BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30140.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481925 jgi|Araly1|481925|fgenesh2_kg.4__985__AT2G30140.2 2023 0.0
Ahg481926 jgi|Araly1|481926|fgenesh2_kg.4__986__AT2G30150.1 1062 0.0
Ahg933511 jgi|Araly1|933511|scaffold_401499.1 272 5e-72
> Ahg481925 jgi|Araly1|481925|fgenesh2_kg.4__985__AT2G30140.2
Length=1496
Score = 2023 bits (1095), Expect = 0.0
Identities = 1378/1513 (91%), Gaps = 26/1513 (2%)
Strand=Plus/Plus
Query 4 ACTCTCTTCTTCACCTCCTCAAGTCACAGTGACCAAAATCACACACTTCACAAGAAACAA 63
||||||||||||||||| |||||||||||||||| | | | | |||| || |
Sbjct 1 ACTCTCTTCTTCACCTCTTCAAGTCACAGTGACC---A--A-A-A--TCAC-----AC-A 45
Query 64 CCTATGGATCCAAATGAATCTCCACCAAACCAATTTCGCCACGTGGTGGCCATGCCTTAT 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 -CTATGGATCCAAATGAATCTCCACCAAACCAATTTCGCCACGTGGTGGCCATGCCTTAT 104
Query 124 CCAGGTCGAGGACACATCAACCCTATGATGAACCTCTGCAAACGCCTTGTCCGTCGATAC 183
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 105 CCAGGTCGAGGCCACATCAACCCAATGATGAACCTCTGCAAACGCCTTGTCCGTCGATAC 164
Query 184 CCTAACCTTCACGTCACCTTCGTCGTCACAGAAGAATGGCTCGGGTTTATTGGACCCGAC 243
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 165 CCTAACCTTCACGTCACCTTCGTAGTCACAGAAGAATGGCTCGGGTTTATTGGATCCAAC 224
Query 244 CCGAAACCCGACCGGATCCATTTCTCCACTCTCCCTAATCTCATCCCTTCCGAGCTTGTC 303
|||||||| ||||||||||||||| | |||||||||||||||||||| |||||||| |||
Sbjct 225 CCGAAACCTGACCGGATCCATTTCGCAACTCTCCCTAATCTCATCCCCTCCGAGCTCGTC 284
Query 304 AGGGCCAAAGACTTCATAGGCTTCATTGATGCCGTCTACACAAGATTGGAAGAACCATTC 363
||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||
Sbjct 285 CGGGCCAAGGACTTCATAGGCTTCATTGATGCGGTCTACACAAGATTGGAAGAGCCCTTC 344
Query 364 GAGAAGCTTCTTGACAGCCTCAA-TTCACCACCTCCGAGTGTAAT-ATTCGCCGACACTT 421
||||||||||||||| |||| || ||| || |||||||||| || | ||||||||||||
Sbjct 345 GAGAAGCTTCTTGACGGCCT-AACTTCGCCGCCTCCGAGTGCGATCA-TCGCCGACACTT 402
Query 422 ACGTCATTTGGGCTGTGCGAGTCGGCAGAAAAAGGAATATTCCGGTGGTTTCTCTCTGGA 481
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 403 ACGTCATTTGGGCAGTGCGAGTCGGCAGAAGAAGGAATATTCCGGTGGTTTCTCTCTGGA 462
Query 482 CCATGTCAGCCACGATTCTCTCCTTCTTCCTCCACTCTGATCTACTCATAAGTCATGGCC 541
||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 463 CCATGTCAGCCACAATTCTCTCTTTCTTCCTTCACTCTGATCTACTCATAAGTCATGGCC 522
Query 542 ATGCTCTGTTCGAACCATCAGAAGAAGAGGTTGTTGATTACGTCCCCGGTTTATCTCCGA 601
