BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30210.1
Length=2049
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481932 jgi|Araly1|481932|fgenesh2_kg.4__992__AT2G30210.1 3103 0.0
> Ahg481932 jgi|Araly1|481932|fgenesh2_kg.4__992__AT2G30210.1
Length=2027
Score = 3103 bits (1680), Expect = 0.0
Identities = 1918/2034 (94%), Gaps = 12/2034 (1%)
Strand=Plus/Plus
Query 19 ACAGAGAGCTTCTCACAGTGAAGCAAACAATGGAGTCTTTTCGGCGATTCTCCTTGC-TA 77
||| ||||||||||||||||||||||| |||||||||| |||||||||||||||| | ||
Sbjct 1 ACATAGAGCTTCTCACAGTGAAGCAAAAAATGGAGTCTCTTCGGCGATTCTCCTT-CGTA 59
Query 78 TCCTTCATTGCCCTACTTGCCTACTTCGCTTTCCTCGCTTCTGCTGAACATCACGTCCAT 137
||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 60 TCCTTCATTGCTCTTCTTGCCTACTTCGCTTTCCTCGCTTCCGCTGAACATCATGTCCAA 119
Query 138 CAATTCGTGATCACACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACT 197
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CAATTCGTGATCATACCGACACCAGTGAAGAGGCTGTGCAGAACTCACCAAAGCATCACT 179
Query 198 GTGAATGGTCAGTACCCTGGTCCAACGCTTGTGGTCAGGAACGGTGACTCTCTCGCAATC 257
||||| ||||| | |||||||||||| ||| | |||||||||||||||||||||||||||
Sbjct 180 GTGAACGGTCAATTCCCTGGTCCAACACTTATAGTCAGGAACGGTGACTCTCTCGCAATC 239
Query 258 ACTGTCATCAACAGAGCCCGTTACAACATTAGTATTCATTGGCATGGAATCAGACAGCTG 317
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 ACTGTCATCAACAGAGCCCGTTACAACATTAGTATTCATTGGCATGGAATAAGACAGCTG 299
Query 318 CGGAATCCGTGGGCCGATGGTCCAGAGTATATAACACAATGTCCGATCCGTCCAGGACAA 377
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 300 AGGAATCCGTGGGCTGATGGTCCAGAGTACATAACACAATGTCCAATCCGTCCAGGGCAA 359
Query 378 ACCTACACTTACAGATTCAAAATCGAGGATCAAGAGGGTACGCTTTGGTGGCACGCTCAT 437
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 360 AGCTACACTTACAGATTCAAAATCGAGGACCAAGAGGGTACGCTTTGGTGGCACGCTCAT 419
Query 438 AGCCGCTGGCTCAGAGCCACGGTCTATGGTGCTCTCATCATTTACCCTCGTCTTGGTTCT 497
||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 420 AGCCGTTGGCTCAGAGCCACCGTCTATGGTGCTCTAATCATTTACCCTCGTCTTGGTTCT 479
Query 498 CCTTATCCCTTCTCTATGCCCAAACGTGACATTCCAATTCTTCTTGGGGAATGGTGGGAT 557
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 CCTTATCCCTTCTCTATGCCCAAACGTGACATTCCTATTCTTCTTGGGGAATGGTGGGAT 539
Query 558 AGAAACCCAATGGATGTTTTGAAGCAAGCACAATTTACGGGAGCAGCAGCTAATGTCTCT 617
|||||||||||||| ||||||| |||||||||||| ||||| |||||| ||||||| |||
Sbjct 540 AGAAACCCAATGGACGTTTTGAGGCAAGCACAATTCACGGGTGCAGCACCTAATGTATCT 599
Query 618 GACGCTTACACAATCAACGGTCAACCAGGCGATCTTTACCGCTGCTCGCGGGCTGGGACA 677
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 600 GACGCTTACACAATCAACGGTCAACCAGGGGATCTTTACCGCTGTTCGCGGGCCGGGACA 659
Query 678 ATCCGTTTTCCAATTTTCCCCGGGGAGACGGTGCAACTCCGTGTCATCAACGCTGGTATG 737
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 660 ATCCGTTTTCCAATTTTTCCCGGGGAGACGGTGCAACTCCGTGTCATTAACGCTGCTATG 719
Query 738 AACCAAGAGCTCTTCTTCTCAGTCGCCAACCACCAGTTCACAGTTGTAGAAACTGATTCC 797
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 720 AACCAAGAGCTTTTCTTCTCAGTCGCCAACCACCAGTTCACAGTCGTTGAAACTGATTCC 779
Query 798 GCCTACACGAAACCATTCACCACAAATGTCATCATGATCGGTCCTGGCCAAACCACTAAC 857
||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||
Sbjct 780 GCCTACACGAAACCATTCACCACAAGTGTCATCATGATCGGTCCCGGTCAAACCACTAAC 839
Query 858 GTCCTCCTCACGGCAAACCAGAGACCAGGCCGCTACTACATGGCAGCTCGAGCCTACAAC 917
|||||||||||||||||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 840 CTCCTCCTCACGGCAAACCAGCGACCAGGTCGTTATTACATGGCAGCTCGAGCCTACAAC 899
Query 918 AGCGCAAACGCCCCGTTCGACAACACAACCACTACTGCTATCTTACAATACGTCAACGCT 977
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 900 AGCGCAAACGCTCCTTTCGACAACACAACCACAACCGCTATCTTACAATACGTCAACGCT 959
Query 978 CCAACAAGACGTGGCCGTGGTCGTGGTCAAATCGCTCCTGTTTTCCCAGTCCTCCCCGGG 1037
