BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30150.1
Length=1323
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481926 jgi|Araly1|481926|fgenesh2_kg.4__986__AT2G30150.1 1814 0.0
Ahg481925 jgi|Araly1|481925|fgenesh2_kg.4__985__AT2G30140.2 1046 0.0
Ahg933511 jgi|Araly1|933511|scaffold_401499.1 468 5e-131
> Ahg481926 jgi|Araly1|481926|fgenesh2_kg.4__986__AT2G30150.1
Length=1338
Score = 1814 bits (982), Expect = 0.0
Identities = 1229/1345 (91%), Gaps = 29/1345 (2%)
Strand=Plus/Plus
Query 1 ATGCCTTGGCCAGGAAGAGGCCACATCAACCCAATGTTAAACCTCTGCAAAAGCCTCGTC 60
||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1 ATGCCTTGGCCCGGAAGAGGCCACATCAACCCAATGTTGAACCTCTGCAAACGCCTCGTC 60
Query 61 CGGCGAGACCCAAACCTCACCGTCACATTCGTCGTCACCGAAGAATGGCTCGGGTTCATC 120
|||||||| |||||||||| |||||||||||||||||||||||||||| |||| || |||
Sbjct 61 CGGCGAGATCCAAACCTCATCGTCACATTCGTCGTCACCGAAGAATGGTTCGGTTTAATC 120
Query 121 GGGTCCGACCCGAAACCTAACCGGATCCATTTCGCCACTCTCCCCAACATCATTCCC-TC 179
||||||||||||||||||||||||||||| ||||| |||||||||||| ||| |||| ||
Sbjct 121 GGGTCCGACCCGAAACCTAACCGGATCCACTTCGCAACTCTCCCCAACCTCA-TCCCTTC 179
Query 180 CGAGCTCGTCCGAGCCAACGACTTCATCGCCTTCATCGACGCCGTCCTCACCAGATTAGA 239
|||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 180 CGAGCTTGTCCGGGCCAACGACTTCATCGGCTTCGTCGACGCCGTCCTCACCAGATTAG- 238
Query 240 AG-AGCCGTTCGAACAGCTACTTGACCGTCTAAACTCT---CCTCCCACCGCAATCATCG 295
|| |||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 239 AGCAGCCGTTCGAGCAGCTTCTTGACCGTCTAAACTCTCCGCCTCCCGCCGCAATCATCG 298
Query 296 CCGATACTTACATCATTTGGGCAGTACGTGTAGGCACAAAAAGGAATATTCCGGTGGCTT 355
|||| |||||||||||||||||||| || || || |||||||||||||||||||||||||
Sbjct 299 CCGACACTTACATCATTTGGGCAGTGCGGGTCGGAACAAAAAGGAATATTCCGGTGGCTT 358
Query 356 CTTTCTGGACTACGTCAGCCACGATTCTCTCCCTCTTCATTAACT-CCGATCTTCTCGCA 414
|||||||||||||||| |||||||||||||||||||||||| | | ||||||||||||||
Sbjct 359 CTTTCTGGACTACGTCGGCCACGATTCTCTCCCTCTTCATTCA-TACCGATCTTCTCGCA 417
Query 415 AGTCACGGCCATTTTCCGATCGAACCATCAGAATCAAAACTAGACGAGATTGTTGATTAC 474
||||||||||||||||||||||||| |||||| |||||||||| || || |||||||||
Sbjct 418 AGTCACGGCCATTTTCCGATCGAACTTTCAGAACCAAAACTAGAAGAAATCGTTGATTAC 477
Query 475 ATCCCCGGTTTATCTCCGACAAGACTCAGTGACTTACAGATCTTACACGGCTATAGTCAT 534
||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