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 523 ATGCTCTGTTCGAACCATCAGAAGAAGAGGTTGTTGATTACGTCCCCGGTTTACCTCCGA 582
Query 602 CGAAACTCCGAGATTTGCCGCCGATATTTGACGGTTACAGCGACCGAGTCTTCAAGACAG 661
| ||||||||||||||||| || ||||| || ||||||||| ||||||| ||||||||||
Sbjct 583 CCAAACTCCGAGATTTGCCTCCTATATTCGATGGTTACAGCCACCGAGTTTTCAAGACAG 642
Query 662 CTAAGTTGTGTTTCGATGAACTACCAGGAGCTAGGTCTTTACTCTTCACCACCGCCTATG 721
| ||||||||||||||||| || || ||||||| || | |||| |||||||| || ||||
Sbjct 643 CCAAGTTGTGTTTCGATGAGCTTCCGGGAGCTAAGTGTCTACTTTTCACCACTGCTTATG 702
Query 722 AGCTTGAACACAAAGCTATTGACGCTTTCACCTCCAAGCTCGATATCCCGGTCTACGCTA 781
|||| |||| |||||| |||||||||||| ||||||||| |||||||||||||||||||
Sbjct 703 AGCTCGAACCCAAAGCCGTTGACGCTTTCAGCTCCAAGCTTGATATCCCGGTCTACGCTA 762
Query 782 TTGGTCCTTTAATACCTTTTGAAGAACTTTCTGTTCAAAATGATAACAAGGAACCTAATT 841
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 763 CTGGTCCTTTAATACCATTTGAAGAACTTTCTGTCCAAAATGATAACAAGGAACCTGATT 822
Query 842 ACATCCAGTGGCTTGAGGAACAACCGGAAGGCTCTGTTCTTTACATATCTCAGGGAAGTT 901
|||||| ||||||||| || ||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 823 ACATCCGGTGGCTTGACGAGCAACCGGAAAGCTCTGTACTTTACATATCTCAGGGGAGTT 882
Query 902 TTCTTTCGGTCTCGGAAGCTCAGATGGAGGAAATAGTGAAAGGACTGAGAGAAAGTGGAG 961
|||| ||||| ||||||||||||||||| ||||||||||||||| | |||||||||||||
Sbjct 883 TTCTCTCGGTTTCGGAAGCTCAGATGGAAGAAATAGTGAAAGGAGTAAGAGAAAGTGGAG 942
Query 962 TCCGGTTTCTTTGGGTGGCTCGTGGGGGCGAGTTAAAGCTT-AAGGAGGCTCTT-GAAGG 1019
||||||| ||||||||||||||||| ||||| | ||| || |||||| || || |||||
Sbjct 943 TCCGGTTCCTTTGGGTGGCTCGTGGAGGCGAATCGAAG-TTGAAGGAGACT-TTAGAAGG 1000
Query 1020 TAGCTTAGGTGTAGTGGTGAGCTGGTGTGATCAGCTTCGGGTGCTGTGTCACAAAGCTGT 1079
||||| ||||| || ||||||||||||||||||||||| ||||| || ||| |||||
Sbjct 1001 TAGCTCGGGTGTTGTTGTGAGCTGGTGTGATCAGCTTCGTGTGCTCTGCCACGCGGCTGT 1060
Query 1080 AGGCGGGTTTTGGACTCATTGCGGGTTTAACTCGACATTGGAAGGGATATATTCAGGAGT 1139
||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1061 AGGCGGGTTTTGGACACATTGCGGGTTTAACTCAACATTGGAAGGGATATATTCGGGAGT 1120
Query 1140 ACCAATGCTAGCGTTTCCGTTGTTTTGGGATCAGATTCTGAACGCTAAGATGATTGTTGA 1199
||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1121 ACCGATGCTGGCGTTTCCGTTGTTTTGGGATCAGATTTTGAATGCTAAGATGATTGTTGA 1180
Query 1200 GGACTGGAGAGTCGGAATGAGGATCGAGAGGACGAAAAAGAATGAGTTGTTGATAGGGAG 1259
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1181 GGACTGGAGAGTCGGAATGAGGATCGAGAGGGCGAAAAAGGCGGAGTTGTTGATAGGGAG 1240
