BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G30240.1
Length=2496
Score E
Sequences producing significant alignments: (Bits) Value
Ahg344787 jgi|Araly1|344787|fgenesh1_pg.C_scaffold_4001129 3869 0.0
Ahg359531 jgi|Araly1|359531|fgenesh1_pg.C_scaffold_346000001 3011 0.0
> Ahg344787 jgi|Araly1|344787|fgenesh1_pg.C_scaffold_4001129
Length=2493
Score = 3869 bits (2095), Expect = 0.0
Identities = 2365/2498 (95%), Gaps = 7/2498 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTTTCGATGTTTGGCAGAGAAGATACCAACTCGTCGCAGTGGGGCGAAGTGCAC 60
||||| || |||| |||||||||||| |||| |||||||||||| | |||||||||||||
Sbjct 1 ATGGATCTGTCGACGTTTGGCAGAGACGATATCAACTCGTCGCAATTGGGCGAAGTGCAC 60
Query 61 GGTCCATTCATGCTGGAAGAGATTGTGTGCCAGGCACAAAACATGCTGACCTCAAGAGGC 120
|||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||| ||||
Sbjct 61 GGTCCATTCATGTTGGAAGAGCTTGTGTGCCAGACACAAAACATGTTGACCTCAAAAGGC 120
Query 121 ATTTTCATGAAAAGTAACCCTCTCAAATACGCATTGCCTCTTCTATTGCTACAAATGTCA 180
||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 ATTTTCATGAAGAGTGACCCTCTCAAATACGCAATGCCTCTTCTATTGCTACAAATGTCA 180
Query 181 GTCATCATCGTCACCTCTAGGCTTATCTTCCGCGTCCTTCAACCTTTAAAGCAAGGAATG 240
||||||||||| || ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 GTCATCATCGTAACTTCTAGGCTTATCTTCCGTGTACTTCAACCTTTAAAGCAAGGAATG 240
Query 241 ATCTCTGCTCAAGTCTTGACTGGTGTTGTTTTAGGACCGTCTTTCTTAGGACATAATGTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATCTCTGCTCAAGTCTTGACTGGTGTTGTTTTAGGACCGTCTTTCTTAGGACACAATGTG 300
Query 301 ATTTACATGAACATGTTTCTTCCCGCGGGAGGCAAGATCATAATACAAACGCTTTCAAAC 360
| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 301 AGATACATGAACATGTTTCTTCCCGCTGGAGGCAAGATCATTATACAAACGCTTTCAAAC 360
Query 361 GTCGGTTTCGTCATCCATCTCTTCCTCCTCGGACTCAAAATCGATGGGAGTATTATCAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCGGTTTCGTCATCCATCTCTTCCTCCTCGGACTCAAAATCGATGGGAGTATTATCAGA 420
Query 421 AAAGCTGGTTCTAAAGCCATTCTTATTGGTACAGCCTCTTACGCCTTCCCGTTCTCTCTT 480
|||||||| ||||||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 421 AAAGCTGGCTCTAAAGCCATCCTCATTGGTACAGCCTCTTACGCCTTCCCGTTCTCGCTT 480
Query 481 GGGAACCTCACGATTATGTTCATTAGTAAAACTATGGGACTTCCCAGCGACGTGATTAGT 540
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGGAACCTTACGATTTTGTTCATTAGTAAAACTATGGGACTTCCCAGCGACGTGATTAGC 540
Query 541 TGTACAAGCAGCGCAATCTCCTTGAGCTCTATGACTTCATTCCCGGTTACAACCACGGTC 600
|||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 541 TGTACAAGCAGCGCGATCTCCTTGAGCTCGATGACTTCATTTCCGGTTACAACCACGGTA 600
Query 601 TTAGCGGAACTTAACATCCTTAACTCCGAGCTAGGTCGTTTAGCCACCCACTGCTCAATG 660
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 601 TTAGCTGAACTTAACATCCTTAACTCTGAGCTAGGTCGGTTAGCCACCCACTGCTCAATG 660
