BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30130.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481923 jgi|Araly1|481923|fgenesh2_kg.4__983__AT2G30130.1 1079 0.0
> Ahg481923 jgi|Araly1|481923|fgenesh2_kg.4__983__AT2G30130.1
Length=724
Score = 1079 bits (584), Expect = 0.0
Identities = 689/736 (94%), Gaps = 21/736 (3%)
Strand=Plus/Plus
Query 6 TAAGTTTTTCTTTCTTCTTTCTCTGCTCTCAAAGCTCAAGAGAACTCTATCCTTATTAAC 65
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 TAAGTTTTTCTTTCTTCTTTCTCTGCTCTCAAAGTTCAAGAGAACTCTATCCTTATTAAC 60
Query 66 TTACAAGGATAACTAAAACCGGTGTAATCACGATCATAGTAGAAGATGGGCGGTCCCGGA 125
|| ||| ||||||||||||||||| | | ||| ||||||||||||||| |||
Sbjct 61 TTGCAACGATAACTAAAACCGGTG---T-A--ATC------GAAGATGGGCGGTCCGGGA 108
Query 126 TCATCACCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTC 185
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 TCATCGCCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTC 168
Query 186 GCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGT 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 169 GCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTCGGC 228
Query 246 GCCAGCAACGTCAGCAAAATGTTGCAGGAGCTACCAGTTCATCAAAGAGCTGACGCGGTG 305
||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 229 GCCAGCAACGTTAGCAAAATGTTACAGGAGCTACCGGTTCATCAAAGAGCTGACGCGGTG 288
Query 306 AATAGTCTGGTTTTTGAAGCAAACGCAAGAGTAAGAGATCCGGTCTACGGCTGCGTAGGA 365
|||||||||||||| |||||||||||| |||| ||||||||||| ||||| |||||||||
Sbjct 289 AATAGTCTGGTTTTCGAAGCAAACGCACGAGTTAGAGATCCGGTATACGGATGCGTAGGA 348
Query 366 GCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAA 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 GCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAA 408
Query 426 GCCGAGATTCTTTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTA 485
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 GCCGAGATTCTCTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTT 468
Query 486 CTTGAACTAGACCAAGACCACAAAGCTCTCTTACTAaacaacaacaacatcaataactgc 545
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 469 CTTGAACTAGACCAAGACCACAAGGCTCTCTTGCTAAACAACAACAACATCAATAACTGC 528
Query 546 aacaccaacaacaacaataacaac--T------TTGG-TTATGCCATGTCTTCTGGACAG 596
||||||||||||||||| |||||| | |||| |||||||||||||||||| |||
Sbjct 529 AACACCAACAACAACAACAACAACAATAACAACTTGGGTTATGCCATGTCTTCTGGCCAG 588
Query 597 TTCAACTCTAACTTTGCCTCACCAAGCAGCATAATGCAAATGCAGATGCAAATGCAAATG 656
||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 589 TTCAACTCTAACTTTGCATCTCCAAGTAGCATAATGCAAATGCAGATGCAAATGCAAATG 648
Query 657 CAAGACCCTCTTAAGCAAGAATCTCTTTGGACTtaatgtaataataataataataattaa 716
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 649 CAAGACCCTCTTAAGCAAGAGTCTCTTTGGACTTAATGTAATAATAATAATAATAATTAA 708
Query 717 tGTTCGACAAGTTTGC 732
| ||||||||||||||
Sbjct 709 TTTTCGACAAGTTTGC 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5