Query 1260 AGAGGAGATCAAGGAAGTAGTGAAGAGGTTTATGGATAGAGAGAGTGAAGAAGGGAAAGA 1319
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1241 AGAGGAGATTAAGGAAGTAGTGAAAAGGTTTATGGATAGAGAGAGTGAAGAAGGGAAAGA 1300
Query 1320 GATGAGAAGAAGGGCTTGTGACCTTAGTGAAATCAGTCGAGGAGCTGTTGCGAAAAGCGG 1379
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1301 GATGAGAAGAAGAGCTTGTGACCTCAGTGAAATCAGTCGAGGAGCTGTTGCGAAAAGCGG 1360
Query 1380 TTCGTCTAATGTAAACATCGATGAGTTCGTTCGGCATATTACCAATACAAATTAAGGCTC 1439
|||||||||||| ||||| |||| |||||| ||||| ||||||||||||||||||||||
Sbjct 1361 TTCGTCTAATGTTAACATTGATGCTTTCGTTAGGCATGTTACCAATACAAATTAAGGCTC 1420
Query 1440 AAAGAGGTTTTATTGTTTCAATACAA-TGTAAGGCTCAATGGCATGCTCACTAAATCATA 1498
|| |||||||| |||||||||||||| | | |||||||||| || |||||||||||||
Sbjct 1421 AATGAGGTTTTGTTGTTTCAATACAAAT-TCAGGCTCAATGATATATTCACTAAATCATA 1479
Query 1499 TGTATCTTTTGAA 1511
|||||||||||||
Sbjct 1480 TGTATCTTTTGAA 1492
> Ahg481926 jgi|Araly1|481926|fgenesh2_kg.4__986__AT2G30150.1
Length=1338
Score = 1062 bits (575), Expect = 0.0
Identities = 1086/1326 (82%), Gaps = 62/1326 (5%)
Strand=Plus/Plus
Query 115 ATGCCTTATCCAGGTCGAGGACACATCAACCCTATGATGAACCTCTGCAAACGCCTTGTC 174
||||||| || || |||| ||||||||||| ||| ||||||||||||||||||| |||
Sbjct 1 ATGCCTTGGCCCGGAAGAGGCCACATCAACCCAATGTTGAACCTCTGCAAACGCCTCGTC 60
Query 175 CGTCGATACCCTAACCTTCA-CGTCACCTTCGTCGTCACAGAAGAATGGCTCGGGTTT-A 232
|| ||| | || |||| ||| |||||| ||||||||||| ||||||||| || ||||| |
Sbjct 61 CGGCGAGATCCAAACC-TCATCGTCACATTCGTCGTCACCGAAGAATGGTTC-GGTTTAA 118
Query 233 TTGGACCCGACCCGAAACCCGACCGGATCCATTTCTCCACTCTCCCTAATCTCATCCCTT 292
| || ||||||||||||| |||||||||| ||| | |||||||| || ||||||||||
Sbjct 119 TCGGGTCCGACCCGAAACCTAACCGGATCCACTTCGCAACTCTCCCCAACCTCATCCCTT 178
Query 293 CCGAGCTTGTCAGGGCCAAAGACTTCATAGGCTTCATTGATGCCGT-CTACACAAGATTG 351
||||||||||| ||||||| |||||||| |||||| | || ||||| || ||| |||||
Sbjct 179 CCGAGCTTGTCCGGGCCAACGACTTCATCGGCTTCGTCGACGCCGTCCT-CACCAGATTA 237
Query 352 GAAG-AACCATTCGAGAAGCTTCTTGACAGCCTCAATTCACCACCT-CCGAGTGTAAT-A 408
| || | || |||||| ||||||||||| | || || || || ||| ||| | ||| |
Sbjct 238 G-AGCAGCCGTTCGAGCAGCTTCTTGACCGTCTAAACTCTCCGCCTCCCG-CCGCAATCA 295
Query 409 TTCGCCGACACTTACGTCATTTGGGCTGTGCGAGTCGGCAGAAAAAGGAATATTCCGGTG 468
|||||||||||||| |||||||||| ||||| ||||| | |||||||||||||||||||
Sbjct 296 -TCGCCGACACTTACATCATTTGGGCAGTGCGGGTCGGAACAAAAAGGAATATTCCGGTG 354