Query 661 GTCTGCGAAGTTTGTAGCTGGTTTGTCGCTCTCGCTTTTAATCTCTACACACGTGACCGG 720
||||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| |||
Sbjct 661 GTCTGCGAAATTTGTAGCTGGTTCGTCGCTCTCGCGTTTAATCTCTACACGCGTGAGCGG 720
Query 721 ACGATGACTAGTCTTTACGCGCTTTCCATGATCATAGGTCTCCTTCTGGTGATTTATTTC 780
||||||||||| ||||||||| ||| ||||||| ||||||| ||||||||||| ||||||
Sbjct 721 ACGATGACTAGCCTTTACGCGATTTTCATGATCGTAGGTCTTCTTCTGGTGATATATTTC 780
Query 781 GTCTTTAGACCTATAATAGTATGGCTCACCCAGAGGAAAACCAAATCCATGGATAAGAAA 840
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 781 GTCTTTAGACCTATAATAGTATGGCTCACCCAGAGGAAAAGCAAATCAATGGATAAGAAA 840
Query 841 GACGTTGTCCCGTTCTTTCCGGTACTCTTGCTTTTATCTATAGCTAGCCTTAGTGGAGAG 900
|||||||| |||||||| ||||| ||||| ||||||||| ||||||||||||| ||||||
Sbjct 841 GACGTTGTACCGTTCTTCCCGGTCCTCTTTCTTTTATCTGTAGCTAGCCTTAGCGGAGAG 900
Query 901 GCCATGGGGGTCCATGCTGCGTTTGGAGCGTTTTGGTTAGGTGTTTCGCTCCCTGATGGT 960
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 901 GCCATGGGGGTCCATGCTGCGTTTGGAGCGTTTTGGTTAGGCGTTTCTCTCCCTGATGGT 960
Query 961 CCACCTTTAGGCACGGAACTTGCTGCAAAACTCGAGATGTTTGCTTCGAATTTGTTCCTC 1020
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 961 CCGCCTTTAGGCACGGAACTTGCTGCGAAACTCGAGATGTTTGCTTCGAATTTGTTCCTC 1020
Query 1021 CCTTGTTTCATTGCCATTAGTGGGTTGCAAACTAATTTCTTTGAGATAACAGAGAGCCAT 1080
|| |||||||| ||||||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct 1021 CCCTGTTTCATCGCCATTAGTGGTTTGCAAACAAATTTCTTTGAGATCACAGAGAGCCAT 1080
Query 1081 GAGCACCATGTGGTAATGATTGAGATAATTCTCTTGATCACTTATGGATGCAAGTTCCTT 1140
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1081 GAGCACCATGTGGTAATGATTGAGATCATTCTCTTGATCACTTATGGATGCAAGTTCCTT 1140
Query 1141 GGAACAGCAGCTGCGTCTGCTTACTGCCAAACGCAGATTGGAGACGCGCTTTGTTTGGCC 1200
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1141 GGAACAGCGGCTGCGTCTGCTTACTGCCAAACGCAGATCGGAGACGCGCTTTGTTTGGCC 1200
Query 1201 TTCTTGATGTGTTGCCAAGGTATCATTGAAGTCTACACTACTATCGTGTGGAAAGACGCT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTCTTGATGTGTTGCCAAGGTATCATTGAAGTCTACACTACTATCGTGTGGAAAGACGCT 1260
Query 1261 CAGGTTGTTGATACAGAATGCTTTAATCTGGTGATCATCACGATTTTGTTCGTAACTGGT 1320
||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1261 CAGGTTGTTGACACAGAATGCTTTAATCTGGTGATCATAACGATTTTGTTGGTAACTGGG 1320
Query 1321 ATTTCCCGGTTCCTCGTGGTGTACCTCTACGACCCTTCAAAACGTTACAAAAGCAAAAGC 1380
||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1321 ATTTCGCGGTTTCTCGTCGTGTACCTCTACGACCCTTCAAAACGTTATAAAAGCAAAAGC 1380
Query 1381 AAACGAACAATCCTCAACACGAGACAACATAATCTTCAGCTACGTCTTCTCCTTGGTCTC 1440