Sbjct 478 ATCCCCGGTTTATCTCCGACAAGACTCCGTGACTTGCAGATCTTTCACGGCTATAGTTAC 537
Query 535 CAAGTCTTCAATATATTCAAAAAGTCTTTCGGTGAGCTTTATAAAGCTAAGTATCTTCTC 594
||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct 538 CAAGTCTTCAATATATTTAAAAAGTCTTTCGGTGAGCTCTCCAAAGCTAAGTATCTTCTC 597
Query 595 TTCCCTTCTGCTTATGAGCTCGAACCAAAAGCCATTGACTTTTTCACTTCCAAGTTTGAT 654
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTCCCTTCTGCTTATGAGCTTGAACCAAAAGCCATTGACTTTTTCACTTCCAAGTTTGAC 657
Query 655 TTCCCGGTTTACTCCACTGGTCCGTTAATACCCTTGGAAGAACTATCCGTTGGAAATGAG 714
||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 658 TTCCCGGTTTACTCCACCGGTCCGTTAATACCCTTTGAAGAACTATCCGTTGGAAACGAG 717
Query 715 AATAGAGAACTTGATTACTTTAAGTGGCTTGATGAGCAACCTGAAAGCTCTGTTCTTTAC 774
||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 718 GATATAGAACTTGATTACATTAAGTGGCTTGATGAGCAACCGGAAAGCTCTGTTCTTTAC 777
Query 775 ATATCTCAAGGGAGTTTTCTTTCAGTCTCCGAAGCTCAGATGGAGGAGATTGTTGTAGGA 834
|||||||| |||||||||||||| ||||| || ||||||||||||||||| || ||||||
Sbjct 778 ATATCTCAGGGGAGTTTTCTTTCGGTCTCTGATGCTCAGATGGAGGAGATAGTGGTAGGA 837
Query 835 GTTAGAGAG-GCTGGAGTTAAGTT-CTTTTGGGTGGCTCGTGGGGGTGAGTTAAAGCTTA 892
|| |||||| | |||||| ||| |||| |||||||||||||||||||||| |||||||
Sbjct 838 GTGAGAGAGAG-TGGAGTCCGGTTTCTTT-GGGTGGCTCGTGGGGGTGAGTTGAAGCTTA 895
Query 893 AGGAGGCTCTTGAAGGTAGCTTGGGTGTTGTGGTGAGCTGGTGTGATCAGCTACGTGTTT 952
||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 896 AGGTGGCTCTTGAAGGTAGCTTGGGTGTTGTTGTGAGCTGGTGTGATCAGCTTCGTGTGT 955
Query 953 TGTGTCATGCGGCTATAGGCGGGTTTTGGACGCATTGCGGGTATAACTCGACATTGGAAG 1012
||||||| | |||| ||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 956 TGTGTCACGTGGCTGTAGGCGGGTTTTGGACGCATTGCGGGTTTAACTCGACTTTGGAAG 1015
Query 1013 GGATATGTTCGGGAGTACCGTTGCTTACATTTCCTGTTTTTTGGGATCAGTTTCTGAATG 1072
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GGATATATTCGGGAGTACCGATGCTTACATTTCCTGTTTTTTGGGATCAGTTTCTGAATG 1075
Query 1073 CTAAGATGATTGTTGAGGAGTGGAGAGT-----TG-GAAT-G-G-G--GA-TCGAGAGGA 1120
| ||||||||||||||||||||||| || || |||| | | | || ||||||| |
Sbjct 1076 CGAAGATGATTGTTGAGGAGTGGAGGGTCGGAATGAGAATCGAGAGCAGAATCGAGAGCA 1135
Query 1121 AGAAGCAGATGGAGTTGTTGATAGTGAGTGATGAGATCAAGGAATTGGTAAAA-AGGTTT 1179
||||||||| ||||||||||||||||||||||||||||||| ||||||| || || |||
Sbjct 1136 AGAAGCAGACAGAGTTGTTGATAGTGAGTGATGAGATCAAGGGATTGGTATAAGAG-TTT 1194
