BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30160.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481927 jgi|Araly1|481927|fgenesh2_kg.4__987__AT2G30160.1 2056 0.0
Ahg470726 jgi|Araly1|470726|fgenesh2_kg.1__680__AT1G07030.1 673 0.0
> Ahg481927 jgi|Araly1|481927|fgenesh2_kg.4__987__AT2G30160.1
Length=1417
Score = 2056 bits (1113), Expect = 0.0
Identities = 1348/1454 (93%), Gaps = 45/1454 (3%)
Strand=Plus/Plus
Query 1 ATGCTTTGTCTTTAGTTTAACCGCCGCATCCTCTCTCTCTGGTCGGAGAAATCTCCAGAT 60
||||| ||||||||||||||||||||| | | |||||||||||||||||||| |||||||
Sbjct 1 ATGCTCTGTCTTTAGTTTAACCGCCGCCT-C-CTCTCTCTGGTCGGAGAAATTTCCAGAT 58
Query 61 TTGGTCATTTCTCCAATCTTCTCGGAACCCTAATTTAACCAAACCTCTCCTCCTTCAGAT 120
||||| ||||||||||||||||||||||||||||| || |||| | || |||||||||||
Sbjct 59 TTGGT-ATTTCTCCAATCTTCTCGGAACCCTAATTCAA-CAAA-C-CT-CTCCTTCAGAT 113
Query 121 TCATCTTCCTCCT-AATCTCCCTAAAAGCTCAAACCTTTCTCTCAATCAATTCTAAACAA 179
|| |||| ||||| ||||||||| ||||||||||||||| |||| ||||| ||||||||
Sbjct 114 TCCTCTT-CTCCTAAATCTCCCT-AAAGCTCAAACCTTT-TCTC--TCAATCCTAAACAA 168
Query 180 TGGCAACAGAAG------CAACAACCAAATTCCCAGAATCCGATCTCCGTCCAATCCCAC 233
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 169 TGGCAACAGAAGCAACAACAACAACCAAATTCCCAGAAGCCGATCTCCGTCCAATCCCAC 228
Query 234 AACCACCGGATTTTCATCCAGCAATCATCGTTCCAGCTCAAAACACAACTCTTAAATTCT 293
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 229 AACCACCGGATTTTCATCCCGCAATCATCGTTCCAGCTCAAAACACCACTCTTAAATTCT 288
Query 294 GGCAACTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGCTATGTTTCCAG 353
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 GGCAGCTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGCTATGTTTCCAG 348
Query 354 TAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATTAAACCAATCGGAA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 349 TAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATTAAACCAATCGGAA 408
Query 414 TCCGTCAAGCTTTCCGTTCAATTATCAAAACCGATGGACCTTCTGCTTTATATAGAGGTA 473
||||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||
Sbjct 409 TCCGTCAAGCTTTCCGTTCAATTATCAAAACTGATGGACCATCAGCTTTGTATAGAGGTA 468
Query 474 TTTGGGCTATGGGACTTGGTGCTGGACCAGCTCACGCTGTTTATTTCTCATTCTATGAAG 533
|||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||
Sbjct 469 TTTGGGCTATGGGACTTGGTGCTGGACCAGCTCATGCTGTTTATTTCTCGTTTTATGAAG 528
Query 534 TCTCTAAGAAGTTTTTATCCGGTGGAAACCCTAATAACTCTGCTGCACACGCTATTTCCG 593
| ||||||||||||||||||||||||||||| |||||||| || |||||||| ||||| |
Sbjct 529 TTTCTAAGAAGTTTTTATCCGGTGGAAACCCGAATAACTCAGCCGCACACGCGATTTCGG 588
Query 594 GTGTTTTCGCTACTATATCTAGTGATGCTGTGTTTACTCCAATGGATATGGTTAAGCAAA 653
||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| |
Sbjct 589 GTGTTTTCGCTACGATATCGAGTGATGCTGTTTTTACTCCAATGGATATGGTTAAGCAGA 648
Query 654 GGTTGCAAATTGGGAATGGAACTTATAAAGGAGTTTGGGATTGTATCAAGAGAGTAACGC 713
||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||| ||
Sbjct 649 GGTTGCAAATTGGGAATGGGACTTATAAAGGAGTTTGGGATTGTATTAAGAGGGTAATGC 708
Query 714 GTGAGGAAGGGTTTGGTGCTTTTTACGCTTCGTATAGAACTACTGTGTTGATGAATGCTC 773