Query 469 GTTTCTCTCTGGACCATGTCAGCCACGATTCTCTCCTTCTTCCTCCACT-CTGATCTACT 527
| |||| ||||||| | ||| ||||||||||||||| ||||| | || | | ||||| ||
Sbjct 355 GCTTCTTTCTGGACTACGTCGGCCACGATTCTCTCCCTCTTCATTCA-TACCGATCTTCT 413
Query 528 CATAAGTCATGGCCATGCT-C--T-G----TTC-GAACCATCAGAAGAAGAGGTTGTTGA 578
| |||||| |||||| | | | | ||| |||||| | |||||| | |||||
Sbjct 414 CGCAAGTCACGGCCATTTTCCGATCGAACTTTCAGAACCAAAACTAGAAGAAATCGTTGA 473
Query 579 TTACGTCCCCGGTTTATCTCCGACGAA-ACTCCGAGATTTGCCGCCGATATTTGACGGTT 637
|||| ||||||||||||||||||| || |||||| || || || ||| ||| |||| |
Sbjct 474 TTACATCCCCGGTTTATCTCCGAC-AAGACTCCGTGACTT---GCAGATCTTTCACGGCT 529
Query 638 ACAGCGACCGAGTCTTCAAGACAGCTAAGTTGTGTTTCGATGAACT-ACCAGGAGCTAGG 696
| || ||| ||||||||| | | ||| || ||||| ||| || ||| ||||| |
Sbjct 530 ATAGTTACCAAGTCTTCAATATATTTAAAAAGTCTTTCGGTGAGCTCTCCA-AAGCTAAG 588
Query 697 TCT-TTACTCTTCACC-ACCGCCTATGAGCTTGAA-CACAAAGCTATTGACGCTTTCACC 753
| | || |||||| || | || |||||||||||| || ||||| |||||| ||||||
Sbjct 589 TATCTT-CTCTTC-CCTTCTGCTTATGAGCTTGAACCA-AAAGCCATTGACTTTTTCACT 645
Query 754 TCCAAGCTCGA-TATCCCGGTCTACGCTATTGGTCCTTTAATACCTTTTGAAGAACTTTC 812
|||||| | || | ||||||| ||| | | ||||| |||||||| ||||||||||| ||
Sbjct 646 TCCAAGTTTGACT-TCCCGGTTTACTCCACCGGTCCGTTAATACCCTTTGAAGAACTATC 704
Query 813 TGTTCAAAATGATAACA-AGGAACCTAATTACATCCAGTGGCTTGAGGAACAACCGGAAG 871
||| ||| || | | | |||| | ||||||| |||||||||| || |||||||||
Sbjct 705 CGTTGGAAACGAGGATATA-GAACTTGATTACATTAAGTGGCTTGATGAGCAACCGGAAA 763
Query 872 GCTCTGTTCTTTACATATCTCAGGGAAGTTTTCTTTCGGTCTCGGAAGCTCAGATGGAGG 931
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 764 GCTCTGTTCTTTACATATCTCAGGGGAGTTTTCTTTCGGTCTCTGATGCTCAGATGGAGG 823
Query 932 AAATAGTGAAAGGACTGAGAGAAAGTGGAGTCCGGTTTCTTTGGGTGGCTCGTGGGGGCG 991
| |||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 824 AGATAGTGGTAGGAGTGAGAGAGAGTGGAGTCCGGTTTCTTTGGGTGGCTCGTGGGGGTG 883
Query 992 AGTTAAAGCTTAAGGAGGCTCTTGAAGGTAGCTTAGGTGTAGTGGTGAGCTGGTGTGATC 1051
|||| |||||||||| |||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 884 AGTTGAAGCTTAAGGTGGCTCTTGAAGGTAGCTTGGGTGTTGTTGTGAGCTGGTGTGATC 943
Query 1052 AGCTTCGGGTGCTGTGTCACAAAGCTGTAGGCGGGTTTTGGACTCATTGCGGGTTTAACT 1111
||||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 944 AGCTTCGTGTGTTGTGTCACGTGGCTGTAGGCGGGTTTTGGACGCATTGCGGGTTTAACT 1003
Query 1112 CGACATTGGAAGGGATATATTCAGGAGTACCAATGCT-AGCGTTTCC-GTTGTTTTGGGA 1169
|||| ||||||||||||||||| |||||||| ||||| | | ||||| ||| ||||||||