Query 1180 ATGGATGGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGGACTTGTGATCTCAGTGAG 1239
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATGGATGGAAAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGGACTTGTGATCTCAGTGAG 1254
Query 1240 ATATGTCGTGGAGCGGTTGCG-AAAGGTGGTTCTTCTGATGCTAACATCGATGCTTTCAT 1298
|||||||| |||||||||||| ||| ||||| ||||||||||||||||| |||||| |
Sbjct 1255 ATATGTCGAGGAGCGGTTGCGGAAACC-GGTTCCTCTGATGCTAACATCGACGCTTTCCT 1313
Query 1299 TAAAGATATTACTAAGATCGTGTGA 1323
|||||||||||| |||||||| |||
Sbjct 1314 TAAAGATATTACCAAGATCGTCTGA 1338
> Ahg481925 jgi|Araly1|481925|fgenesh2_kg.4__985__AT2G30140.2
Length=1496
Score = 1046 bits (566), Expect = 0.0
Identities = 1080/1324 (82%), Gaps = 51/1324 (4%)
Strand=Plus/Plus
Query 1 ATGCCTTGGCCAGGAAGAGGCCACATCAACCCAATGTTAAACCTCTGCAAAAGCCTCGTC 60
||||||| ||||| |||||||||||||||||||| | |||||||||||| |||| |||
Sbjct 96 ATGCCTTATCCAGGTCGAGGCCACATCAACCCAATGATGAACCTCTGCAAACGCCTTGTC 155
Query 61 CGGCGAGACCCAAACC-TCACCGTCACATTCGTCGTCACCGAAGAATGGCTCGGGTTCAT 119
|| ||| |||| |||| ||| |||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 156 CGTCGATACCCTAACCTTCA-CGTCACCTTCGTAGTCACAGAAGAATGGCTCGGGTTTAT 214
Query 120 CGGGTCCGACCCGAAACCTAACCGGATCCATTTCGCCACTCTCCCCAA-CATCATTCCCT 178
|| ||| ||||||||||| |||||||||||||||| |||||||| || | |||| ||||
Sbjct 215 TGGATCCAACCCGAAACCTGACCGGATCCATTTCGCAACTCTCCCTAATC-TCATCCCCT 273
Query 179 CCGAGCTCGTCCGAGCCAACGACTTCATCGCCTTCATCGACGCCGTCCT-CACCAGATTA 237
||||||||||||| ||||| |||||||| | |||||| || || || || ||| |||||
Sbjct 274 CCGAGCTCGTCCGGGCCAAGGACTTCATAGGCTTCATTGATGCGGT-CTACACAAGATTG 332
Query 238 GAAGAGCCGTTCGA-ACAGCTACTTGACCGTCTAAAC-T---CTCCTCCCACCGCAATCA 292
|||||||| ||||| | |||| |||||| | || ||| | | ||||| | || ||||
Sbjct 333 GAAGAGCCCTTCGAGA-AGCTTCTTGACGGCCT-AACTTCGCCGCCTCCGAGTGCGATCA 390
Query 293 TCGCCGATACTTACATCATTTGGGCAGTACGTGTAGGCACAAAAAGGAATATTCCGGTGG 352
||||||| |||||| ||||||||||||| || || |||| || |||||||||||||||||
Sbjct 391 TCGCCGACACTTACGTCATTTGGGCAGTGCGAGTCGGCAGAAGAAGGAATATTCCGGTGG 450
Query 353 CTTCTTTCTGGACTACGTCAGCCACGATTCTCTCCCTCTTCATTAACTCCGATCTTCTCG 412
|||| ||||||| | ||||||||| |||||||| ||||| || |||| ||||| |||
Sbjct 451 TTTCTCTCTGGACCATGTCAGCCACAATTCTCTCTTTCTTCCTTCACTCTGATCTACTCA 510
Query 413 CAAGTCACGGCCATTTTCCGATCGAACCATCAGAATCAAAACTAGACGAGATTGTTGATT 472