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 709 GTGAGGAAGGGTTCGGTGCTTTTTACGCTTCGTATAGAACTACCGTGTTGATGAATGCTC 768
Query 774 CGTTTACCGCTGTGCATTTCACTACTTATGAGGCGGTTAAGAGAGGTTTGAGGGAGATGT 833
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 769 CGTTTACCGCTGTTCATTTCACTACTTATGAGGCGGTTAAGAGAGGATTGAGGGAGATGT 828
Query 834 TGCCTGAGCATGCTGTTGGAGCA-GAGGATGAGGAAGGTTGGTTGATTTATGCTACTGCT 892
||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 829 TGCCTGAGCATGCTGGTGGAG-ATGAGGATGAGGAAGGTTGGTTGATTTATGCTACTGCT 887
Query 893 GGAGCTGCGGCTGGTGGGTTAGCGGCTGCTGTAACTACTCCGCTTGATGTTGTTAAGACG 952
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 888 GGAGCTGCGGCGGGTGGGTTAGCGGCCGCTGTTACTACTCCGCTTGATGTTGTCAAGACG 947
Query 953 CAGTTGCAATGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGAGCAGTTCAATAAGCGAT 1012
|| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 948 CAATTGCAGTGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGAGCGGTTCAATAAGCGAT 1007
Query 1013 GTGTTCCGTACAATAGTGAAGAAAGACGGTTATAGAGGACTTGCTAGAGGATGGCTACCA 1072
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1008 GTGTTCCGTACAATAGTGAAGAAAGATGGTTATAGAGGACTTGCCAGAGGATGGCTACCA 1067
Query 1073 AGAATGCTCTTCCATGCTCCAGCAGCTGCGATTTGCTGGTCCACTTATGAAACAGTCAAA 1132
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1068 AGAATGCTCTTCCATGCTCCAGCAGCTGCGATCTGCTGGTCAACTTATGAAACAGTCAAA 1127
Query 1133 TCTTTCTTTCAAGATCTCAATGGTGAAGCAAACGCAGCTTGAAAAGACACAAACATACAT 1192
|| ||||||||||||||||| || | |||||||||||||||||||||| ||||
Sbjct 1128 TCCTTCTTTCAAGATCTCAACGG-----C----GCAGCTTGAAAAGACACAAACAAACAT 1178
Query 1193 GCGTTTGGCATAATTTACTTGCCTGATTCAGGTCATTGATTCTTCATAGAGCTAGCTACT 1252
||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1179 GCGTTTGGCTTAATTCGCTTGCCTGATTCAGGTGATTGATTCTTCATAGAGCTAGCTACT 1238
Query 1253 GGTTGGTTAGTATTAACACTAGCTCTTAGAGAAGATCTCTGTTTGTATAATTTATTTGTT 1312
||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1239 GGTTGGTTAGTGTTAACACTAGCTCTTAGAGA-GATCTCTGTTTGTATAATT-ATTTGTT 1296
Query 1313 TTCTTCACGCAATAATGTTATCAGATTAGAGTTACAACAACCCCAAGGCCTTTTTTCTGG 1372
||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1297 TTC---ACGTAATAATGTTTTCAGATTAGAGTTACAACAACCCCAAGGCCTTTTTTCT-- 1351
Query 1373 TTTGCATTGATAGAGAAATTTTGTACTTTTATTTGTTTTAATGAGAAAGATACTATAAAG 1432
| | | |||||||||||||| ||||||||| ||| |||||||| |||||||||||
Sbjct 1352 T----A---ACAGAGAAATTTTGTATTTTTATTTGCTTTCATGAGAAA-ATACTATAAAG 1403
Query 1433 AGATAGATGAGCTT 1446
||||||||||||||
Sbjct 1404 AGATAGATGAGCTT 1417
> Ahg470726 jgi|Araly1|470726|fgenesh2_kg.1__680__AT1G07030.1
Length=1435
Score = 673 bits (364), Expect = 0.0
Identities = 735/913 (81%), Gaps = 29/913 (3%)
Strand=Plus/Plus
Query 283 TCTTAAATTCTGGCAACTAATGGTCGCCGGTTCAATCGCTGGCTCAGTCGAACACATGGC 342
|||||| ||||||||| | ||| | || ||||| || |||||||| ||||||||||||||
Sbjct 359 TCTTAAGTTCTGGCAATTCATGATTGCTGGTTCGATTGCTGGCTCCGTCGAACACATGGC 418
Query 343 TATGTTTCCAGTAGATACAGTCAAAACCCATATGCAAGCTCTTCGTTCATGTCCGATT-A 401
|||||||| || ||||| || || |||||||||||||| ||||| |||||||| || |