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1381 AAACGAACAATCCTCAACACGAGACAACACAATCTTCAGCTACGTCTTCTCCTTGGCCTC 1440
Query 1441 TATAATGTTGAAAACGTTCCTTCCATGGTTAATCTTCTAGAAGCTACTTACCCGACACGG 1500
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1441 TACAATGTTGAAAACGTTCCTTCTATGGTGAATCTTCTAGAAGCTACTTACCCGACACGG 1500
Query 1501 TTTAACCCGATCTCATTCTTTACGTTGCACCTCGTCGAGCTTAAAGGCCGAGCTCATGCA 1560
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1501 TTTAACCCGATCTCATTCTTTACTTTGCATCTCGTCGAGCTTAAAGGCCGAGCTCATGCA 1560
Query 1561 CTCCTTACACCACACCATCAGATGAACAAACTTGACCCTAACACGGCCCAGTCCACACAT 1620
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1561 GTCCTTACACCGCACCATCAGATGAACAAACTTGACCCTAATACGGCCCAGTCCACTCAC 1620
Query 1621 ATTGTCAACGCCTTTCAGCGTTTTGAGCAAAAGTACCAGGGAGCTCTCATGGCGCAACAC 1680
|| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1621 ATCGTCAACGCCTTCCAGCGTTTCGAGCAAAAGTACCAGGGAGCTCTCATGGCGCAACAC 1680
Query 1681 TTTACCGCAGCCGCGCCTTACTCGAGTATAAACAACGACATATGCACGCTGGCCCTCGAC 1740
||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||||
Sbjct 1681 TTTACCGCAGCCGCGCCTTACTCGAGTATAAACAACGACGTATGTACGCTTGCGCTCGAC 1740
Query 1741 AAGAAAGCGACGTTAATCGTGATTCCGTTCCACAAGCAGTACGCGATTGACGGGACGGTC 1800
||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1741 AAGAAGGCGACGTTAATTGTGATTCCGTTCCACAAGCAGTACGCGATTGACGGAACGGTC 1800
Query 1801 GGACAAGTCAACGGGCCCATCCGGACCATAAACCTTAACGTGTTGGACGCGGCACCTTGT 1860
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1801 GGACAAGTCAACGGGCCCATCCGGAACATAAACCTTAACGTGTTGGAAGCGGCACCTTGT 1860
Query 1861 TCGGTGGCAATATTCATAGACCGAGGAGAGACCGAGGGACGTCGGTCCGTGTTGATGACC 1920
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1861 TCGGTCGCAATATTCATAGACCGAGGAGAGACCGAGGGACGTCGCTCCGTGTTGATGACC 1920
Query 1921 AATACGTGGCAGAACGTTGCGATGCTCTTCATCGGTGGCAAGGATGATGCGGAAGCGCTC 1980
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1921 AATACGTGGCATAACGTGGCGATGCTCTTCATCGGAGGCAAGGATGACGCGGAAGCGCTA 1980
Query 1981 GCGTTATGCATGAGGATGGCTGAAAAACCAGACCTTAACGTTACGATGATACATTTCCGT 2040
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1981 GCGTTATGCATGAGGATGGCTGAAAAACCGGACCTTAACGTTACGATGATACATTTCCGT 2040
Query 2041 CACAAGAGCGCTCTTCAAGACGAAGATTACAGCGACATGTCTGAGTACAATCTCATCA-G 2099
||||||||||||||||||||||| |||||||| |||||||||||||||||||| || | |
Sbjct 2041 CACAAGAGCGCTCTTCAAGACGAGGATTACAGTGACATGTCTGAGTACAATCTAAT-ATG 2099
Query 2100 TGATTTCAAGAGCTATGCAGCGAACAAAGGGAAAATTCACTACGTAGAGGAGATAGTGAG 2159
|||||||||||| |||||||||||||||||||| |||| ||||| ||||||||||||||
Sbjct 2100 CGATTTCAAGAGCCATGCAGCGAACAAAGGGAAAGTTCATTACGTGGAGGAGATAGTGAG 2159
Query 2160 AGATGGCGTGGAGACTACGCAAGTGATTAGCTCACTTGGAGATGCCTATGACATGGTGTT 2219
