BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30220.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg320775 jgi|Araly1|320775|fgenesh1_pm.C_scaffold_4000832 1626 0.0
Ahg481942 jgi|Araly1|481942|fgenesh2_kg.4__1002__AT2G30310.1 1321 0.0
Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1 641 0.0
> Ahg320775 jgi|Araly1|320775|fgenesh1_pm.C_scaffold_4000832
Length=1062
Score = 1626 bits (880), Expect = 0.0
Identities = 1014/1077 (94%), Gaps = 15/1077 (1%)
Strand=Plus/Plus
Query 1 ATGTATATATCTAAAACCATAGTGTTTGGTCTCTTTGTTGCAACACTCCTCGTGTCTTGC 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTATATCTAAAACCATAGTGTTTGGTCTCTTTGTTGCAACACTCCTCGTGTCTTGC 60
Query 61 AATGCGGATGCAAACACCACGCAGCCGCTTTTCCCGGCGATTCTAATATTCGGCGACTCA 120
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 61 AATGCGGATGCAAACGCCACGCAGCGGCTTTTCCCGGCGATTCTAATCTTCGGCGACTCA 120
Query 121 ACGGCAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAATCACCTC 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACGGTAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAATCACCTC 180
Query 181 CCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAACGGAAGATTCTCAAACGGAAAGCTA 240
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 181 CCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAATGGGAGATTCTCAAACGGAAAGCTA 240
Query 241 ATCTCTGACGTAATCTCCACAAAACTCAACATCAAAGAGTTTGTTCCTCCGTTTCTACAA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATCTCTGACGTAATCTCCACCAAACTCAACATCAAAGAGTTTGTTCCTCCGTTTCTACAG 300
Query 301 CCGAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCGGGTGCTGGC 360
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 CCAAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCCGGTGCTGGC 360
Query 361 TACGATGACGAGACCTCACTATCTAGCAAAGCTATTCCGGTCTCACAACAGCCAAGCATG 420
||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||| |||||
Sbjct 361 TACGATGACGAGACCTCGCTATCGAGCAAGGCTATCCCGGTCTCACAACAGCCACGCATG 420
Query 421 TTCAAGAATTATATTGCTCGTCTCAAAGGTATCGTAGGAGACAAGAAAGCGATGGAGATT 480
||||||||||||||||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 421 TTCAAGAATTATATTGCTCGTCTCAAACGTATCGTAGGAGACAAGAAAGCAATGAACATA 480
Query 481 ATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGAACTTTTAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGAACTTTTAC 540
Query 541 GATATCCCCATAAGGCGTCTCGAGTATCCTACTATCTATGGCTACCAAGATTTTGTTCTC 600
|||||||||| ||||| |||||||||||||||||||||||| |||||||||||||| |||
Sbjct 541 GATATCCCCACAAGGCATCTCGAGTATCCTACTATCTATGGTTACCAAGATTTTGTCCTC 600
Query 601 AAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGGAATATTCTAGTC 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 601 AAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTTGGTTGCCGGAATATTCTAGTC 660
Query 661 GGAGGGTTGCCGCCAATGGGATGTTTACCGATCCAATTGACCGCGAAATTGAGAACCATT 720
|||||||||||||| ||||||||||||||||||||| |||||| |||| |||||| ||||
Sbjct 661 GGAGGGTTGCCGCCGATGGGATGTTTACCGATCCAAATGACCGTGAAAATGAGAAGCATT 720
