BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30130.1 Length=732 Score E Sequences producing significant alignments: (Bits) Value Ahg481923 jgi|Araly1|481923|fgenesh2_kg.4__983__AT2G30130.1 1079 0.0 > Ahg481923 jgi|Araly1|481923|fgenesh2_kg.4__983__AT2G30130.1 Length=724 Score = 1079 bits (584), Expect = 0.0 Identities = 689/736 (94%), Gaps = 21/736 (3%) Strand=Plus/Plus Query 6 TAAGTTTTTCTTTCTTCTTTCTCTGCTCTCAAAGCTCAAGAGAACTCTATCCTTATTAAC 65 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1 TAAGTTTTTCTTTCTTCTTTCTCTGCTCTCAAAGTTCAAGAGAACTCTATCCTTATTAAC 60 Query 66 TTACAAGGATAACTAAAACCGGTGTAATCACGATCATAGTAGAAGATGGGCGGTCCCGGA 125 || ||| ||||||||||||||||| | | ||| ||||||||||||||| ||| Sbjct 61 TTGCAACGATAACTAAAACCGGTG---T-A--ATC------GAAGATGGGCGGTCCGGGA 108 Query 126 TCATCACCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTC 185 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 TCATCGCCATGTGCTTCGTGTAAGCTTCTTCGACGACGATGTGCAAAAGATTGCATCTTC 168 Query 186 GCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTTGGT 245 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 169 GCACCTTATTTTCCTCCTGACGATCCTCACAAATTCGCCATTGTTCATAAGGTCTTCGGC 228 Query 246 GCCAGCAACGTCAGCAAAATGTTGCAGGAGCTACCAGTTCATCAAAGAGCTGACGCGGTG 305 ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 229 GCCAGCAACGTTAGCAAAATGTTACAGGAGCTACCGGTTCATCAAAGAGCTGACGCGGTG 288 Query 306 AATAGTCTGGTTTTTGAAGCAAACGCAAGAGTAAGAGATCCGGTCTACGGCTGCGTAGGA 365 |||||||||||||| |||||||||||| |||| ||||||||||| ||||| ||||||||| Sbjct 289 AATAGTCTGGTTTTCGAAGCAAACGCACGAGTTAGAGATCCGGTATACGGATGCGTAGGA 348 Query 366 GCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAA 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 349 GCAATCTCCTACTTACAAAACCAAGTCTCGCAGCTTCAGATGCAACTAGCAGTGGCTCAA 408 Query 426 GCCGAGATTCTTTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTA 485 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 409 GCCGAGATTCTCTGCATTCAGATGCAAAATGAGCCAACCTTACAGTCTCATCATCAAGTT 468 Query 486 CTTGAACTAGACCAAGACCACAAAGCTCTCTTACTAaacaacaacaacatcaataactgc 545 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 469 CTTGAACTAGACCAAGACCACAAGGCTCTCTTGCTAAACAACAACAACATCAATAACTGC 528 Query 546 aacaccaacaacaacaataacaac--T------TTGG-TTATGCCATGTCTTCTGGACAG 596 ||||||||||||||||| |||||| | |||| |||||||||||||||||| ||| Sbjct 529 AACACCAACAACAACAACAACAACAATAACAACTTGGGTTATGCCATGTCTTCTGGCCAG 588 Query 597 TTCAACTCTAACTTTGCCTCACCAAGCAGCATAATGCAAATGCAGATGCAAATGCAAATG 656 ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| Sbjct 589 TTCAACTCTAACTTTGCATCTCCAAGTAGCATAATGCAAATGCAGATGCAAATGCAAATG 648 Query 657 CAAGACCCTCTTAAGCAAGAATCTCTTTGGACTtaatgtaataataataataataattaa 716 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 649 CAAGACCCTCTTAAGCAAGAGTCTCTTTGGACTTAATGTAATAATAATAATAATAATTAA 708 Query 717 tGTTCGACAAGTTTGC 732 | |||||||||||||| Sbjct 709 TTTTCGACAAGTTTGC 724 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26952902319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5