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 2160 AGATGGCGTGGAGACTACACAAGTGATTAGCTCACTTGGAGATTCCTATGACATGGTGTT 2219
Query 2220 AGT-GGGTCGAGACCATGACCTAGAGTCTTCGGTCTTGTACGGACTCACGGACTGGAGTG 2278
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2220 AGTAGGG-CGAGACCATGACCTAGAGTCTTCGGTCTTGTACGGACTCACGGACTGGAGTG 2278
Query 2279 AGTGCCCTGAGTTAGGTGTGATCGGAGATATGTTGACGTCGCCGGATTTTCATTTCTCCG 2338
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2279 AGTGCCCTGAGTTAGGTGTGATCGGAGATATGTTGACGTCGCCAGATTTTCATTTCTCCG 2338
Query 2339 TACTTGTCGTTCATCAGCAGCAAGGAGACGACTTACTGGCCATGGACGATAGTTATAAAT 2398
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 2339 TACTTGTCGTTCATCAGCAGCAAGGAGACT-C--ACTGGCCATGGACGATAGTTATAAAT 2395
Query 2399 TGCCTAACGTCGAGCATCAGAAGATTGGTGATACTGGAATACAACAACGTTTCTCTGCTG 2458
|||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| ||||
Sbjct 2396 TGCCTAACGTCGAGCATCAGAAGATTGGAGATACTGGAATGCAACCACGTTTCTCCGCTG 2455
Query 2459 AAGAAGGTTTCACTACCATTGATCTCGGTAAACGCTAG 2496
||||||||||||||||||||||||||||||||| ||||
Sbjct 2456 AAGAAGGTTTCACTACCATTGATCTCGGTAAACACTAG 2493
> Ahg359531 jgi|Araly1|359531|fgenesh1_pg.C_scaffold_346000001
Length=1923
Score = 3011 bits (1630), Expect = 0.0
Identities = 1830/1928 (95%), Gaps = 7/1928 (0%)
Strand=Plus/Plus
Query 571 ATGACTTCATTCCCGGTTACAACCACGGTCTTAGCGGAACTTAACATCCTTAACTCCGAG 630
||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 1 ATGACTTCATTTCCGGTTACAACCACGGTATTAGCTGAACTTAACATCCTTAACTCTGAG 60
Query 631 CTAGGTCGTTTAGCCACCCACTGCTCAATGGTCTGCGAAGTTTGTAGCTGGTTTGTCGCT 690
|||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 CTAGGTCGGTTAGCCACCCACTGCTCAATGGTCTGCGAAATTTGTAGCTGGTTCGTCGCT 120
Query 691 CTCGCTTTTAATCTCTACACACGTGACCGGACGATGACTAGTCTTTACGCGCTTTCCATG 750
||||| |||||||||||||| ||||| |||||||||||||| ||||||||| ||| ||||
Sbjct 121 CTCGCGTTTAATCTCTACACGCGTGAGCGGACGATGACTAGCCTTTACGCGATTTTCATG 180
Query 751 ATCATAGGTCTCCTTCTGGTGATTTATTTCGTCTTTAGACCTATAATAGTATGGCTCACC 810
||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCGTAGGTCTTCTTCTGGTGATATATTTCGTCTTTAGACCTATAATAGTATGGCTCACC 240
Query 811 CAGAGGAAAACCAAATCCATGGATAAGAAAGACGTTGTCCCGTTCTTTCCGGTACTCTTG 870
|||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |||||
Sbjct 241 CAGAGGAAAAGCAAATCAATGGATAAGAAAGACGTTGTACCGTTCTTCCCGGTCCTCTTT 300
Query 871 CTTTTATCTATAGCTAGCCTTAGTGGAGAGGCCATGGGGGTCCATGCTGCGTTTGGAGCG 930
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTTTATCTGTAGCTAGCCTTAGCGGAGAGGCCATGGGGGTCCATGCTGCGTTTGGAGCG 360
Query 931 TTTTGGTTAGGTGTTTCGCTCCCTGATGGTCCACCTTTAGGCACGGAACTTGCTGCAAAA 990
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||
