BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30230.1
Length=815
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481935 jgi|Araly1|481935|fgenesh2_kg.4__995__AT2G30230.1 937 0.0
> Ahg481935 jgi|Araly1|481935|fgenesh2_kg.4__995__AT2G30230.1
Length=714
Score = 937 bits (507), Expect = 0.0
Identities = 548/568 (96%), Gaps = 1/568 (0%)
Strand=Plus/Plus
Query 53 AAAACATAGAAATCTGTTTGC-AAAGAAGAAGATATGGGAAACAGTTTACGGTGTTGTTT 111
||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAACTTAGAAATCTGTTAGCAAAAGAAGAAGATATGGGAAACAGTTTACGGTGTTGTTT 60
Query 112 GGCTTGTGTACTTCCATGTGGAGCTTTAGATTTGATCCGTATCGTACATCTCAACGGCCA 171
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTTGTGTACTTCCATGTGGAGCGTTAGATTTGATCCGTATCGTACATCTCAACGGCCA 120
Query 172 CGTCGACGAGATCACTAGTCCAATGACCGCCGGCGAGATTCTTCAGGCGAATCCTAACCA 231
|||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 121 CGTCGACGAGATCACTCGTCCAATGACCGCCGGTGAGATCCTTCAGGCGAATCCTAACCA 180
Query 232 TGTCTTAAGCAAACCTTGTTCTCAAGGAGTTGTGCGTAAGATCTTGATCTTGTCTCCTGA 291
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 181 TGTCTTAAGCAAACCTTGTTCTCAAGGAGTTGTTCGTAAGATCTTGATCTTGTCCCCTGA 240
Query 292 ATCTGAGCTTAAGCGTGGAAGCATCTATTTTCTTATCCCGGATACTTCTATGCCGGagaa 351
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 241 ATCTGAGCTTAAGCGTGGAAGCATCTATTTTCTTATACCGGATACTTCTTTGCCGGAGAA 300
Query 352 gaagaaaacaaagaagagaaaagaGCTCCGATGCCGGAAAAAGCCTCTTGAAAGCGGCAA 411
|||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 301 GAAGAAGACAAAGAAGAGAAAAGAGGTCCGTTGCCGGAAAAAGCCTCTTGAAAGCGGCAG 360
Query 412 CGATATTAATAGTGATCATGTGAGTACTAATAAGGATCTTGATGGTCATTGTTTGACGTT 471
|| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 361 GGACATTAATAGTGATCATATGAGTACTAATAAGGATCTTGATGGTCATTGTTTGACATT 420
Query 472 GTGTGAGAAATATTTGGAAGATGTTATGTTGTCGGAGAAGATGAGTTCGGCCGGTAAAGA 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGTGAGAAATATTTGGAAGATGTTATGTTGTCGGAGAAGATGAGTTCGGCCGGTAAAGA 480
Query 532 GAATCGTCACCGTCGGAAACATAGCCGGTCGGCGTCAGTGTCCACGTGGCGGCCTCACCT 591
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 481 GAATCGTCACCGTCGGAAACATAGCCGGTCGGCATCAGTGTCCACGTGGCGGCCTCACCT 540
Query 592 TGATAGCATCACTGAGGATCTTAATTAA 619
||||||||||||||||||||||||||||
Sbjct 541 TGATAGCATCACTGAGGATCTTAATTAA 568
Score = 172 bits (93), Expect = 3e-42
Identities = 108/115 (94%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 703 tttttttttttGGATCCGG-AATCGGATTTTTATTTAACATGCCCGGTGAGAAAA-TTTC 760
||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 600 TTTTTTTTTTTGGATCCGGAAATCGGATTTTTATTTAACATTCCCGGGGAGAAAATTTTC 659
Query 761 AAATATTTTATTTATTATGAAGTTAAAACCAAAACTATGTACTGTTCTCATGTGG 815
|||||||||||||||||||||||||||| |||||||||||| ||| |||||||||
Sbjct 660 AAATATTTTATTTATTATGAAGTTAAAAACAAAACTATGTAATGTACTCATGTGG 714
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30117104430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5