BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30170.1
Length=1048
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481929 jgi|Araly1|481929|fgenesh2_kg.4__989__AT2G30170.1 1639 0.0
> Ahg481929 jgi|Araly1|481929|fgenesh2_kg.4__989__AT2G30170.1
Length=1047
Score = 1639 bits (887), Expect = 0.0
Identities = 1002/1055 (95%), Gaps = 18/1055 (2%)
Strand=Plus/Plus
Query 3 AGAGAGCAAGCCATTGCAGGAAATGGCGATTCCAGTGACGAGAATGATGGTTCCTCACGC 62
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAGAGCAAACCATTGCAGGAAATGGCGATTCCAGTGACGAGAATGATGGTTCCTCACGC 60
Query 63 AATACCATCGCTTCGTCTCT--CA--C--A---TCCAAACCCTAGTCGCGTTGACTTCCT 113
|| ||||||||||||||||| || | | |||||| ||||||||||||||||||||
Sbjct 61 AAAACCATCGCTTCGTCTCTCACATCCGAATCTTCCAAATCCTAGTCGCGTTGACTTCCT 120
Query 114 CTGTCGCTGTGCTCCATCAGAAATCCAACCACTTCGGCCTGAACTCTCTTTATCTGTCGG 173
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 CTGTCGCTGTGCTCCATCAGAACTCCAACCACTTCGGCCTGAACTCTCTTTATCTGTCGG 180
Query 174 AATTCACGCAATCCCTCATCCAGATAAGGTAGAGAAAGGTGGTGAAGATGCTTTCTTTGT 233
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 AATTCACGCAATCCCTCATCCAGATAAGGTAGAGAAAGGTGGAGAAGATGCTTTCTTTGT 240
Query 234 AAGTAGTTATAGAGGTGGAGTCATGGCTGTTGCAGATGGTGTCTCCGGTTGGGCTGAACA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGTAGTTATAGAGGTGGAGTCATGGCTGTTGCAGATGGTGTCTCCGGTTGGGCTGAACA 300
Query 294 AGATGTTGATCCTTCCTTGTTCTCTAAAGAACTTATGGCTAACGCTTCTCGTTTAGTTGA 353
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 301 AGATGTTGATCCTTCCTTGTTCTCTAAAGAACTCATGGCTAATGCTTCTCGTTTAGTTGA 360
Query 354 TGACCAAGAGGTCAGATATGATCCTGGTTTTCTCATTGACAAAGCTCATACCGCAACTAC 413
||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 361 TGATGAAGAGGTCAGATATGATCCTGGTTTCCTTATTGACAAAGCTCATACCGCAACTAC 420
Query 414 TTCTAGAGGTTCTGCCACAATTATTCTAGCTATGCTTGAGGAAGTGGGTATTCTCAAAAT 473
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TTCCAGAGGTTCTGCTACAATTATTCTAGCTATGCTTGAGGAAGTGGGTATTCTCAAAAT 480
Query 474 AGGCAATGTTGGTGACTGTGGACTTAAGCTTCTTCGGGAAGGTCAGATTATTTTTGCCAC 533
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 481 AGGCAATGTTGGTGACTGTGGACTTAAGCTTCTTCGTCAAGGTCAGATCATTTTTGCCAC 540
Query 534 TGCTCCACAAGAGCACTATTTTGACTGTCCTTACCAACTAAGCTCTGAGGGGTCTGCTCA 593
| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||
Sbjct 541 TACTCCACAAGAGCACTATTTTGACTGTCCCTACCAATTAAGCTCTGAGGGCTCTGCTCA 600
Query 594 AACTTATCTAGATGCATCGTTTAGCATAGTGGAAGTACAGAAGGGAGACGTGATCGTGAT 653
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AACTTTTCTAGATGCATCGTTTAGCATAGTGGAAGTACAGAAGGGAGACGTGATCGTGAT 660
Query 654 GGGTTCAGACGGACTTTTCGATAATGTGTTTGATCATGAGATCGTTTCTATAGTGACCAA 713
||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 661 GGGTTCAGATGGGCTTTTCGATAATGTGTTTGATCATGAGATCGTTTCGATAGTAACCAA 720
Query 714 GCATACAGATGTTGCAGAGT-CATCAAGGTTATTAGCTGAAGTGGCGAGTAGCCATTCAA 772
|||||||||||||||| | | |||| ||||||||||||||||||||||||||||||||||
Sbjct 721 GCATACAGATGTTGCA-ATTTCATCGAGGTTATTAGCTGAAGTGGCGAGTAGCCATTCAA 779
Query 773 GAGATACAGAGTTTGAGTCTCCATATGCATTAGAAGCAAGAGCCAAGGGGTTTGATGTTC 832
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAGATACAGATTTTGAGTCTCCATATGCATTAGAAGCAAGAGCCAAGGGGTTTGATGTTC 839
Query 833 CTCTCTGGAAGAAGGTACTAGGAAAGAAGCTTACAGGAGGGAAGCTTGATGATGTCACTG 892
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 840 CTCTCTGGAAGAAGGTACTAGGAAAGAAGCTAACAGGAGGGAAGCTTGATGATGTCACTG 899
Query 893 TGATCGTTGCCAAAGTTGTTAGCTCATGAATCACTCTGTTCATGATAAGATCTTCTCTTT 952
||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||||
Sbjct 900 TGATCGTTGCCAAAGTTGTTAGCTCATGACTCACTTTGTTCTTGATATGATCTTCTCTTT 959
Query 953 ATTCTTTTTGTACAAGTCCTTGTAAGAAACTTGTTCTTCACAGAAATTGATAAATGGTAT 1012
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 960 ATTCTTTTTGTACAAGTCCTTGTAAGAAACTTGTTCTTCAAAGAAATTGATAAATGGTA- 1018
Query 1013 TTCAAAGTTCAAACAATAAGAATCGAATCTTTATC 1047
| ||||||||||||||||||||||||||||
Sbjct 1019 ---A---TTCAAACAATAAGAATCGAATCTTTATC 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38999744091
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5