Sbjct 361 TTTTGGTTAGGCGTTTCTCTCCCTGATGGTCCGCCTTTAGGCACGGAACTTGCTGCGAAA 420
Query 991 CTCGAGATGTTTGCTTCGAATTTGTTCCTCCCTTGTTTCATTGCCATTAGTGGGTTGCAA 1050
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 421 CTCGAGATGTTTGCTTCGAATTTGTTCCTCCCCTGTTTCATCGCCATTAGTGGGTTGCAA 480
Query 1051 ACTAATTTCTTTGAGATAACAGAGAGCCATGAGCACCATGTGGTAATGATTGAGATAATT 1110
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 ACCAATTTCTTTGAGATCACAGAGAGCCATGAGCACCATGTGGTAATGATTGAGATCATT 540
Query 1111 CTCTTGATCACTTATGGATGCAAGTTCCTTGGAACAGCAGCTGCGTCTGCTTACTGCCAA 1170
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 541 CTCTTGATCACTTATGGATGCAAGTTCCTTGGAACAGCGGCTGCGTCTGCTTACTGCCAA 600
Query 1171 ACGCAGATTGGAGACGCGCTTTGTTTGGCCTTCTTGATGTGTTGCCAAGGTATCATTGAA 1230
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACGCAGATCGGAGACGCGCTTTGTTTGGCCTTCTTGATGTGTTGCCAAGGTATCATTGAA 660
Query 1231 GTCTACACTACTATCGTGTGGAAAGACGCTCAGGTTGTTGATACAGAATGCTTTAATCTG 1290
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GTCTACACTACTATCGTGTGGAAAGACGCTCAGGTTGTTGACACAGAATGCTTTAATCTG 720
Query 1291 GTGATCATCACGATTTTGTTCGTAACTGGTATTTCCCGGTTCCTCGTGGTGTACCTCTAC 1350
|||||||||||||||||||| ||||| || ||||| ||||| ||||| ||||||||||||
Sbjct 721 GTGATCATCACGATTTTGTTGGTAACCGGGATTTCGCGGTTTCTCGTCGTGTACCTCTAC 780
Query 1351 GACCCTTCAAAACGTTACAAAAGCAAAAGCAAACGAACAATCCTCAACACGAGACAACAT 1410
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACCCTTCAAAACGTTACAAAAGCAAAAGCAAACGAACAATCCTCAACACGAGACAACAC 840
Query 1411 AATCTTCAGCTACGTCTTCTCCTTGGTCTCTATAATGTTGAAAACGTTCCTTCCATGGTT 1470
|||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 841 AATCTTCAGCTACGTCTTCTCCTTGGCCTCTACAATGTTGAAAACGTTCCTTCTATGGTG 900
Query 1471 AATCTTCTAGAAGCTACTTACCCGACACGGTTTAACCCGATCTCATTCTTTACGTTGCAC 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 901 AATCTTCTAGAAGCTACTTACCCGACACGGTTTAACCCGATCTCATTCTTTACTTTGCAT 960
Query 1531 CTCGTCGAGCTTAAAGGCCGAGCTCATGCACTCCTTACACCACACCATCAGATGAACAAA 1590
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 961 CTCGTCGAGCTTAAAGGCCGAGCTCATGCAGTCCTTACACCGCACCATCAGATGAACAAA 1020
Query 1591 CTTGACCCTAACACGGCCCAGTCCACACATATTGTCAACGCCTTTCAGCGTTTTGAGCAA 1650
||||||||||| |||||||||||||| || || ||||||||||| |||||||| ||||||
Sbjct 1021 CTTGACCCTAATACGGCCCAGTCCACTCACATCGTCAACGCCTTCCAGCGTTTCGAGCAA 1080
Query 1651 AAGTACCAGGGAGCTCTCATGGCGCAACACTTTACCGCAGCCGCGCCTTACTCGAGTATA 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGTACCAGGGAGCTCTCATGGCGCAACACTTTACCGCAGCCGCGCCTTACTCGAGTATA 1140
Query 1711 AACAACGACATATGCACGCTGGCCCTCGACAAGAAAGCGACGTTAATCGTGATTCCGTTC 1770
||||||||| |||| ||||| || ||||||||||| ||||||||||| ||||||||||||
Sbjct 1141 AACAACGACGTATGTACGCTTGCGCTCGACAAGAAGGCGACGTTAATTGTGATTCCGTTC 1200