|||||| |||||| || | |||||||||||| || | ||| | | |||||||||
Sbjct 511 TAAGTCATGGCCATGCTCTGTTCGAACCATCAG----AAGA--AGA-G-G-TTGTTGATT 561
Query 473 ACATCCCCGGTTTATCTCCGA-CAAGACTCAGTGACTT---ACAGATCTTAC-ACGGCTA 527
|| ||||||||||| |||||| ||| |||| | || || | || || | | || ||
Sbjct 562 ACGTCCCCGGTTTACCTCCGACCAA-ACTCCGAGATTTGCCTCCTATATT-CGATGGTTA 619
Query 528 TAGTCATCAAGTCTTCAATATATTCAAAAAGTCTTTCGGTGAGCTTTATAAAGCTAAGTA 587
|| || | ||| ||||| | | ||| || ||||| ||||||| ||||||||
Sbjct 620 CAGCCACCGAGTTTTCAAGACAGCCAAGTTGTGTTTCGATGAGCTTCCGGGAGCTAAGTG 679
Query 588 TCTTCTCTTC-CCTTCTGCTTATGAGCTCGAACCAAAAGCCATTGACTTTTTCA-CTTCC 645
||| || ||| || ||||||||||||||||||| |||||| ||||| ||||| | |||
Sbjct 680 TCTACTTTTCACC-ACTGCTTATGAGCTCGAACCCAAAGCCGTTGACGCTTTCAGC-TCC 737
Query 646 AAGTTTGATTTCCCGGTTTACTCCACTGGTCCGTTAATACCCTTGGAAGAACTATCCGTT 705
||| ||||| ||||||| ||| | |||||||| |||||||| || |||||||| || ||
Sbjct 738 AAGCTTGATATCCCGGTCTACGCTACTGGTCCTTTAATACCATTTGAAGAACTTTCTGTC 797
Query 706 GGAAATGAGAA-TAGAGAACTTGATTACTTTAAGTGGCTTGATGAGCAACCTGAAAGCTC 764
|||||| || || |||| ||||||| | ||||||||| |||||||| ||||||||
Sbjct 798 CAAAATGATAACAAG-GAACCTGATTACATCCGGTGGCTTGACGAGCAACCGGAAAGCTC 856
Query 765 TGTTCTTTACATATCTCAAGGGAGTTTTCTTTCAGTCTCCGAAGCTCAGATGGAGGAGAT 824
||| |||||||||||||| ||||||||||| || || || |||||||||||||| || ||
Sbjct 857 TGTACTTTACATATCTCAGGGGAGTTTTCTCTCGGTTTCGGAAGCTCAGATGGAAGAAAT 916
Query 825 TGTTG-TAGGAGTTAGAG-AGGCTGGAGTTAAGTTCTTTTGGGTGGCTCGTGGGGGTGAG 882
| || |||||| |||| | | |||||| |||| |||||||||||||||| || ||
Sbjct 917 AG-TGAAAGGAGTAAGAGAAAG-TGGAGTCCGGTTCCTTTGGGTGGCTCGTGGAGGCGAA 974
Query 883 TTAAAGCTT-AAGGAGGCTCTT-GAAGGTAGCTTGGGTGTTGTGGTGAGCTGGTGTGATC 940
| ||| || |||||| || || |||||||||| ||||||||| ||||||||||||||||
Sbjct 975 TCGAAG-TTGAAGGAGACT-TTAGAAGGTAGCTCGGGTGTTGTTGTGAGCTGGTGTGATC 1032
Query 941 AGCTACGTGTTTTGTGTCATGCGGCTATAGGCGGGTTTTGGACGCATTGCGGGTATAACT 1000
|||| ||||| | || || |||||| |||||||||||||||| |||||||||| |||||
Sbjct 1033 AGCTTCGTGTGCTCTGCCACGCGGCTGTAGGCGGGTTTTGGACACATTGCGGGTTTAACT 1092
Query 1001 CGACATTGGAAGGGATATGTTCGGGAGTACCGTTGCTTACATTTCCTGTT-TTTTGGGAT 1059
| |||||||||||||||| ||||||||||||| |||| | ||||| ||| |||||||||
Sbjct 1093 CAACATTGGAAGGGATATATTCGGGAGTACCGATGCTGGCGTTTCC-GTTGTTTTGGGAT 1151
Query 1060 CAG-TTTCTGAATGCTAAGATGATTGTTGAGGAGTGGAGAGTTGGAATGGGGATCGAGAG 1118