Query 721 TTGGGAATTTGTGTGGAACAAGAAAACAAAGACTCCATTTTGTACAATCAGAAGCTTGTA 780
| | | ||| | ||||||| |||||||||||| ||||||||||||| || || |||
Sbjct 721 T-G----T--GTG-G-AACAAGAGAACAAAGACTCCGTTTTGTACAATCAAAAACTAGTA 771
Query 781 AAGAAATTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGCTAACGTC 840
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 772 AAGAAACTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACGCTAACATC 831
Query 841 TACGACCCTGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAGGAGACGAAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TACGACCCTGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAGGAGACGAAG 891
Query 901 AAAGGATGTTGCGGAACAGGATACTTGGAAACAAGCTTCTTGTGCACTTCCTTGTCAAAG 960
| ||||||||||||||||| | |||||| ||||||||||||| |||||| ||||||
Sbjct 892 ACAGGATGTTGCGGAACAG--T----GGAAACGAGCTTCTTGTGCAATTCCTTATCAAAG 945
Query 961 ACTTGTCCGAATCATTCGGATCACTTGTTTTGGGACTCCATTCATCCCTCCGAGGCAGCT 1020
||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 946 ACTTGTCCGAATCATTCAGATCATTTGTTTTGGGACTCCATTCACCCCTCCGAAGCAGCT 1005
Query 1021 TACAAATACCTAGGGAACTTCATAGATGCTCAGATTCAAGAGTGGCTTAAGACTTAA 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1006 TACAAATACCTAGGGAACTTCATAGATGCTCAGATTCATGAGTGGCTTAAGGCTTAA 1062
> Ahg481942 jgi|Araly1|481942|fgenesh2_kg.4__1002__AT2G30310.1
Length=1084
Score = 1321 bits (715), Expect = 0.0
Identities = 968/1089 (89%), Gaps = 21/1089 (2%)
Strand=Plus/Plus
Query 1 ATGTATATATCTAAAACCATAGTGTTTGGTCTCTTT-GTTGCAACACTCCTCGTGTCTTG 59
||||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1 ATGTATACATCTAAAACCTTAGTGTTTGGTCT-TTTCGTTGCAACACTCCTCGTGTCTTG 59
Query 60 CAATGCGGATGCAAACACCAC---GCAGCCGCTTTTCCCGGCGATTCTAATATTCGGCGA 116
|||||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||| ||
Sbjct 60 CAATGCGGCTGCAAACGCCACAATGCAGCCGCTTTTCCCAGCGATTCTAATCTTCGGGGA 119
Query 117 CTCAACGGCAGACACAGGCAATAACAACTACTACTCACAAGCCGTCTTCAAGGCTAAT-C 175
|||||| |||||||||||||| || |||||| | | |||| || ||||||||||| || |
Sbjct 120 CTCAACCGCAGACACAGGCAACAATAACTACGATTTACAAACCATCTTCAAGGCT-ATGC 178
Query 176 ACCTCCCTTATGGCGTTGATCTTCCCGGCCACGAAGCTAACGGAAGATTCTCAAACGGAA 235
| || ||||| || |||||||| |||||||| ||||| | |||||||||||| || ||||
Sbjct 179 ATCTTCCTTACGGAGTTGATCTCCCCGGCCATGAAGCGAGCGGAAGATTCTCGAATGGAA 238
Query 236 AGCTAATCTCTGACGT-AAT-CTCCACAAAACTCAACATCAAAGAGTTTGTTCCTCCGTT 293
| ||||||||||| | | | || | | ||||||||||| |||||||| |||||||| ||
Sbjct 239 AACTAATCTCTGATATCATTGCTTC-C-AAACTCAACATTAAAGAGTTGGTTCCTCCATT 296
Query 294 TCTACAACCGAACATCTCCGACCAAGACATTGTCACTGGAGTCTGTTTTGCATCCGCGGG 353
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 TCTACAACCAAACATCTCCGACCAAGACATTGTCACTGGCGTCTGTTTTGCATCCGCGGG 356
Query 354 TGCTGGCTACGATGA-CGAGACCTCACTATCTAGCAAAGCTATTCCGGTCTCACAACAGC 412
||| ||||||||||| || ||||||||| || |||||||| || || |||||||| || |
Sbjct 357 TGCGGGCTACGATGACCG-GACCTCACTCTCGAGCAAAGCAATCCCAGTCTCACAGCAAC 415
