BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30200.1 Length=1441 Score E Sequences producing significant alignments: (Bits) Value Ahg481930 jgi|Araly1|481930|fgenesh2_kg.4__990__AT2G30200.1 2279 0.0 > Ahg481930 jgi|Araly1|481930|fgenesh2_kg.4__990__AT2G30200.1 Length=1417 Score = 2279 bits (1234), Expect = 0.0 Identities = 1357/1418 (96%), Gaps = 2/1418 (0%) Strand=Plus/Plus Query 1 TTAACTCCGCTAAAGCTTTTTTAAAAAGGATTACTACTGTTTACTTCTCTGAATGCGTTC 60 ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||| Sbjct 1 TTAACTCCGCTAAAGCTTTTTTAAAAAGGGTTACTTCTG-TTACTTCTCTGAATGCGTTC 59 Query 61 ACTGCTTCACCGTACTATCTTACTCACATCTCCGTCTCATTCTCTTATCCGGCGCACTTC 120 ||||||||||| ||||||| ||| ||| |||| |||||||| |||||||| |||| || | Sbjct 60 ACTGCTTCACCATACTATCCTACGCACTTCTCGGTCTCATTTTCTTATCCTGCGCCCTCC 119 Query 121 TCTCTCCGCCATGGCCACCACCGcctcctcttccttgctcctcccttccatatctctcaa 180 ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 120 TCTCTCCGCCATGGCCACCGCCGCCTCCTCTTCCTTGCTCCTCCCTTCCGTATCTCTCAA 179 Query 181 caatctctcctcctctaaaaatgcctccttTGGCTTCGCCGCCAAGAATCTCAGCCGATC 240 |||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 180 CAATCTCTCCAGCTCTAAAAATGCCTCCTTTTGCTTCGCCGCCAAGAATCTCAACCGATC 239 Query 241 TAGGATTTCTATGAGCGTCTCTGCTGGATCTCAGAGTACTACTGTTCACGATTCTCTGTT 300 |||| |||| ||||| ||||| |||||||||||| |||||||||||| |||||| |||| Sbjct 240 TAGGGTTTCAATGAGTGTCTCCGCTGGATCTCAGTCTACTACTGTTCATGATTCTTTGTT 299 Query 301 CGCTGATTACAAACCCACCTCTGCTTTTCTCTTTCCCGGTCAGGGAGCTCAAGCAGTAGG 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 CGCTGATTACAAACCCACCTCTGCTTTTCTCTTTCCCGGTCAGGGAGCTCAAGCAGTAGG 359 Query 361 AATGGGAAAAGAGTCTCAGAGTGTTGGAGCAGCTGGAGAGTTGTATAAGAAAGCTAATGA 420 |||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 360 AATGGGTAAAGAGGCTCAGAGTGTTGCAGCAGCTGGAGAGTTGTATAAGAAAGCTAATGA 419 Query 421 TATCTTAGGGTATGATCTTTTGGATATTTGTGTTAATGGACCAAAAGAGAAGCTTGATTC 480 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 420 TATCTTAGGGTATGATCTTTTGGAAATTTGTGTTAATGGACCAAAAGAGAAGCTTGATTC 479 Query 481 TACGGTCATAAGCCAGCCTGCTATTTATGTCACAAGTTTAGCAGCAGTTGAATTGCTCCG 540 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TACGGTTATAAGCCAGCCTGCTATTTATGTCACAAGTTTAGCAGCAGTTGAATTGCTCCG 539 Query 541 TGTTCGTGAAGGCGGAGAACAAATAATTAACTCGGTTGATGTGACTTGCGGTCTCAGTTT 600 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 540 TGTTCGTGAAGGCGGAGAACAGATAATTAACTCGGTTGATGTGACTTGCGGTCTCAGTTT 599 Query 601 GGGAGAGTATACTGCTCTGGCTTTTGCTGGAGCCTTCAGCTTCGAGGACGGGCTGAAGCT 660 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 600 GGGAGAGTACACTGCTCTGGCATTTGCTGGAGCCTTCAGCTTCGAGGACGGGCTGAAGCT 659 Query 661 TGTAAAACTTAGAGGAGAAGCTATGCAGGCTGCTGCAGATGCTGCTAAGAGTGCCATGGT 720 ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 660 TGTAAAACTTAGAGGAGAAGCCATGCAGGCTGCGGCAGATGCTGCTAAGAGTGCCATGGT 719 Query 721 TAGTATCATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAAGA 780 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 720 TAGTATCATAGGGTTGGACTCAGAAAAGGTTCAGCAGTTGTGTGATGCAGCAAATCAGGA 779 Query 781 AGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTACTTATGTCCGGGTAATTACGCAGT 840 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 780 AGTAGATGAAGCTGACAAAGTTCAGATCGCAAATTATTTATGTCCGGGTAATTACGCAGT 839 Query 841 ATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCAAAGCTAAGTCATTCAAAGCACG 900 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 840 ATCTGGAGGTCTTAAAGGAATCGAAGTTGTTGAAGCCAAAGCCAAGTCATTCAAAGCCCG 899 Query 901 AATGACGGTGCGTCTAGCTGTTGCAGGTGCTTTCCACACTAGTTTCATGGAACCAGCAGT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 AATGACGGTGCGTCTAGCTGTTGCAGGTGCTTTCCACACTAGTTTCATGGAACCAGCAGT 959 Query 961 CTCGAGATTAGAAGCTGCATTGGCAGCCACAGAGATCAGAAGTCCGAGGATCCCAGTGAT 1020 | |||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 960 CACGAGATTAGAAGCTGCATTGGCTGCAACAGAGATCAGAAGTCCGAGGATCCCAGTGAT 1019 Query 1021 CTCGAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACG 1080 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 ATCCAATGTCGATGCACAGCCTCATGCAGATCCAGACACGATCAAGAAGATACTTGCACG 1079 Query 1081 CCAGGTGACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTATCCAAAGGACT 1140 |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1080 CCAGGTCACATCTCCAGTCCAATGGGAGACAACAGTAAAGACTCTCTTAGCCAAAGGACT 1139 Query 1141 TAAAAGCAGCTACGAATTGGGACCTGGAAAGGTAATTGCAGGGATATTCAAGAGAGTAGA 1200 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 AAAAAGCAGCTATGAATTGGGACCTGGAAAGGTAATTGCAGGGATATTCAAGAGAGTAGA 1199 Query 1201 TAAAAGCGCAAGTTTCGAAAACATCAGTGCTTGAGAGTATTGCTAGCTTTTTGTTCACAT 1260 ||||||||| ||| |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 1200 TAAAAGCGCCAGTGTCGAAAACATCAGTGCTTGAGAGTCTTGCTAGTTTTTTGTTCACAT 1259 Query 1261 GTATTTGAGTTGAGAATCATTGATAATAAGTAAATTTACAACGTATGTCTGTGGA-TCTC 1319 ||||||||||||| ||||| | |||||||||||||||| |||||||||||||||| |||| Sbjct 1260 GTATTTGAGTTGATAATCACTAATAATAAGTAAATTTAAAACGTATGTCTGTGGAATCTC 1319 Query 1320 TCTAGTGCTTCAATAGTTTGGAATTCAAAGTTTTGTATGGAATATTTATGTGACACTTTA 1379 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 TCTAGTGCTTCAGCAGTTTGGAATTCAAAGTTTTGTATGGAATATTTATGTGACACTTTA 1379 Query 1380 CAGGATATATGTATTGAGATATCTTTTTAGTTTCAGTT 1417 || ||||||||||||||||||||||||||||||||||| Sbjct 1380 CATGATATATGTATTGAGATATCTTTTTAGTTTCAGTT 1417 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53897696675 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5