||||| |||| ||||||||||||||||| |||||||| |||||||| ||||| |||||
Sbjct 960 CCAACTCGACGCGGCCGTGGTCGTGGTCAGATCGCTCCAGTTTTCCCGGTCCTTCCCGGT 1019
Query 1038 TTCAACGACACCGCAACCGCAACTGCTTTCACCAACCGTCTCCGATACTGGAAACGAGCT 1097
||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1020 TTCAATGACACCGCAACAGCAACCGCTTTCACCAACCGTCTGCGATACTGGAAACGAGCT 1079
Query 1098 CCAGTACCACAACAAGTCGACGAGAACCTCTTTTTCACCGTCGGATTAGGGCTAATCAAC 1157
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1080 CCAGTACCACAACAAGTCGACGAGAACCTCTTTTTCACCGTCGGGTTGGGGCTAATCAAC 1139
Query 1158 TG-TGCCAACCCAAACAGTCCC-CGTTGCCAAGGTCCTAACGGGACCCGATTCGCAGCAA 1215
|| | ||||||||||||| ||| |||||||||||||||||||| ||||||||||| || |
Sbjct 1140 TGCT-CCAACCCAAACAG-CCCGCGTTGCCAAGGTCCTAACGGAACCCGATTCGCGGCCA 1197
Query 1216 GCATGAACAACATGTCCTTCGTGCTACCACGAAGTAACTCCGTCATGCAAGCATATTACC 1275
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 1198 GCATGAACAACATGTCCTTCGTGCTACCACGAAGGAACTCCGTCATGCAAGCTTACTACC 1257
Query 1276 AAGGCA-CCCCAGGAATCTTCACAACGGATTTTCCGCCCGTTCCACCGGTGCAATTCGAT 1334
|||| | ||| ||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 1258 AAGGTATGCCC-GGAATCTTCACGACAGATTTTCCACCCGTTCCACCAGTGCAATTCGAT 1316
Query 1335 TACACAGGTAACGTTAGCCGCGGGTTATGGCAGCCCATAAAAGGAACCAAAGCTTACAAG 1394
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TACACCGGTAACGTTAGCCGCGGGTTATGGCAGCCCATAAAAGGAACCAAAGCTTACAAG 1376
Query 1395 CTTAAGTACAAATCTAATGTTCAGATTGTGTTACAAGACACTAGCATTGTCACGCCAGAG 1454
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1377 CTTAAGTACAAAGCTAATGTTCAGATTGTGTTACAAGACACAAGCATTGTCACGCCTGAG 1436
Query 1455 AATCATCCCATGCATCTACACGGGTACCAATTCTACGTGGTCGGGTCAGGTTTCGGTAAT 1514
||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1437 AATCATCCCATGCATTTACACGGGTACCAATTCTACGTGGTCGGGTCAGGTTTTGGCAAT 1496
Query 1515 TTCAACCCGAGAACAGACCCGGCTAGGTTTAACTTATTTGACCCACCAGAGAGGAACACC 1574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTCAACCCGAGAACAGACCCGGCTAGGTTTAACTTATTTGACCCACCAGAGAGGAACACC 1556
Query 1575 ATTGGAACACCTCCAGGTGGTTGGGTGGCAATTCGGTTCGTCGCTGATAATCCAGGAGCA 1634
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1557 ATTGGAACACCTCCAGGTGGTTGGGTGGCAATCCGGTTCGTCGCTGATAATCCAGGAGCA 1616
Query 1635 TGGTTTATGCATTGTCACATTGATTCACATTTGGGATGGGGTTTGGCTATGGTTTTCTTG 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1617 TGGTTTATGCATTGTCACATTGATTCACATTTGGGATGGGGTTTGGCTATGGTTTTCCTA 1676
Query 1695 GTAGAGAACGGTCGTGGACAGTTGCAATCGGTGCAGGCTCCACCATTGGATCTTCCAAGA 1754
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1677 GTCGAGAACGGTCGTGGACAGTTGCAATCGGTGCAGGCTCCACCGTTGGATCTTCCAAGA 1736
Query 1755 TGCTAATAAAAAACTTCTACCGTTGGATCTAAA-GAATTTATGGGgtttggttttttgtt 1813
|||||||||||| |||||||||||||||||||| | || |||||||||| ||||||||||
Sbjct 1737 TGCTAATAAAAATCTTCTACCGTTGGATCTAAACG-ATCTATGGGGTTTCGTTTTTTGTT 1795
Query 1814 cttgttttttAATCaaaaaaaGACTTCGTGAGTCTTGATATGTTAAAGATGGACAACTGC 1873
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1796 CTTGTTTTTTAATC-AAAAAAGACTTTGTGAGTCTTGATATGTTAAAGATGGACAACTGC 1854
Query 1874 TCTATTGAAAGTGGTTCAACCTTTGTTTTCGATGTACTTTTGTTATTTTCCTCGTAATAG 1933
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1855 TCTATTGAAAGTGGTTCAACCTTTGTTTTCGATGTACTTTTGTTATTTTCCTCGTAATAG 1914
Query 1934 AGTGAGTGTTTTCATTTTTCCGATTAAAAATTTACCAAATAAAAGCTGTGTTAGTTAATC 1993
|||||||||| | ||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1915 AGTGAGTGTTGTGATTTTTCCGATTAAAAATT-ACCAAATAAAAGCTGTGTTAGTCAATC 1973
Query 1994 TTCTTTTTCTAGCTGACTTTCCCAAACAACTTTATTAGTTATTAACTTAATATG 2047
|||| |||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 1974 ATCTTCTTCTAGCTGACTTTCCTAAACAATTTTATTAGTTATTAACTTTATATG 2027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77056565635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5