||| ||| ||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1152 CAGATTT-TGAATGCTAAGATGATTGTTGAGGACTGGAGAGTCGGAATGAGGATCGAGAG 1210
Query 1119 GAAGAAGCAGATGGAGTTGTTGATAGTGAGTGATGAGATCAAGGAATTGGTAAAAAGGTT 1178
| ||| || |||||||||||||| ||| || ||||| |||||| | || ||||||||
Sbjct 1211 GGCGAAAAAGGCGGAGTTGTTGATAGGGAGAGAGGAGATTAAGGAAGTAGTGAAAAGGTT 1270
Query 1179 TATGGATGGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAG-GACTTGTGATCTCAGTG 1237
||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||
Sbjct 1271 TATGGATAGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGAG-CTTGTGACCTCAGTG 1329
Query 1238 AGAT-ATGTCGTGGAGCGGTTGCGAAAGGTGGTTCTTCTGATGCTAACATCGATGCTTTC 1296
| || | |||| ||||| ||||||||| | ||||| ||| ||| |||||| |||||||||
Sbjct 1330 AAATCA-GTCGAGGAGCTGTTGCGAAAAGCGGTTCGTCTAATGTTAACATTGATGCTTTC 1388
Query 1297 ATTA 1300
|||
Sbjct 1389 GTTA 1392
> Ahg933511 jgi|Araly1|933511|scaffold_401499.1
Length=418
Score = 468 bits (253), Expect = 5e-131
Identities = 304/329 (92%), Gaps = 2/329 (1%)
Strand=Plus/Plus
Query 996 TAACTCGACATTGGAAGGGATATGTTCGGGAGTACCGTTGCTTACATTTCCTGTTTTTTG 1055
||||||||| ||||||||||||| |||||| |||| | ||||||||||||| ||||| |
Sbjct 71 TAACTCGACTTTGGAAGGGATATATTCGGGTGTACAGATGCTTACATTTCCCCTTTTTCG 130
Query 1056 GGATCAGTTTCTGAATGCTAAGATGATTGTTGAGGAGTGGAGAGTTGGAATGGGGATCGA 1115
|||||||||||||||||| ||||||||||| |||||| |||||||||||||| |||||||
Sbjct 131 GGATCAGTTTCTGAATGCGAAGATGATTGTCGAGGAGCGGAGAGTTGGAATGAGGATCGA 190
Query 1116 GAGGAAGAAGCAGATGGAGTTGTTGATAGTGAGTGATGAGATCAAGGAATTGGTAAAAAG 1175
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 191 GAGCAAGAAGCAGATGGAGTTGTTGATAGTGAGTGATGAGATTAAGGAATTGGTAAAAAG 250
Query 1176 GTTTATGGATGGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGGACTTGTGATCTCAG 1235
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 251 GTTTATGGATGGAGAGAGTGAAGAAGGGAAAGAGATGAGAAGAAGAACTTGTGATCTCAG 310
Query 1236 TGAGATATGTCGTGGAGCGGTTGCG-AAAGGTGGTTCTTCTGATGCTAACATCGATGCTT 1294
|| ||||||||| |||||||||||| ||| ||||||||||||||||||||||| ||||
Sbjct 311 TGGGATATGTCGAGGAGCGGTTGCGGAAACC-GGTTCTTCTGATGCTAACATCGACGCTT 369
Query 1295 TCATTAAAGATATTACTAAGATCGTGTGA 1323
|| ||||||||||||| |||||||| |||
Sbjct 370 TCCTTAAAGATATTACCAAGATCGTCTGA 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49483546266
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5