Query 1771 CACAAGCAGTACGCGATTGACGGGACGGTCGGACAAGTCAACGGGCCCATCCGGACCATA 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1201 CACAAGCAGTACGCGATTGACGGGACGGTCGGACAAGTCAACGGGCCCATCCGGAACATA 1260
Query 1831 AACCTTAACGTGTTGGACGCGGCACCTTGTTCGGTGGCAATATTCATAGACCGAGGAGAG 1890
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1261 AACCTTAACGTGTTGGAAGCGGCACCTTGTTCGGTCGCAATATTCATAGACCGAGGAGAG 1320
Query 1891 ACCGAGGGACGTCGGTCCGTGTTGATGACCAATACGTGGCAGAACGTTGCGATGCTCTTC 1950
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1321 ACCGAGGGACGTCGCTCCGTGTTGATGACCAATACGTGGCATAACGTGGCGATGCTCTTC 1380
Query 1951 ATCGGTGGCAAGGATGATGCGGAAGCGCTCGCGTTATGCATGAGGATGGCTGAAAAACCA 2010
||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1381 ATCGGAGGCAAGGATGACGCGGAAGCGCTAGCGTTATGCATGAGGATGGCTGAAAAACCG 1440
Query 2011 GACCTTAACGTTACGATGATACATTTCCGTCACAAGAGCGCTCTTCAAGACGAAGATTAC 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1441 GACCTTAACGTTACGATGATACATTTCCGTCACAAGAGCGCTCTTCAAGACGAGGATTAC 1500
Query 2071 AGCGACATGTCTGAGTACAATCTCATCAGTGATTTCAAGAGCTATGCAGCGAACAAAGGG 2130
|| |||||||||||||||||||| ||| | |||||||||||| |||||||||||||| ||
Sbjct 1501 AGTGACATGTCTGAGTACAATCTAATCTGCGATTTCAAGAGCCATGCAGCGAACAAA-GG 1559
Query 2131 AAAA-TTCACTACGTAGAGGAGATAGTGAGAGATGGCGTGGAGACTACGCAAGTGATTAG 2189
|||| |||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1560 AAAAGTTCATTACGTGGAGGAGATAGTGAGAGATGGCGTGGAGACTACACAAGTGATTAG 1619
Query 2190 CTCACTTGGAGATGCCTATGACATGGTGTTAGT-GGGTCGAGACCATGACCTAGAGTCTT 2248
||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1620 CTCACTTGGAGATTCCTATGACATGGTGTTAGTAGGG-CGAGACCATGACCTAGAGTCTT 1678
Query 2249 CGGTCTTGTACGGACTCACGGACTGGAGTGAGTGCCCTGAGTTAGGTGTGATCGGAGATA 2308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CGGTCTTGTACGGACTCACGGACTGGAGTGAGTGCCCTGAGTTAGGTGTGATCGGAGATA 1738
Query 2309 TGTTGACGTCGCCGGATTTTCATTTCTCCGTACTTGTCGTTCATCAGCAGCAAGGAGACG 2368
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TGTTGACGTCGCCAGATTTTCATTTCTCCGTACTTGTCGTTCATCAGCAGCAAGGAGACT 1798
Query 2369 ACTTACTGGCCATGGACGATAGTTATAAATTGCCTAACGTCGAGCATCAGAAGATTGGTG 2428
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1799 -C--ACTGGCCATGGACGATAGTTATAAATTGCCTAAAGTCGAGCATCAGAAGATTGGAG 1855
Query 2429 ATACTGGAATACAACAACGTTTCTCTGCTGAAGAAGGTTTCACTACCATTGATCTCGGTA 2488
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1856 ATACTGGAATGCAACCACGTTTCTCCGCTGAAGAAGGTTTCACTACCATTGATCTCGGTA 1915
Query 2489 AACGCTAG 2496
||| ||||
Sbjct 1916 AACACTAG 1923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94082905150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5