Sbjct 1004 CGACTTTGGAAGGGATATATTCGGGAGTACCGATGCTTA-CATTTCCTGTT-TTTTGGGA 1061
Query 1170 TCAGATTCTGAACGCTAAGATGATTGTTGAGGACTGGAGAGTCGGAATGAGGATCGAGAG 1229
|||| ||||||| || ||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 1062 TCAGTTTCTGAATGCGAAGATGATTGTTGAGGAGTGGAGGGTCGGAATGAGAATCGAGAG 1121
Query 1230 --GA--CGA-A--AA-A-G-A-AT-GAGTTGTTGATAGGGAGAGAGGAGATCAAGGAAGT 1277
|| ||| | || | | | | ||||||||||||| ||| || |||||||||| | |
Sbjct 1122 CAGAATCGAGAGCAAGAAGCAGACAGAGTTGTTGATAGTGAGTGATGAGATCAAGGGATT 1181
Query 1278 AGTG-AAGAGGTTTATGGATAGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGGGCTT 1336
|| ||||| ||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 1182 GGTATAAGAG-TTTATGGATGGAAAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGGACTT 1240
Query 1337 GTGACCTTAGTGAAATCA-GTCGAGGAGCTGTTGCGAAAAGCGGTTCGTCTAATG-TAAA 1394
|||| || ||||| || | |||||||||| |||||| ||| |||||| ||| ||| |||
Sbjct 1241 GTGATCTCAGTGAGAT-ATGTCGAGGAGCGGTTGCGGAAACCGGTTCCTCTGATGCTAA- 1298
Query 1395 CATCGA 1400
||||||
Sbjct 1299 CATCGA 1304
> Ahg933511 jgi|Araly1|933511|scaffold_401499.1
Length=418
Score = 272 bits (147), Expect = 5e-72
Identities = 252/301 (84%), Gaps = 14/301 (5%)
Strand=Plus/Plus
Query 1107 TAACTCGACATTGGAAGGGATATATTCAGGAGTACCA-ATGC-TAGCGTTT-CCGTTGTT 1163
||||||||| ||||||||||||||||| || ||| || |||| || | ||| || || ||
Sbjct 71 TAACTCGACTTTGGAAGGGATATATTCGGGTGTA-CAGATGCTTA-CATTTCCCCTT-TT 127
Query 1164 TTGGGATCAGATTCTGAACGCTAAGATGATTGTTGAGGA-CTGGAGAGTCGGAATGAGGA 1222
| |||||||| ||||||| || ||||||||||| ||||| | ||||||| ||||||||||
Sbjct 128 TCGGGATCAGTTTCTGAATGCGAAGATGATTGTCGAGGAGC-GGAGAGTTGGAATGAGGA 186
Query 1223 TCGAGAGGACGAAAAAGAAT-GAGTTGTTGATAGGGAGAGAGGAGATCAAGGAAGTAGTG 1281
||||||| | ||| || || ||||||||||||| ||| || ||||| |||||| | ||
Sbjct 187 TCGAGAGCAAGAAGCAG-ATGGAGTTGTTGATAGTGAGTGATGAGATTAAGGAATTGGTA 245
Query 1282 AAGAGGTTTATGGATAGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGGGCTTGTGAC 1341
|| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 246 AAAAGGTTTATGGATGGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGAACTTGTGAT 305
Query 1342 CTTAGTGAAATCA-GTCGAGGAGCTGTTGCGAAAAGCGGTTCGTCTAATG-TAAACATCG 1399
|| |||| || | |||||||||| |||||| ||| |||||| ||| ||| ||| |||||
Sbjct 306 CTCAGTGGGAT-ATGTCGAGGAGCGGTTGCGGAAACCGGTTCTTCTGATGCTAA-CATCG 363
Query 1400 A 1400
|
Sbjct 364 A 364
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5