Query 413 CAAGCATGTTCAAGAATTATATTGCTCGTCTCAAAGGTATCGTAGGAGACAAGAAAGCGA 472
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 416 CAAGCATGTTCAAGAATTACATTGCTCGTCTGAAAGGTATCGTAGGGGACAAGAAAGCGA 475
Query 473 TGGAGATTATTAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAATGATTTCATCTTGA 532
||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 476 TGGAGATCATCAACAACGCTTTAGTGGTCATAAGCGCAGGGCCTAACGACTTCATCTTGA 535
Query 533 ACTTTTACGATATCCCCATAAGGCGTCTCGAGTATCCTACTATCTATGGCTACCAAGATT 592
||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct 536 ACTTTTATGATATCCCCACGAGGCGTCTCGAGTATCCTACTATCTATGGTTACCAAGAGT 595
Query 593 TTGTTCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGGAATA 652
|| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 596 TTATCCTCAAGAGGCTTGACGGTTTTGTCCGGGAGCTTTATAGTTTAGGTTGCCGAAATA 655
Query 653 TTCTAGTCGGAGGGTTGCCGCCAATGGGATGTTTACCGATCCAATTGACCGCGAAATTGA 712
|| | ||||||||| | || |||||||||||||||||||||||| ||||| | ||| |||
Sbjct 656 TTGTGGTCGGAGGGCTACCTCCAATGGGATGTTTACCGATCCAAATGACCACAAAAATGA 715
Query 713 GAACCATTTTGGGAATTTGTGTGGAACAAGAAAACAAAGACTCCATTTTGTACAATCAGA 772
||| ||| ||| || |||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 716 GAAACATATTGAGATTTTGTGTGGAACAAGAGAACAAAGACTCCGTTTTGTACAATCAGA 775
Query 773 AGCTTGTAAAGAAATTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACG 832
| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AACTAGTAAAGAAACTGCCTGAGATCCAAGCGTCTCTACCCGGAAGCAAGTTCCTTTACG 835
Query 833 CTAACGTCTACGACCC-TGTGATGGACATGATCCGAAACCCTAGCAAATACGGATTCAAG 891
| |||||||||||||| | | ||||||||||||| ||||||||| |||||||||||||||
Sbjct 836 CCAACGTCTACGACCCAT-TAATGGACATGATCCAAAACCCTAGTAAATACGGATTCAAG 894
Query 892 GAGACGAAGAAAGGATGTTGCGGAACAGGATACTTGGAAACAAGC-TTCTTGTGCACTTC 950
||||| ||||||||||||||||||||||||||||||||||| || ||| |||||| | |
Sbjct 895 GAGACAAAGAAAGGATGTTGCGGAACAGGATACTTGGAAACG-GCCTTCATGTGCAATCC 953
Query 951 CTTGT-CAAAGACTTGTCCGAATCATTCGGATCACTTGTTTTGGGACTCCATTCATCCCT 1009
||| | ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 954 CTT-TACAAAGACTTGTCCGAATCACTCGGATCACTTGTTTTGGGACTCAATTCATCCCT 1012
Query 1010 CCGAGGCAGCTTACAAATACCTAGGGAACTTCATAGATGCTCAGATTCAAGAG-TGGCTT 1068
| || || |||||||| ||| | || ||||| | ||||||||||||| || | ||| ||
Sbjct 1013 CAGAAGCTGCTTACAATTACATTGGCAACTTTGTGGATGCTCAGATTCGAG-GCTGGATT 1071
Query 1069 AAGACTTAA 1077
||| |||||
Sbjct 1072 AAGGCTTAA 1080
> Ahg482080 jgi|Araly1|482080|fgenesh2_kg.4__1140__AT2G31540.1
Length=1181
Score = 641 bits (347), Expect = 0.0
Identities = 743/929 (80%), Gaps = 47/929 (5%)
Strand=Plus/Plus
Query 41 CAACACTCCTCGTGTCTTGCAATGCGGAT-GCAAA--C-ACCACGCAGCCGCTTTTCCCG 96
||||||| ||| ||| ||||| || | | ||||| | || || | ||||| |||||
Sbjct 46 CAACACTATTCGCGTCCTGCAACGCAG-TCGCAAACGCAACAACAAAACCGCTCTTCCCA 104
Query 97 GCGATTCTAATATTCGGCGACTCAA-CGGCAGACACAGGCAATAACAACTACTAC-TCA- 153
||||||||||| |||||||| |||| || | ||||||||||| ||||||||| | | |
Sbjct 105 GCGATTCTAATCTTCGGCGATTCAACCGTC-GACACAGGCAACAACAACTAC-CCTTTAC 162
