BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G30230.1 Length=815 Score E Sequences producing significant alignments: (Bits) Value Ahg481935 jgi|Araly1|481935|fgenesh2_kg.4__995__AT2G30230.1 937 0.0 > Ahg481935 jgi|Araly1|481935|fgenesh2_kg.4__995__AT2G30230.1 Length=714 Score = 937 bits (507), Expect = 0.0 Identities = 548/568 (96%), Gaps = 1/568 (0%) Strand=Plus/Plus Query 53 AAAACATAGAAATCTGTTTGC-AAAGAAGAAGATATGGGAAACAGTTTACGGTGTTGTTT 111 ||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 1 AAAACTTAGAAATCTGTTAGCAAAAGAAGAAGATATGGGAAACAGTTTACGGTGTTGTTT 60 Query 112 GGCTTGTGTACTTCCATGTGGAGCTTTAGATTTGATCCGTATCGTACATCTCAACGGCCA 171 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 61 GGCTTGTGTACTTCCATGTGGAGCGTTAGATTTGATCCGTATCGTACATCTCAACGGCCA 120 Query 172 CGTCGACGAGATCACTAGTCCAATGACCGCCGGCGAGATTCTTCAGGCGAATCCTAACCA 231 |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||| Sbjct 121 CGTCGACGAGATCACTCGTCCAATGACCGCCGGTGAGATCCTTCAGGCGAATCCTAACCA 180 Query 232 TGTCTTAAGCAAACCTTGTTCTCAAGGAGTTGTGCGTAAGATCTTGATCTTGTCTCCTGA 291 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| Sbjct 181 TGTCTTAAGCAAACCTTGTTCTCAAGGAGTTGTTCGTAAGATCTTGATCTTGTCCCCTGA 240 Query 292 ATCTGAGCTTAAGCGTGGAAGCATCTATTTTCTTATCCCGGATACTTCTATGCCGGagaa 351 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 241 ATCTGAGCTTAAGCGTGGAAGCATCTATTTTCTTATACCGGATACTTCTTTGCCGGAGAA 300 Query 352 gaagaaaacaaagaagagaaaagaGCTCCGATGCCGGAAAAAGCCTCTTGAAAGCGGCAA 411 |||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| Sbjct 301 GAAGAAGACAAAGAAGAGAAAAGAGGTCCGTTGCCGGAAAAAGCCTCTTGAAAGCGGCAG 360 Query 412 CGATATTAATAGTGATCATGTGAGTACTAATAAGGATCTTGATGGTCATTGTTTGACGTT 471 || ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 361 GGACATTAATAGTGATCATATGAGTACTAATAAGGATCTTGATGGTCATTGTTTGACATT 420 Query 472 GTGTGAGAAATATTTGGAAGATGTTATGTTGTCGGAGAAGATGAGTTCGGCCGGTAAAGA 531 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTGTGAGAAATATTTGGAAGATGTTATGTTGTCGGAGAAGATGAGTTCGGCCGGTAAAGA 480 Query 532 GAATCGTCACCGTCGGAAACATAGCCGGTCGGCGTCAGTGTCCACGTGGCGGCCTCACCT 591 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 481 GAATCGTCACCGTCGGAAACATAGCCGGTCGGCATCAGTGTCCACGTGGCGGCCTCACCT 540 Query 592 TGATAGCATCACTGAGGATCTTAATTAA 619 |||||||||||||||||||||||||||| Sbjct 541 TGATAGCATCACTGAGGATCTTAATTAA 568 Score = 172 bits (93), Expect = 3e-42 Identities = 108/115 (94%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 703 tttttttttttGGATCCGG-AATCGGATTTTTATTTAACATGCCCGGTGAGAAAA-TTTC 760 ||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| |||| Sbjct 600 TTTTTTTTTTTGGATCCGGAAATCGGATTTTTATTTAACATTCCCGGGGAGAAAATTTTC 659 Query 761 AAATATTTTATTTATTATGAAGTTAAAACCAAAACTATGTACTGTTCTCATGTGG 815 |||||||||||||||||||||||||||| |||||||||||| ||| ||||||||| Sbjct 660 AAATATTTTATTTATTATGAAGTTAAAAACAAAACTATGTAATGTACTCATGTGG 714 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30117104430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5