694 GATCTGGAGACTAAAGCTAGAGAAGCAAATGCAGCTGCTGAGGCAGCTCCAACCCCAAGT 753
|||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 807 AATCTGGAGACCAAAGCTAGAGAAGCAAATGCAGATGCTGAGGCAGCTCCAAACCCAAGC 866
Query 754 CCTGGATTGGCTGCAAGTTATGGAAA 779
||||||||||||||||||||||||||
Sbjct 867 CCTGGATTGGCTGCAAGTTATGGAAA 892
Score = 135 bits (73), Expect = 4e-31
Identities = 81/85 (95%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 878 TAGTAAGTGTCCAACTTGTACAAGTATCCGTTGGTTAGTGAGAATTGTTGTAAACTCATA 937
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1077 TAGTAAGTGTCCAACTTGTAGAAGTATCCGTTGGTTAGTGAGAATTGTTGTAAACTCATA 1136
Query 938 ATTGACTGAATTCAACGCTTATGAT 962
|| || ||||||||| |||||||||
Sbjct 1137 ATGGATTGAATTCAAAGCTTATGAT 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5