BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30200.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481930 jgi|Araly1|481930|fgenesh2_kg.4__990__AT2G30200.1 2279 0.0
> Ahg481930 jgi|Araly1|481930|fgenesh2_kg.4__990__AT2G30200.1
Length=1417
Score = 2279 bits (1234), Expect = 0.0
Identities = 1357/1418 (96%), Gaps = 2/1418 (0%)
Strand=Plus/Plus
Query 1 TTAACTCCGCTAAAGCTTTTTTAAAAAGGATTACTACTGTTTACTTCTCTGAATGCGTTC 60
||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||
Sbjct 1 TTAACTCCGCTAAAGCTTTTTTAAAAAGGGTTACTTCTG-TTACTTCTCTGAATGCGTTC 59
Query 61 ACTGCTTCACCGTACTATCTTACTCACATCTCCGTCTCATTCTCTTATCCGGCGCACTTC 120
||||||||||| ||||||| ||| ||| |||| |||||||| |||||||| |||| || |
Sbjct 60 ACTGCTTCACCATACTATCCTACGCACTTCTCGGTCTCATTTTCTTATCCTGCGCCCTCC 119
Query 121 TCTCTCCGCCATGGCCACCACCGcctcctcttccttgctcctcccttccatatctctcaa 180
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 120 TCTCTCCGCCATGGCCACCGCCGCCTCCTCTTCCTTGCTCCTCCCTTCCGTATCTCTCAA 179
Query 181 caatctctcctcctctaaaaatgcctccttTGGCTTCGCCGCCAAGAATCTCAGCCGATC 240
|||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 180 CAATCTCTCCAGCTCTAAAAATGCCTCCTTTTGCTTCGCCGCCAAGAATCTCAACCGATC 239
Query 241 TAGGATTTCTATGAGCGTCTCTGCTGGATCTCAGAGTACTACTGTTCACGATTCTCTGTT 300
|||| |||| ||||| ||||| |||||||||||| |||||||||||| |||||| ||||
Sbjct 240 TAGGGTTTCAATGAGTGTCTCCGCTGGATCTCAGTCTACTACTGTTCATGATTCTTTGTT 299
Query 301 CGCTGATTACAAACCCACCTCTGCTTTTCTCTTTCCCGGTCAGGGAGCTCAAGCAGTAGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CGCTGATTACAAACCCACCTCTGCTTTTCTCTTTCCCGGTCAGGGAGCTCAAGCAGTAGG 359
Query 361 AATGGGAAAAGAGTCTCAGAGTGTTGGAGCAGCTGGAGAGTTGTATAAGAAAGCTAATGA 420
|||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 360 AATGGGTAAAGAGGCTCAGAGTGTTGCAGCAGCTGGAGAGTTGTATAAGAAAGCTAATGA 419
Query 421 TATCTTAGGGTATGATCTTTTGGATATTTGTGTTAATGGACCAAAAGAGAAGCTTGATTC 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 420 TATCTTAGGGTATGATCTTTTGGAAATTTGTGTTAATGGACCAAAAGAGAAGCTTGATTC 479
Query 481 TACGGTCATAAGCCAGCCTGCTATTTATGTCACAAGTTTAGCAGCAGTTGAATTGCTCCG 540
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACGGTTATAAGCCAGCCTGCTATTTATGTCACAAGTTTAGCAGCAGTTGAATTGCTCCG 539
Query 541 TGTTCGTGAAGGCGGAGAACAAATAATTAACTCGGTTGATGTGACTTGCGGTCTCAGTTT 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGTTCGTGAAGGCGGAGAACAGATAATTAACTCGGTTGATGTGACTTGCGGTCTCAGTTT 599
Query 601 GGGAGAGTATACTGCTCTGGCTTTTGCTGGAGCCTTCAGCTTCGAGGACGGGCTGAAGCT 660
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGGAGAGTACACTGCTCTGGCATTTGCTGGAGCCTTCAGCTTCGAGGACGGGCTGAAGCT 659
Query 661 TGTAAAACTTAGAGGAGAAGCTATGCAGGCTGCTGCAGATGCTGCTAAGAGTGCCATGGT 720
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TGTAAAACTTAGAGGAGAAGCCATGCAGGCTGCGGCAGATGCTGCTAAGAGTGCCATGGT 719
Query 721 TAGTATCATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAAGA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 720 TAGTATCATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAGGA 779
Query 781 AGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGGGTAATTACGCAGT 840
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 780 AGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTATTTATGTCCGGGTAATTACGCAGT 839
Query 841 ATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCAAAGCTAAGTCATTCAAAGCACG 900
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 840 ATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCAAAGCCAAGTCATTCAAAGCCCG 899
Query 901 AATGACGGTGCGTCTAGCTGTTGCAGGTGCTTTCCACACTAGTTTCATGGAACCAGCAGT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AATGACGGTGCGTCTAGCTGTTGCAGGTGCTTTCCACACTAGTTTCATGGAACCAGCAGT 959
Query 961 CTCGAGATTAGAAGCTGCATTGGCAGCCACAGAGATCAGAAGTCCGAGGATCCCAGTGAT 1020
| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 960 CACGAGATTAGAAGCTGCATTGGCTGCAACAGAGATCAGAAGTCCGAGGATCCCAGTGAT 1019
Query 1021 CTCGAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACG 1080
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ATCCAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACG 1079
Query 1081 CCAGGTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACT 1140
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1080 CCAGGTCACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTAGCCAAAGGACT 1139
Query 1141 TAAAAGCAGCTACGAATTGGGACCTGGAAAGGTAATTGCAGGGATATTCAAGAGAGTAGA 1200
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AAAAAGCAGCTATGAATTGGGACCTGGAAAGGTAATTGCAGGGATATTCAAGAGAGTAGA 1199
Query 1201 TAAAAGCGCAAGTTTCGAAAACATCAGTGCTTGAGAGTATTGCTAGCTTTTTGTTCACAT 1260
||||||||| ||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1200 TAAAAGCGCCAGTGTCGAAAACATCAGTGCTTGAGAGTCTTGCTAGTTTTTTGTTCACAT 1259
Query 1261 GTATTTGAGTTGAGAATCATTGATAATAAGTAAATTTACAACGTATGTCTGTGGA-TCTC 1319
||||||||||||| ||||| | |||||||||||||||| |||||||||||||||| ||||
Sbjct 1260 GTATTTGAGTTGATAATCACTAATAATAAGTAAATTTAAAACGTATGTCTGTGGAATCTC 1319
Query 1320 TCTAGTGCTTCAATAGTTTGGAATTCAAAGTTTTGTATGGAATATTTATGTGACACTTTA 1379
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 TCTAGTGCTTCAGCAGTTTGGAATTCAAAGTTTTGTATGGAATATTTATGTGACACTTTA 1379
Query 1380 CAGGATATATGTATTGAGATATCTTTTTAGTTTCAGTT 1417
|| |||||||||||||||||||||||||||||||||||
Sbjct 1380 CATGATATATGTATTGAGATATCTTTTTAGTTTCAGTT 1417
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5