Query 154 CAAGCCGTCTTCAAG-GCT-AATCACCTCCCTTATGGCGTTGATCTTCCCG--GCCACGA 209
||| | ||||| || ||| || ||| | ||||| ||| | |||||||| | | || |
Sbjct 163 CAA-CAATCTTC-AGAGCTGAA-CACTTTCCTTACGGCATGGATCTTCCAGATGGCA--A 217
Query 210 AGCTAACGGAAGATTCTCAAACGGAAAGCTAATCTCTGACGTAATCTCCACAAAACTCAA 269
||||||||||||||||||||||||||| || ||||| ||| ||||| | || ||||||||
Sbjct 218 AGCTAACGGAAGATTCTCAAACGGAAAACTTATCTCCGACATAATCGCAACCAAACTCAA 277
Query 270 CATCAAAGAGTTTGTTCCTCCGTTTC-TACAACCGAA-CATCTCCGACCAAGACATTGTC 327
||||||||||||| ||||||| |||| ||||||| || | ||||||||||||||||| |
Sbjct 278 CATCAAAGAGTTTATTCCTCC-TTTCTTACAACCAAATC-TCTCCGACCAAGACATTCTA 335
Query 328 ACTGGAGTCTGTTTTGCATCCGCGGGTGCTGGCTACGATGA-CGAGACCTCACTATCTAG 386
|| ||||||||||| ||||| || ||||| || ||||| || | | ||| || || |
Sbjct 336 ACCGGAGTCTGTTTCGCATCAGCTGGTGCCGGTTACGACGACCTA-ACCAGTCTCTCCA- 393
Query 387 CA-AAGCTATTCCG-GTCTCACAACAGCCAAGCATGTTCAAGAATTATATTGCTCGTCTC 444
|| |||| ||| || ||||| |||| |||| ||||||||||| ||| ||||||||||||
Sbjct 394 CACAAGCCATT-CGTGTCTCGGAACAACCAAACATGTTCAAGAGTTACATTGCTCGTCTC 452
Query 445 AAAGGTATCGTAGGAGACAAGAAAGCGATGGAGATTATTAACAACGCTTTAGTGGTCATA 504
||||||||||| |||||||||||||| |||||||| || ||||| ||||||||||| ||
Sbjct 453 AAAGGTATCGTGGGAGACAAGAAAGCAATGGAGATCATAAACAATGCTTTAGTGGTTATC 512
Query 505 AGCGCAGGGCCTAATGATTTCATCTTGAACTTTTACGATATCCCCAT-AAGGCGTCTCGA 563
|| ||||||||||| |||||||| ||||||| ||||||||| ||| | ||||||||||||
Sbjct 513 AGTGCAGGGCCTAACGATTTCATTTTGAACTATTACGATATTCCC-TCAAGGCGTCTCGA 571
Query 564 GTATCCTA-CTATCTATGGCTACCAAGATTTTGTTCTCAAGAGGCTTGACGGTTTTGTCC 622
||||||| | || | ||| |||||||| ||| |||| || |||||||| | | || |
Sbjct 572 GTATCCTTTC-ATTTCTGGTTACCAAGACTTTATTCTTAAAAGGCTTGAAAATATCGTGC 630
Query 623 GGGAGCTTTATAGTTTAGGTTGCCGGAATATTCTAGTCGGAGGGTTGCCGCCAATGGGAT 682
|||||||||| ||| |||||| |||||||||| | || ||||| |||||||||||||| |
Sbjct 631 GGGAGCTTTACAGTCTAGGTTCCCGGAATATTTTGGTTGGAGGTTTGCCGCCAATGGGGT 690
Query 683 GTTTACCGATCCA-ATTGACCGCGAAATTGAG-AACCATTTTGGGAATT-TG-TGTGGAA 738
||||||||||||| || ||| | ||||| | ||| |||| | | || || | |||||
Sbjct 691 GTTTACCGATCCACAT-GACTGTTAAATTCCGCAACGTTTTTAG-A-TTCTGCT-TGGAA 746
Query 739 CAAGAAAACAAAGACTCCATTTTGTACAATCAGAAGCTTGTA-AAGAAATTGCCTGAGA- 796
||| | |||| |||||| |||| ||||||||||| ||| | || ||||| | |
Sbjct 747 CAACATAACAGAGACTCTGTTTTATACAATCAGAAACTTC-AGAATCTCTTGCCCCA-AC 804
Query 797 TCCAAGCGTCTCT-ACCCGGAAGCAAGTTCCTTTACGCTAACGTCTACGACCCTGTGATG 855
|| |||| ||||| | |||||||| |||||||||| | ||||| | ||| |||||
Sbjct 805 TCGAAGCATCTCTTAAA-GGAAGCAAAATCCTTTACGCCGATGTCTATAATCCTATGATG 863
Query 856 GACATGATCCGAAACCCTAGCAAATACGGATTCAAGGAGACGAAGAAAGGATGTTGCGGA 915
|| ||||| | |||||||||||||||||| ||||| |||||||||| ||||||||| |||
Sbjct 864 GAGATGATGCAAAACCCTAGCAAATACGGGTTCAAAGAGACGAAGAGAGGATGTTGTGGA 923
Query 916 ACAGGATACTTGGAAACAAGCTTCTTGTG 944
||||| | |||||| || |||||| ||||
Sbjct 924 ACAGGGTTCTTGGAGACGAGCTTCATGTG 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5