Sbjct 419 GATGTTTCCTGTTGATACCGTGAAGACCCATATGCAAGCACTTCGACCATGTCCG-TTAA 477
Query 402 AACCAATCGGAATCCGTCAAGCTTTCCGTTCAATTAT-CAAAACCGATGGACCTTCTGCT 460
|||| |||||||||| |||||||||||||| ||||| ||||| || |||||||| |||
Sbjct 478 AACCCGTCGGAATCCGGCAAGCTTTCCGTTCGATTATCCAAAA-GGAAGGACCTTCAGCT 536
Query 461 TTATATAGAGGTATTTGGGCTATGGGACTTGGTGCTGGACCAGCTCACGCTGTTTATTTC 520
|| ||| |||| |||||||||||||| || || |||||||| |||||||| ||||| |||
Sbjct 537 TTGTATCGAGGGATTTGGGCTATGGGTCTCGGAGCTGGACCTGCTCACGCCGTTTACTTC 596
Query 521 TCATTCTATGAAGTCTCTAAGAAGTTTTTATCCGGTGGAAACCCTAATAACTCTGCT-GC 579
|| || || || || || ||||||| |||||||| || || | || || || | | ||
Sbjct 597 TCCTTTTACGAGGTATCGAAGAAGTATTTATCCGCCGGGAATCAGAACAATTCCG-TCGC 655
Query 580 ACACGCTATTTCCGGTGTTTTCGCTACTATATCTAGTGATGCTGTGTTTACTCCAATGGA 639
|| || | || ||||| |||||||||||||| || |||||||| |||||||| |||||
Sbjct 656 GCATGCGGTCTCAGGTGTATTCGCTACTATATCAAGCGATGCTGTTTTTACTCCCATGGA 715
Query 640 TATGGTTAAGCAAAGGTTGCAAATTGG-GAATGGAACTTATAAAGGAGTTTGGGATTGTA 698
|||||| ||||| |||||||| || || ||| || ||||||||||| ||||||||||||
Sbjct 716 TATGGTGAAGCAGAGGTTGCAGATGGGTGAA-GGGACTTATAAAGGGGTTTGGGATTGTG 774
Query 699 TCAAGAGAGTAACGCGTGAGGAAGGGTTTGGTGCTTTTTACGCTTCGTATAGAACTACTG 758
| ||||| || ||||||||||||| ||||||| ||||| ||||| ||||| || || |
Sbjct 775 TTAAGAGGGTTTTGCGTGAGGAAGGGATTGGTGCGTTTTATGCTTCTTATAGGACGACGG 834
Query 759 TGT-TGATGAATGCTCCGTTTACCGCTGTGCATTTCACTACTTATGAGGCGGTTAAG-AG 816
| | ||||||| || || ||||| ||||| ||||| | || |||||||| | |||| ||
Sbjct 835 T-TCTGATGAACGCGCCTTTTACGGCTGTTCATTTTGCGACGTATGAGGCTGCTAAGAAG 893
Query 817 AGGTTTGAGGGAGATGTT-GCCTGAGCATGCTGTTGGAGCAGAGGATGAGGAAGGTTGGT 875
|| |||| |||| | || ||| | | | | ||| || ||||||||||||||||
Sbjct 894 -GGATTGATGGAG-TTTTCGCC-G-GAAAG-AGTT-----AG-TGATGAGGAAGGTTGGT 942
Query 876 TGATTTATGCTACTGCTGGAGCTGCGGCTGGTGGGTTAGCGGCTGCTGTAACTACTCCGC 935
|| || |||| |||||||||||||| |||||||| || || |||||||| || || ||||
Sbjct 943 TGGTTCATGCCACTGCTGGAGCTGCTGCTGGTGGATTGGCAGCTGCTGTGACGACGCCGC 1002
Query 936 TTGATGTTGTTAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGTTGTGACCGTTTCAAGA 995
|||||||||| |||||||||||||||||||||||||||||||| || ||||| |||| |
Sbjct 1003 TTGATGTTGTCAAGACGCAGTTGCAATGTCAGGGTGTGTGTGGATGCGACCGCTTCACTA 1062
Query 996 GCAGTTCAATAAG-CGATGTGTTCCGTACAATAGTGAAGAAAGACGGTTATAGAGGACTT 1054
| |||| || || | |||| | | || |||||||| ||||| || || |||||||||
Sbjct 1063 GTGGTTCGATTAGTC-ATGTACTGAGAACGATAGTGAAAAAAGATGGATACAGAGGACTT 1121
Query 1055 GCTA-GAGGATGGCTACCAAGAATGCTCTTCCATGCTCCAGCAGCTGCGATTTGCTGGTC 1113
||| | |||||||| || |||||||||||||||||||| ||||| || || || |||||
Sbjct 1122 -CTAAGGGGATGGCTCCCGAGAATGCTCTTCCATGCTCCTGCAGCAGCAATCTGTTGGTC 1180
Query 1114 CACTTATGAAACAGTCAAATCTTTCTTTCAAGATCT-CAATGGTGAAGCAAACGCAGCTT 1172
|||||||||| || ||||||||||||||||| || |||||| || ||| | | || |
Sbjct 1181 CACTTATGAAGGGGTTAAATCTTTCTTTCAAGA-CTTCAATGGCGATTCAAGCACTGCCT 1239
Query 1173 GAAAAGACACAAA 1185
||||| | |||||
Sbjct 1240 GAAAAAAGACAAA 1252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5